Hi Keith, A SAMTools update is being discussed internally. I can't comment yet about when exactly this would be implemented, but when the time comes the details would be made public in the Galaxy Announcements and News Brief: http://galaxyproject.org/wiki/News There are also a few bitbucket tickets related to particular SAMTools modules, with this one being specific for mpileup: http://bitbucket.org/galaxy/galaxy-central/issue/524 Best, Jen Galaxy team On 9/7/11 7:09 AM, Keith Funkhouser wrote:

Hi all,

It seems that the more recent "mpileup" tool that is a part of SAMtools offer better indel prediction than the current "pileup" tool.

I've found the following thread http://gmod.827538.n3.nabble.com/samtools-mpileup-update-td3277940.html ...and the following issue https://bitbucket.org/galaxy/galaxy-central/issue/524/implement-wrappers-for... ...regarding the topic.

Is there community demand for this new tool implementation in Galaxy, or is it already in the works?

Thanks, Keith Funkhouser

___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:

http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/

-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support