I have a local galaxy installation running on OSX and have been testing it with genomes: hg18 and sacCer2. I've added these to builds.txt, and added paths to the appropriate files in alignsec.loc and faseq.loc. When I go to the upload tab in galaxy and select one of these genomes from the pull-down menu, I get the following error after execution:
Error Traceback: View as: Interactive http://localhost:8081/tool_runner/index# | Texthttp://localhost:8081/tool_runner/index# | XML http://localhost:8081/tool_runner/index# (full)http://localhost:8081/tool_runner/index# ⇝ ValueError: too many values to unpack URL: http://localhost:8081/tool_runner/index Module weberror.evalexception.middleware:*364* in respond http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#app_iter *=* self*.*
application*(*environ*,* detect_start_response*)* Module paste.debug.prints:*98* in __call__ http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#environ*,* self*.*app*)*
Module paste.wsgilib:*539* in intercept_output http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#app_iter *=* application*(*
environ*,* replacement_start_response*)* Module paste.recursive:*80* in __call__ http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#*return* self*.*application*(
*environ*,* start_response*)* Module paste.httpexceptions:*632* in __call__ http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#*return* self*.*application*(
*environ*,* start_response*)* Module galaxy.web.framework.base:*126* in __call__ http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#body *=* method*(* trans*,* *
***kwargs *)* Module galaxy.web.controllers.tool_runner:*68* in index http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#template*,* vars *=* tool*.*
handle_input*(* trans*,* params*.*__dict__ *)* Module galaxy.tools:*835* in handle_input http://localhost:8081/tool_runner/index# view http://localhost:8081/tool_runner/index#
http://localhost:8081/tool_runner/index#_*,* out_data *=* self*.*
execute*(* trans*,* incoming*=*params *)* *ValueError: too many values to unpack*
URL: http://localhost:8081/tool_runner/index File '/Library/WebServer/galaxy/galaxy-central/eggs/WebError-0.8a-py2.5.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '/Library/WebServer/galaxy/galaxy-central/eggs/Paste-1.6-py2.5.egg/paste/debug/prints.py', line 98 in __call__ environ, self.app) File '/Library/WebServer/galaxy/galaxy-central/eggs/Paste-1.6-py2.5.egg/paste/wsgilib.py', line 539 in intercept_output app_iter = application(environ, replacement_start_response) File '/Library/WebServer/galaxy/galaxy-central/eggs/Paste-1.6-py2.5.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/Library/WebServer/galaxy/galaxy-central/eggs/Paste-1.6-py2.5.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/Library/WebServer/galaxy/galaxy-central/lib/galaxy/web/framework/base.py', line 126 in __call__ body = method( trans, **kwargs ) File '/Library/WebServer/galaxy/galaxy-central/lib/galaxy/web/controllers/tool_runner.py', line 68 in index template, vars = tool.handle_input( trans, params.__dict__ ) File '/Library/WebServer/galaxy/galaxy-central/lib/galaxy/tools/__init__.py', line 835 in handle_input _, out_data = self.execute( trans, incoming=params ) ValueError: too many values to unpack
Any idea as to why this is happening?
Rgds,
Roy W.
Hi Roy,
I have a local galaxy installation running on OSX and have been testing it with genomes: hg18 and sacCer2. I've added these to builds.txt, and added paths to the appropriate files in alignsec.loc and faseq.loc. When I go to the upload tab in galaxy and select one of these genomes from the pull-down menu, I get the following error after execution:
It doesn't look like there's anything wrong with your genomes. What seems to be happening is that after selecting a build, you accidentally submit the form before choosing a file to upload. (Yes, this is a terrible error message -- we're planning to fix it soon.) Also, note that if you press the enter key in the build field, it will submit the form.
Try choosing the file to upload first, then the build, and finally submit the form to do the upload. Let us know if this doesn't fix the problem.
Thanks, J.
galaxy-dev@lists.galaxyproject.org