Giuseppe, Try this: (1) Convert from BAM to SAM; (2) Convert from SAM to inverval; (3) Cut columns as needed to create a BED file. Good luck, J. On Dec 27, 2011, at 11:37 AM, Giuseppe Petrosino wrote:

Dear all,

I downloaded a file in .BAM format and want to transform it into .BED format. What can I do on Galaxy? Thanks a lot!

Giuseppe

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