Hi Galaxy Team,
do you have any prevision of incorporating this new Illumina short reads mapper called Stampy ( Genome Res. <javascript:AL_get(this, 'jour', 'Genome Res.');> 2010 Oct 27 Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads.) in Galaxy?
Has any galaxy user tried this new program?
Thanks,
Murilo
Hello Murilo,
After checking in with the development team, I confirmed that there are no plans yet to incorporate this new tool. However the team agrees that it does look like a good fit with the current NGS analysis tool set. We encourage you (or anyone else interested) who has created a wrapper to please submit it to the Galaxy community Tool Shed: http://community.g2.bx.psu.edu/
Thanks!
Jen Galaxy team
On 11/4/10 5:44 PM, Murilo Sena wrote:
Hi Galaxy Team, do you have any prevision of incorporating this new Illumina short reads mapper called Stampy ( Genome Res. <javascript:AL_get(this, 'jour', 'Genome Res.');> 2010 Oct 27 Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads.) in Galaxy? Has any galaxy user tried this new program? Thanks, Murilo
-- Murilo Sena PhD Student Laboratory of Gene Expression in Eukaryotes Departamento de Bioquímica Instituto de Química Universidade de São Paulo Av. Prof. Lineu Prestes 748 sala 1200 05508-000 São Paulo, SP Brasil
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