microGalaxy May 2024

microgalaxy@lists.galaxyproject.org

2 participants
3 discussions

microGalaxy paper writing - Who is interested in contributing actively?
by Bérénice Batut 16 Sep '24

16 Sep '24

Hi all, In the paper WG meeting yesterday, we discussed about the 2 papers we would like to write in the next months You can find below a quick description about the aims and timelines for both and more details in the paper WG notes <https://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juA…>. If you are interested in contributing actively in any or both papers, let us know either by answering this email or adding your name in the paper WG notes <https://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juA…> on page 2 and 3 We will after that organise separate meetings for each paper. Best, Bérénice User-oriented paper What? (Opinion) paper showing that Galaxy is used for microbial data analysis and how with overview of publications using Galaxy, result of survey, use cases Where? Open-access user oriented journal (e.g. BMC Microbiology) When? November - December 2023 Process the survey and use cases Clarify the paper outline Beginning of 2024: write the manuscript Technical paper What? A technical paper presenting resources/infrastructure (tools, workflows, training, etc) available for microbial data analysis in Galaxy Where? NAR webserver <https://academic.oup.com/nar/pages/submission_webserver> When? Deadlines for NAR webserver Submission of one-page summary by December, 20th Submission of full manuscript 3 weeks after the date of the approval email or 31 January Timeline November - December: Collect tools, workflows, database and training available in Galaxy Write a 1st draft of the paper Write the summary Make a nice looking subdomain microgalaxy.usegalaxy.eu with links to workflows and training and selection of tools January Finalize the draft Submit the manuscript

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Meeting in 25 Minutes
by Paul Zierep 30 May '24

30 May '24

Dear all, this is a quick reminder about our microGalaxy Meeting in 30 minutes: [Meeting rolling minutes]( https://docs.google.com/document/d/13VjcUjStuIp7bK29e74k8Nqb7N4lmVcg1ioArEW… ) [Zoom]( https://us02web.zoom.us/j/82453101719?pwd=NlJudHk1c0xqSC83eXM4bTM1YWJ2UT09) (Meeting ID: 824 5310 1719; Passcode: micro) Best, Paul -- Dr. Paul Zierep Chair for Bioinformatics Department of Computer Science University of Freiburg Georges-Koehler-Allee 079, Room 1005a, D-79110 Freiburg, Germany E-mail: zierep(a)informatik.uni-freiburg.de <erxleben(a)informatik.uni-freiburg.de> Tel. 0049 761 203 54129 European Galaxy Team https://galaxyproject.eu https://usegalaxy.eu

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Community meeting - May 30th, 2pm UTC
by Bérénice Batut 15 May '24

15 May '24

Dear all, I hope you are all doing fine! Here is some news about the microGalaxy community. Next Community meeting We are supposed to have a community meeting tomorrow at 3pm UTC. Paul and I are under the water lately with some proposals and other work until the end of the week and we forgot to advertize it. We will move the Community meeting to Thursday, May 30 at 2 pm UTC / 4 pm CEST / 10am EDT (your timezone <https://arewemeetingyet.com/UTC/2024-05-30/14:00/microGalaxy>). Meeting rolling minutes <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…> Zoom <https://us02web.zoom.us/j/82453101719?pwd=NlJudHk1c0xqSC83eXM4bTM1YWJ2UT09> (Meeting ID: 824 5310 1719; Passcode: micro) During this meeting, we will mostly catch up with news from the community, share the outcomes of the hackathon we did in March, plan for GCC, and talk about the next months. I hope to see you around. Feel free to share the details about these meetings and this community with anyone that may be interested :) Best, Bérénice & Paul

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microGalaxy May 2024