Kristis, This data is available further downstream in an RNA-seq analysis pipeline, specifically, as output from the Cuffdiff tool. Take a look at the page for more details: https://main.g2.bx.psu.edu/rna-seq Best, J. On Nov 9, 2012, at 3:42 AM, Vevis, Christis wrote:

Hi,

I am performing online tophat on 5 different samples which I want to compare for gene expression. Is there any simple way, after the end of tophat for all of them, with which I can have an excel table with the 5 samples and their hits?

Something similar to this Vevis1 Vevis2 Vevis3 Vevis4 Vevis5 uc010kuo.1 128.8503 136.60553 146.7073 91.23218 120.325 AK311687 TRA2A Homo sapiens transformer 2 alpha homolog (Drosophila) (TRA2A), mRNA. Regards

Kristis Vevis, PhD Student Cell Biology UCL Institute of Ophthalmology 11-43 Bath Street London EC1V 9EL, UK 020 7608 4067

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