Hello, I am having problem with starting my query. For days it is showing "Job waiting to run". Is the system backed up and there is a long queue? or is there a problem with my query? Normally if there is any problem it shows an error message. I am within the usage limits. I am trying to map my SOLiD data set to custom reference genome (fasta format). I converted the SOLiD output to fastq. Then I am using Map with Bowtie for SOLiD. Everything went fine quickly except the last step, which waiting for over 6 days now. Any help or suggestions appreciated. Thank you, Neel Neel Aluru Assistant Scientist Biology Department Redfield Building 3-04 Woods Hole Oceanographic Institution 45, Water Street Woods Hole, MA naluru@whoi.edu 508-289-3607 http://www.whoi.edu/page.do?pid=109916
Hi Neel, The public Main Galaxy instance is very busy, but I can let you know that I see your account in the queue in line for processing. The best option is to leave the job alone to process, and to not delete/re-run it. If you want to send me a link to your shared history, I would be glad to double check the situation. You can email direct to me. Thank you for your patience, Jen Galaxy team On 5/12/13 6:57 AM, Neel Aluru wrote:
Hello,
I am having problem with starting my query. For days it is showing "Job waiting to run". Is the system backed up and there is a long queue? or is there a problem with my query? Normally if there is any problem it shows an error message. I am within the usage limits. I am trying to map my SOLiD data set to custom reference genome (fasta format). I converted the SOLiD output to fastq. Then I am using Map with Bowtie for SOLiD. Everything went fine quickly except the last step, which waiting for over 6 days now. Any help or suggestions appreciated.
Thank you, Neel
Neel Aluru Assistant Scientist Biology Department Redfield Building 3-04 Woods Hole Oceanographic Institution 45, Water Street Woods Hole, MA
naluru@whoi.edu <mailto:naluru@whoi.edu> 508-289-3607 http://www.whoi.edu/page.do?pid=109916
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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To manage your subscriptions to this and other Galaxy lists, please use the interface at:
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-- Jennifer Hillman-Jackson Galaxy Support and Training http://galaxyproject.org
Hi Jen, Thank you for the reply. Yes, I noticed today that my queries are running. I apologize for deleting and re-running them. I thought something is wrong with my files and they are not working properly. I will be more patient from now on. Thanks, Neel On 5/13/13 4:59 PM, Jennifer Jackson wrote:
Hi Neel,
The public Main Galaxy instance is very busy, but I can let you know that I see your account in the queue in line for processing. The best option is to leave the job alone to process, and to not delete/re-run it.
If you want to send me a link to your shared history, I would be glad to double check the situation. You can email direct to me.
Thank you for your patience,
Jen Galaxy team
On 5/12/13 6:57 AM, Neel Aluru wrote:
Hello,
I am having problem with starting my query. For days it is showing "Job waiting to run". Is the system backed up and there is a long queue? or is there a problem with my query? Normally if there is any problem it shows an error message. I am within the usage limits. I am trying to map my SOLiD data set to custom reference genome (fasta format). I converted the SOLiD output to fastq. Then I am using Map with Bowtie for SOLiD. Everything went fine quickly except the last step, which waiting for over 6 days now. Any help or suggestions appreciated.
Thank you, Neel
Neel Aluru Assistant Scientist Biology Department Redfield Building 3-04 Woods Hole Oceanographic Institution 45, Water Street Woods Hole, MA
naluru@whoi.edu <mailto:naluru@whoi.edu> 508-289-3607 http://www.whoi.edu/page.do?pid=109916
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at:
-- Jennifer Hillman-Jackson Galaxy Support and Training http://galaxyproject.org
-- Neel Aluru, Ph.D. Assistant Scientist Biology Department Woods Hole Oceanographic Institution Woods Hole 02543 MA USA Phone:508-289-3607 Fax:508-457-2134 http://www.whoi.edu/profile/naluru/
participants (2)
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Jennifer Jackson -
Neel Aluru