Hi Bernardo,

Hello Galaxy community,

I would like to know if there is any available tool in Galaxy for automated gene annotation. I need gene annotation in GTF or GFF3 format to run CuffDiff on a RNA-Seq project that we are.

We have a tool, that annotates your prokaryotic genome, through similarity searches and creates a genbank file afterwards ... Is that what you are searching for?

If not, do you recommend me any software or utility. We have the genome annotated in GenBank format, but searching in the web I've seen that is not possible to convert GenBank format to GTF or GFF3.

I think its possible. I have a 'GenBank / embl converter to GFF' and vice versa converter here. I will try to pack it and send it tomorrow when im back at work. Cheers, Bjoern

I appreciate your opinions. Thank you, Bernardo

--

Bernardo Bello Ortí

Becario predoctoral FPI

CReSA-IRTA

Campus de Bellaterra-Universitat Autònoma de Barcelona

Edifici CReSA

08193 Bellaterra (Barcelona)

Tel.: 647 42 52 63 www.cresa.es

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