Small-scale-admins

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September 2024

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2 discussions

Follow-up 19 Sept SSA meeting
by VLAD VISAN 25 Sep '24

25 Sep '24

Hi all, Thank you (to Lucille I think) for the [ https://docs.google.com/document/d/1KTz4qxZBG4Z3sF23dVKPWXYz1mCNo2YDygSUHqt… | detailed note-taking ] for the last meeting. I was able to catch up & had a few short comments/questions Conda : * Thanks for the information, I informed my team * I've not used conda in Galaxy, so my suggestions might be off, but * maybe make sure that a user cannot somehow override the conda-forge channel (through tool XML or other). * Maybe even consider IP/URL blocking any official conda links? NFS Object Store * I use NFS mounting on my Galaxy instance too (for an Object Source, and for Data Libraries) * Once the NFS folder/partition is mounted, it can be used as a regular folder? (transparent for Galaxy) * So I'm wondering why the need for the plugin in Galaxy? * Does your use-case mandate an Object Store and not a File Source? * I see a [ https://github.com/galaxyproject/galaxy/blob/9524be3b7ac0a0656aedd7596fb87a… | sshfs File Source ] already exists and that [ https://blog.ja-ke.tech/2019/08/27/nas-performance-sshfs-nfs-smb.html | sshfs is becoming competitive with NFS ] Interactive Tools * Very cool, thanks! * We have some Jupyter Notebook users locally (not (yet) in Galaxy), this could be useful to them. Scratch Object Stores, & per-user Object Stores : * If I'm not mistaken, these are both features mentioned in the recent GCC? * Do you know when the videos/slides will be available for this GCC? ( I just checked [ https://www.youtube.com/@GalaxyProject/videos | https://www.youtube.com/@GalaxyProject/videos ] ) Thank you, Vlad

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Reminder: Small scale admin meeting Thursday 19th
by Delisle Lucille 17 Sep '24

17 Sep '24

Dear all, This is a kind reminder that our small scale admin meeting is Thursday 19th. September 19, 2024, 3 PM CEST (https://www.timeanddate.com/worldclock/fixedtime.html?msg=Small+Scale+Galax…) Here is the zoom link: https://epfl.zoom.us/j/69775900853?pwd=R1gzbllUZzg0RFUrM0Mzd2MvczE3Zz09 Here is our working document, do not hesitate to put your topic suggestions: https://docs.google.com/document/d/1KTz4qxZBG4Z3sF23dVKPWXYz1mCNo2YDygSUHqt… -- Lucille Delisle, PhD PostDoc Duboule Lab Laboratory of Developmental Genomics EPFL SV ISREC UPDUB SV 2843 CH-1015 Lausanne Tel : +41 21 693 97 08

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