Hi, Are there any tools like HMMER (2.3.2 or 3.0) available on Galaxy to run a HMM on a DNA or protein sequence? I was not able to find any. Thanks -Surya
Hi,
Are there any tools like HMMER (2.3.2 or 3.0) available on Galaxy to run a HMM on a DNA or protein sequence? I was not able to find any. Thanks
-Surya
Surya, HMMer is not available on our public server, nor is there anything similar. However, there is a wrapper for hmmscan in the Galaxy Tool Shed: http://community.g2.bx.psu.edu/ that you can use if download and install on a local Galaxy instance. I expect we'll add HMM support in the future, but it's not a priority right now. Best, J.
Thank you for the prompt reply. Will look forward to it. Best, Surya On Tue, Mar 29, 2011 at 10:56 AM, Jeremy Goecks <jeremy.goecks@emory.edu>wrote:
Hi,
Are there any tools like HMMER (2.3.2 or 3.0) available on Galaxy to run a HMM on a DNA or protein sequence? I was not able to find any. Thanks
-Surya
Surya,
HMMer is not available on our public server, nor is there anything similar. However, there is a wrapper for hmmscan in the Galaxy Tool Shed: http://community.g2.bx.psu.edu/ that you can use if download and install on a local Galaxy instance.
I expect we'll add HMM support in the future, but it's not a priority right now.
Best, J.
participants (2)
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Jeremy Goecks -
Surya Saha