This is likely an issue with using active vs. passive FTP. Unfortunately
since you're not using `--net=host` you can't use passive ftp (at least
it's never worked for me). Perhaps sftp on port 8022 will work better.
--
Devon Ryan, Ph.D.
Email: dpryan(a)dpryan.com
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany
<devon.ryan(a)dzne.de>
On Fri, Jun 23, 2017 at 1:06 PM, Md. Rezaul Karim <
rezaul.karim(a)insight-centre.org> wrote:
Timeout detected. (data connection)
Could not retrieve directory listing
Error listing directory '/'.
However, when I tried from Ubuntu terminal it gets connected. However, I
am getting below error:
asif@ubuntu:~$ ftp 10.196.106.60 8021
Connected to 10.196.106.60.
220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
Name (10.196.106.60:asif): rezaul.karim(a)insight-centre.org
331 Password required for rezaul.karim(a)insight-centre.org
Password:
230 User rezaul.karim(a)insight-centre.org logged in
Remote system type is UNIX.
Using binary mode to transfer files.
ftp> ls
500 Illegal PORT command
ftp: bind: Address already in use
ftp> quit
221 Goodbye.
Regards,
_________________________________
*Md. Rezaul Karim*, BSc, MSc
Researcher, INSIGHT Centre for Data Analytics
National University of Ireland, Galway
IDA Business Park, Dangan, Galway, Ireland
Web:
http://www.reza-analytics.eu/index.html
<
http://139.59.184.114/index.html>
On 23 June 2017 at 12:01, Devon Ryan <dpryan(a)dpryan.com> wrote:
> Do you get an error of some sort?
>
> --
> Devon Ryan, Ph.D.
> Email: dpryan(a)dpryan.com
> Data Manager/Bioinformatician
> Max Planck Institute of Immunobiology and Epigenetics
> Stübeweg 51
> 79108 Freiburg
> Germany
> <devon.ryan(a)dzne.de>
>
> On Fri, Jun 23, 2017 at 12:33 PM, Md. Rezaul Karim <
> rezaul.karim(a)insight-centre.org> wrote:
>
>> Hi Devon,
>>
>> I tried to connect to Galaxy instance with FTP client WinSCP as follows:
>>
>> [image: Inline images 1]
>>
>> But no luck. Even I tried with the DNS (i.e.
>>
http://bioopenergalaxy.insight-centre.org/) and changing SFTP to FTP
>> and tried with port number 21 and 8021 too.
>>
>>
>>
>>
>> Regards,
>> _________________________________
>> *Md. Rezaul Karim*, BSc, MSc
>> Researcher, INSIGHT Centre for Data Analytics
>> National University of Ireland, Galway
>> IDA Business Park, Dangan, Galway, Ireland
>> Web:
http://www.reza-analytics.eu/index.html
>> <
http://139.59.184.114/index.html>
>>
>> On 23 June 2017 at 11:05, Md. Rezaul Karim <
>> rezaul.karim(a)insight-centre.org> wrote:
>>
>>> Ok, thanks for the clarification. I will try again and get back to you.
>>>
>>>
>>>
>>> On Jun 23, 2017 11:03 AM, "Devon Ryan" <dpryan(a)dpryan.com>
wrote:
>>>
>>>> If your user is an admin then yes. Each user can use their normal
>>>> login credentials.
>>>> --
>>>> Devon Ryan, Ph.D.
>>>> Email: dpryan(a)dpryan.com
>>>> Data Manager/Bioinformatician
>>>> Max Planck Institute of Immunobiology and Epigenetics
>>>> Stübeweg 51
>>>> 79108 Freiburg
>>>> Germany
>>>>
>>>>
>>>> On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim
>>>> <rezaul.karim(a)insight-centre.org> wrote:
>>>> > Did you mean using the admin user email id and the password?
>>>> >
>>>> > Regards,
>>>> > _________________________________
>>>> > Md. Rezaul Karim, BSc, MSc
>>>> > Researcher, INSIGHT Centre for Data Analytics
>>>> > National University of Ireland, Galway
>>>> > IDA Business Park, Dangan, Galway, Ireland
>>>> > Web:
http://www.reza-analytics.eu/index.html
>>>> >
>>>> > On 23 June 2017 at 10:44, Devon Ryan <dpryan(a)dpryan.com>
wrote:
>>>> >>
>>>> >> You should be able to login with the email address and password
that
>>>> >> you use for Galaxy then. That works for my instances at least.
>>>> >> --
>>>> >> Devon Ryan, Ph.D.
>>>> >> Email: dpryan(a)dpryan.com
>>>> >> Data Manager/Bioinformatician
>>>> >> Max Planck Institute of Immunobiology and Epigenetics
>>>> >> Stübeweg 51
>>>> >> 79108 Freiburg
>>>> >> Germany
>>>> >>
>>>> >>
>>>> >> On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim
>>>> >> <rezaul.karim(a)insight-centre.org> wrote:
>>>> >> > Hi Devon,
>>>> >> >
>>>> >> > Yes, I'm running the galaxy-docker-stable from Björn
and my
>>>> RiboGalaxy
>>>> >> > is
>>>> >> > built on top of it (version 17.05). My system admin has
provided
>>>> me with
>>>> >> > the
>>>> >> > IP address of this DNS and when I issue the FTP command as
>>>> follows:
>>>> >> >
>>>> >> > asif@ubuntu:~$ ftp 10.196.106.60 8021
>>>> >> >
>>>> >> > It shows:
>>>> >> >
>>>> >> > Connected to 10.196.106.60.
>>>> >> > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP)
>>>> [::ffff:172.17.0.2]
>>>> >> > Name (10.196.106.60:asif):
>>>> >> >
>>>> >> > It seems ProFTPD is already configured. While running the
>>>> container,
>>>> >> > port
>>>> >> > 8021 was mapped to 21.
>>>> >> >
>>>> >> >
>>>> >> > Regards,
>>>> >> > _________________________________
>>>> >> > Md. Rezaul Karim, BSc, MSc
>>>> >> > Researcher, INSIGHT Centre for Data Analytics
>>>> >> > National University of Ireland, Galway
>>>> >> > IDA Business Park, Dangan, Galway, Ireland
>>>> >> > Web:
http://www.reza-analytics.eu/index.html
>>>> >> >
>>>> >> > On 23 June 2017 at 10:30, Devon Ryan
<dpryan(a)dpryan.com> wrote:
>>>> >> >>
>>>> >> >> Are you using galaxy-docker-stable from Björn
>>>> >> >> (
https://github.com/bgruening/docker-galaxy-stable) or
did you
>>>> make
>>>> >> >> your own dockerized-Galaxy version? Björn's runs
proFTPd by
>>>> default,
>>>> >> >> so if you're using it then ensure that's
running in the
>>>> container.
>>>> >> >>
>>>> >> >> Devon
>>>> >> >> --
>>>> >> >> Devon Ryan, Ph.D.
>>>> >> >> Email: dpryan(a)dpryan.com
>>>> >> >> Data Manager/Bioinformatician
>>>> >> >> Max Planck Institute of Immunobiology and Epigenetics
>>>> >> >> Stübeweg 51
>>>> >> >> 79108 Freiburg
>>>> >> >> Germany
>>>> >> >>
>>>> >> >>
>>>> >> >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
>>>> >> >> <rezaul.karim(a)insight-centre.org> wrote:
>>>> >> >> > Dear All,
>>>> >> >> >
>>>> >> >> > I have Dockerized the Galaxy and it's running
as a
>>>> containerized
>>>> >> >> > application
>>>> >> >> > on the DC/OS server. It can be accessed at
>>>> >> >> >
http://bioopenergalaxy.insight-centre.org/.
>>>> >> >> >
>>>> >> >> > However, I'm wondering how to FTP files on it.
Please note
>>>> that I
>>>> >> >> > have
>>>> >> >> > the
>>>> >> >> > following configuration on the galaxy.ini file:
>>>> >> >> >
>>>> >> >> > # This should point to a directory containing
subdirectories
>>>> matching
>>>> >> >> > users'
>>>> >> >> > identifier (defaults to e-mail), where Galaxy will
look for
>>>> files.
>>>> >> >> > ftp_upload_dir = /export/ftp
>>>> >> >> >
>>>> >> >> > # This should be the hostname of your FTP server,
which will be
>>>> >> >> > provided
>>>> >> >> > to
>>>> >> >> > users in the help text.
>>>> >> >> > ftp_upload_site =
bioopenergalaxy.insight-centre.org
>>>> >> >> >
>>>> >> >> >
>>>> >> >> > Any help or pointer would be highly appreciated.
>>>> >> >> >
>>>> >> >> >
>>>> >> >> >
>>>> >> >> >
>>>> >> >> > Regards,
>>>> >> >> > _________________________________
>>>> >> >> > Md. Rezaul Karim, BSc, MSc
>>>> >> >> > Researcher, INSIGHT Centre for Data Analytics
>>>> >> >> > National University of Ireland, Galway
>>>> >> >> > IDA Business Park, Dangan, Galway, Ireland
>>>> >> >> > Web:
http://www.reza-analytics.eu/index.html
>>>> >> >> >
>>>> >> >> >
___________________________________________________________
>>>> >> >> > Please keep all replies on the list by using
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>>>> >> >> > in your mail client. To manage your subscriptions
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>>>> >> >> > and other Galaxy lists, please use the interface
at:
>>>> >> >> >
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>>>> >> >> >
>>>> >> >> > To search Galaxy mailing lists use the unified
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>>>> >> >> >
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>>>> >> >
>>>> >> >
>>>> >
>>>> >
>>>>
>>>
>>
>