microGalaxy

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microgalaxy@lists.galaxyproject.org

January 2023

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Next meeting - February 9th
by Bérénice Batut 09 Feb '23

09 Feb '23

Dear all, I hope you are doing well! Here are some news about the microGalaxy community. *Next meeting**- February 9th * The next microGalaxy meeting will take place on *February 9th8:00-10:00am UTC *(check your timezone) <https://arewemeetingyet.com/UTC/2023-02-09/08:00/microGalaxy> * Meeting rolling minutes <https://docs.google.com/document/d/13VjcUjStuIp7bK29e74k8Nqb7N4lmVcg1ioArEW…> * Zoom <https://us02web.zoom.us/j/82453101719?pwd=NlJudHk1c0xqSC83eXM4bTM1YWJ2UT09> (Meeting ID: 824 5310 1719; Passcode: micro) Daniela Brites from the Swiss Tropical and Public Health Institute will give a talk. *Other news* /List of tools in Galaxy:/ <https://docs.google.com/spreadsheets/d/1Nq_g-CPc8t_eC4M1NAS9XFJDflA7yE3b9hf…>//A curated list of tools available in Galaxy and their metadata automatically extracted from different GitHub repositories using a dedicated script <https://github.com/bebatut/galaxy_tool_extractor>. In addition, we have a wishlist that is manually created. /Page on the Hub about Microbial data analysis in Galaxy: /We started a draft <https://docs.google.com/document/d/1SsUi5ZOxWbkCpnw1IYmDR0WpRK0csVMHzYhuME5…> for a page on Hub to present the effort of the community regarding Microbial data analysis in Galaxy. The idea is to collect available tools, workflows, and training but also use cases/applications, projects, publications, etc. We would your help there. So *please review/expand it.* * * I hope to see you during the next meeting. Best, Bérénice -- Bérénice Batut (she/her) Researcher University of Freiburg de.NBI / ELIXIR-DE https://research.bebatut.fr

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Workshop for pathogen detection from sequencing data using Galaxy - February 2nd, 2023
by Bérénice Batut 04 Jan '23

04 Jan '23

Hi all, First of all, happy new year! We organize a practical workshop for (foodborne) pathogen detection from (direct Nanopore) sequencing data using Galaxy * Date: February 2nd, 2023 * Location: FHNW, Switzerland & online * Free * Info & Registration : https://galaxyproject.org/events/2023-02-02-foodborne-pathogen-detection-wo… Feel free to share the information with anyone that would be interested. Best, -- Bérénice Batut (she/her) Researcher University of Freiburg de.NBI / ELIXIR-DE https://research.bebatut.fr

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