I have a local galaxy installation running on OSX and have been testing it with genomes: hg18 and sacCer2. I've added these to builds.txt, and added paths to the appropriate files in alignsec.loc and faseq.loc. When I go to the upload tab in galaxy and select one of these genomes from the pull-down menu, I get the following error after execution:
Error Traceback: View as: Interactive http://localhost:8081/tool_runner/index# | Texthttp://localhost:8081/tool_runner/index# | XML http://localhost:8081/tool_runner/index# (full)http://localhost:8081/tool_runner/index# ⇝ ValueError: too many values to unpack URL: http://localhost:8081/tool_runner/index Module weberror.evalexception.middleware:*364* in respond http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#app_iter *=* self*.*
application*(*environ*,* detect_start_response*)* Module paste.debug.prints:*98* in __call__ http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#environ*,* self*.*app*)*
Module paste.wsgilib:*539* in intercept_output http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#app_iter *=* application*(*
environ*,* replacement_start_response*)* Module paste.recursive:*80* in __call__ http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#*return* self*.*application*(
*environ*,* start_response*)* Module paste.httpexceptions:*632* in __call__ http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#*return* self*.*application*(
*environ*,* start_response*)* Module galaxy.web.framework.base:*126* in __call__ http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#body *=* method*(* trans*,* *
***kwargs *)* Module galaxy.web.controllers.tool_runner:*68* in index http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#template*,* vars *=* tool*.*
handle_input*(* trans*,* params*.*__dict__ *)* Module galaxy.tools:*835* in handle_input http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#_*,* out_data *=* self*.*
execute*(* trans*,* incoming*=*params *)* *ValueError: too many values to unpack*
URL: http://localhost:8081/tool_runner/index File '/Library/WebServer/galaxy/galaxy-central/eggs/WebError-0.8a-py2.5.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '/Library/WebServer/galaxy/galaxy-central/eggs/Paste-1.6-py2.5.egg/paste/debug/prints.py', line 98 in __call__ environ, self.app) File '/Library/WebServer/galaxy/galaxy-central/eggs/Paste-1.6-py2.5.egg/paste/wsgilib.py', line 539 in intercept_output app_iter = application(environ, replacement_start_response) File '/Library/WebServer/galaxy/galaxy-central/eggs/Paste-1.6-py2.5.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/Library/WebServer/galaxy/galaxy-central/eggs/Paste-1.6-py2.5.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/Library/WebServer/galaxy/galaxy-central/lib/galaxy/web/framework/base.py', line 126 in __call__ body = method( trans, **kwargs ) File '/Library/WebServer/galaxy/galaxy-central/lib/galaxy/web/controllers/tool_runner.py', line 68 in index template, vars = tool.handle_input( trans, params.__dict__ ) File '/Library/WebServer/galaxy/galaxy-central/lib/galaxy/tools/__init__.py', line 835 in handle_input _, out_data = self.execute( trans, incoming=params ) ValueError: too many values to unpack
Any idea as to why this is happening?
Rgds,
Roy W.