Hello, Are you able to run `qstat -x` on the command line on the remote system? What's the output? --nate On Thu, Mar 6, 2014 at 1:01 PM, ngsflow@hygenomics.com <ngsflow@hygenomics.com> wrote:

hi all:

galaxy.jobs.runners.cli_job.torque WARNING 2014-03-07 11:23:33,764 No valid qstat XML return from `qstat -x`, got the following:

galaxy.jobs.runners ERROR 2014-03-07 11:23:33,765 Unhandled exception checking active jobs

Traceback (most recent call last):

File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/__init__.py", line 339, in monitor

self.check_watched_items()

File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/cli.py", line 150, in check_watched_items

job_states = self.__get_job_states()

File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/cli.py", line 202, in __get_job_states

job_states.update(job_interface.parse_status(cmd_out.stdout, job_ids))

TypeError: 'NoneType' object is not iterable

#qmgr -c "p q batch"

create queue batch set queue batch queue_type = Execution set queue batch enabled = True set queue batch started = True

Finish the torque tasks ， throw exceptions in the log file。 ________________________________ ngsflow@hygenomics.com

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