Small-scale-admins

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small-scale-admins@lists.galaxyproject.org

January 2025

2 participants
2 discussions

Dynamic user ssh job submission
by VLAD VISAN 28 Jan '25

28 Jan '25

Hi all, Giuseppe, Lucille & Matthias were talking about submitting jobs to a cluster as the user launching the workflow, over ssh. Here is the summary of how we did it, by adding a "dynamic user" option to the existing cli.py runner (that can work over ssh) * Code modification: [ https://github.com/vladvisan/galaxy/commit/6276fd58d27d5b02035be0e16ae8641d… | https://github.com/vladvisan/galaxy/commit/6276fd58d27d5b02035be0e16ae8641d… ] * If you have any comments, I'm thinking of improving it and then submitting a PR ? * Our related related config: * use TPV * in tpv_rules_local.yml: * destinations: ssh_ord_mini: runner: cli params: shell_plugin: SecureShell shell_username: user-a#arbitrary, not actually used in dynamic mode job_partition: main * (comment which has no impact on the dynamic user aspect: we have no job_plugin k/v in "destinations" because we get let the user choose it step by step, using TPV) Hope it helps & appreciate any feedback as well, Regards, Vlad

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Thursday, January 16th - next meeting of the "small scale servers" group
by Hans-Rudolf Hotz 10 Jan '25

10 Jan '25

Dear All Happy New Year ! Our first meeting this year will be on Thursday (Jan 16th) at 3PM CET (2PM UTC) We already have several (left over from last year) discussion points. Nevertheless, feel free to add new ones to our rolling minutes document: https://docs.google.com/document/d/1KTz4qxZBG4Z3sF23dVKPWXYz1mCNo2YDygSUHqt… zoom link: https://epfl.zoom.us/j/69775900853?pwd=R1gzbllUZzg0RFUrM0Mzd2MvczE3Zz09 Regards, Lucille and Hans-Rudolf PS: next meetings for your calendar: February 20th, 3PM CET (2PM UTC) March 20th, 3PM CET (2PM UTC)

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