I don't think you understood my question very well. Tophat and Bowtie are available by default in Galaxy. Tophat and Bowtie however is not installed in my operating system. Will it still work in Galaxy?
On Mon, Oct 8, 2012 at 3:22 PM, Björn Grüning < bjoern.gruening@pharmazie.uni-freiburg.de> wrote:
Hi Sachit,
you need to install such tools by yourself, unless you are using some new tools from the toolshed. For example the ncbi-tools or BWA from the toolshed are capable of installing all dependency automatically. In the future the plan is to move all heavy tools to the toolshed with automatic dependency and version handling, afaik.
Regards, Bjoern
Hello. The tools like Tophat, Bowtie etc are pre-installed in Galaxy. Are those tools must be installed in order to work in Galaxy. For example: I am using Debian machine(Don't have tophat and bowtie installed). Will tophat and bowtie work in my local galaxy? Thanks ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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