- microGalaxy - lists.galaxyproject.org

Workshop for pathogen detection from sequencing data using Galaxy - February 2nd, 2023
by Bérénice Batut 04 Jan '23

04 Jan '23

Hi all, First of all, happy new year! We organize a practical workshop for (foodborne) pathogen detection from (direct Nanopore) sequencing data using Galaxy * Date: February 2nd, 2023 * Location: FHNW, Switzerland & online * Free * Info & Registration : https://galaxyproject.org/events/2023-02-02-foodborne-pathogen-detection-wo… Feel free to share the information with anyone that would be interested. Best, -- Bérénice Batut (she/her) Researcher University of Freiburg de.NBI / ELIXIR-DE https://research.bebatut.fr

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Draft for a page on Hub, tool list, next meeting and more news
by Bérénice Batut 17 Oct '22

17 Oct '22

Dear all, I hope you are doing well! Here are some news about the microGalaxy community. *Previous meeting - October 5th during European Galaxy Days* During our last meeting 2 weeks ago (see notes <https://docs.google.com/document/d/13VjcUjStuIp7bK29e74k8Nqb7N4lmVcg1ioArEW…>), we discussed: * We would like to create a page on the Galaxy Hub collecting tools, workflows, projects, etc and present the microGalaxy community o We created a draft for such page on Google doc <https://docs.google.com/document/d/1SsUi5ZOxWbkCpnw1IYmDR0WpRK0csVMHzYhuME5…> o We would like *your feedback on the structure* o *Could you also add some details about your projects and nice papers using Galaxy for microbial data analysis? * * The Hub page could be a starting point for a possible paper to show / advertise microb* analyses are possible in Galaxy, and also define a vision for the next years o *If you are interested in leading this effort, please let us know* * * *Next meeting - February **9, 2023, 9-11am CEST* The next microGalaxy meeting will take place on *February 9, 2023, 9-11am CEST***(check your timing) <https://arewemeetingyet.com/Berlin/2023-02-09/09:00/microGalaxy> * Meeting rolling minutes <https://docs.google.com/document/d/13VjcUjStuIp7bK29e74k8Nqb7N4lmVcg1ioArEW…> * Zoom <https://us02web.zoom.us/j/82453101719?pwd=NlJudHk1c0xqSC83eXM4bTM1YWJ2UT09> (Meeting ID: 824 5310 1719; Passcode: micro) If you are *interested in giving a talk*, please either contact me or add your name in the table on the first page of the minutes. Best, Bérénice -- Bérénice Batut (she/her) Researcher University of Freiburg de.NBI / ELIXIR-DE https://research.bebatut.fr

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Next meeting - BoF at EGD - October 5th + Subscribe to the mailing list (last call)
by Bérénice Batut 30 Sep '22

30 Sep '22

Dear all, I hope you are doing well! Here are some news about the microGalaxy community. *Next meeting**- October 5th during European Galaxy Days * The next microGalaxy meeting will take place on *October 5th(likely 4 or 5 pm CEST, to confirm*) as an hybrid BoF during European Galaxy Days <https://galaxyproject.org/events/2022-10-egd/> * Meeting rolling minutes <https://docs.google.com/document/d/13VjcUjStuIp7bK29e74k8Nqb7N4lmVcg1ioArEW…> * Zoom <https://us02web.zoom.us/j/82453101719?pwd=NlJudHk1c0xqSC83eXM4bTM1YWJ2UT09> (Meeting ID: 824 5310 1719; Passcode: micro) Aaron will give a talk about IRIDA and we would like to talk about next steps for the community (page on the Hub, paper?, hackathon). *Mailing list* We have now a mailing list for microGalaxy (microgalaxy(a)lists.galaxyproject.org) I will in the future only use the mailing list. So if you want to be kept informed, please subscribe here: https://lists.galaxyproject.org/lists/microgalaxy.lists.galaxyproject.org/ <https://lists.galaxyproject.org/lists/microgalaxy.lists.galaxyproject.org/>: Best, Bérénice -- Bérénice Batut (she/her) Researcher University of Freiburg de.NBI / ELIXIR-DE https://research.bebatut.fr

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Next meeting - BoF at GCC - July 17th, 5:15pm CDT
by Bérénice Batut 13 Jul '22

13 Jul '22

Dear all, I hope you are doing well! Here are some news about the microGalaxy community. *Next meeting**- July 17th during GCC * The next microGalaxy meeting will take place in few days (*July 17th <https://arewemeetingyet.com/Chicago/2022-07-17/17:15/microGalaxy>, 5:15pm CDT*) during GCC as a BoF <https://gcc2022.sched.com/event/c7bbada233915ab512408f73d7749679> * Meeting rolling minutes <https://docs.google.com/document/d/13VjcUjStuIp7bK29e74k8Nqb7N4lmVcg1ioArEW…> * Zoom <https://us02web.zoom.us/j/82453101719?pwd=NlJudHk1c0xqSC83eXM4bTM1YWJ2UT09> (Meeting ID: 824 5310 1719; Passcode: micro) I hope I will see some of you there. I do not expect anyone from EMEA (middle of the night). *Next meetings** * As we discussed last time, we would like to change the timing for the next meetings by alternating every time between timing fitting for EMEA & AMER and timing fitting for EMEA & APAC. My suggestion would be * 2-4pm European time (EMEA, AMER) * 9-11am European time (EMEA, APAC) How does the time look like for you? Would you have other proposition? Normally the next meeting should be September 9th. But we shifted our June meeting by a month to align with GCC. What do you think about shifting our next meetings by a month too? *Mailing list* We have now a mailing list for microGalaxy (microgalaxy(a)lists.galaxyproject.org) You can subscribe here: https://lists.galaxyproject.org/lists/microgalaxy.lists.galaxyproject.org/ <https://lists.galaxyproject.org/lists/microgalaxy.lists.galaxyproject.org/> Best, Bérénice

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Mailing list + Next meeting - March 10th, 2-4pm CET
by Bérénice Batut 09 Mar '22

09 Mar '22

Dear all, I hope you are doing well! Here are some news about the microGalaxy community. *Mailing list* We have now a mailing list for microGalaxy (microgalaxy(a)lists.galaxyproject.org) You can subscribe here: https://lists.galaxyproject.org/lists/microgalaxy.lists.galaxyproject.org/ <https://lists.galaxyproject.org/lists/microgalaxy.lists.galaxyproject.org/> *Next meeting** * The next microGalaxy meeting will take place on *March**10th, 2-4pm CET* <https://arewemeetingyet.com/Berlin/2022-03-10/14:00/microGalaxy>: * Meeting rolling minutes <https://docs.google.com/document/d/13VjcUjStuIp7bK29e74k8Nqb7N4lmVcg1ioArEW…> * Zoom <https://us02web.zoom.us/j/82453101719?pwd=NlJudHk1c0xqSC83eXM4bTM1YWJ2UT09> (Meeting ID: 824 5310 1719; Passcode: micro) Currently at the agenda, we have 2 confirmed talks by Pratik and Engy and maybe a 3rd one, and also time for discussion :) The next meetings will happen every 3 months, on 2nd Thursday, 2-4pm European time (possible to modify) (Google calendar with all planned meetings <https://calendar.google.com/calendar/u/1?cid=bnB1N3B1azc1bjZwMHU0YWFwdjV0Mj…>). If you would like to give a talk about your project(s), tools, workflows, data, training, or anything else in a next meeting, please add yourself to the table on the 1st page of of the meeting rolling minutes <https://docs.google.com/document/d/13VjcUjStuIp7bK29e74k8Nqb7N4lmVcg1ioArEW…>. Feel free to share the details about these meetings and this community with anyone that may be interested :) Best, Bérénice -- Bérénice Batut (she/her) Researcher University of Freiburg de.NBI / ELIXIR-DE https://research.bebatut.fr

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[µGalaxy] microGalaxy mailing list
by Valerie Schiml 09 Dec '21

09 Dec '21

Hi, Please have me in your mailing list: valerie.schiml(a)nmbu.no<mailto:valerie.schiml@nmbu.no> Best Valerie

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