Scott: We are working on a document that will provide description of tool- related tags. It will be available on our wiki page within two weeks. In the meantime, you can take a look at existing configuration files. Perhaps the most complex are the ones involving conditionals and repeat elements. Take a look at: tools/plotting/xy_plot.xml tools/stats/grouping.xml Let us know if you have additional questions and I will let you know once the description is available. anton galaxy team On May 23, 2008, at 12:29 PM, Scott Kuehn wrote:

Hello,

I'm looking for an appropriate DTD to use as a basis for designing new tools (section 3, here: http://g2.trac.bx.psu.edu/wiki/ AddToolTutorial). Can someone point me toward this? I looked on the website and the latest source distribution, and could not find anything.

Thanks,

Scott

Scott Kuehn University of Washington Medical Genetics 2211 Elliot: 206-267-1091 x215

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Anton Nekrutenko Asst. Professor Department of Biochemistry and Molecular Biology Center for Comparative Genomics and Bioinformatics Penn State University anton@bx.psu.edu http://nekrut.bx.psu.edu 814.865.4752