input for GATK DepthOfCoverage
Hi Galaxy Team, I'm trying to use GATK DepthOfCoverage, and to give a BAM file of alined results as input. My steps were: 1. BWA alignment 2. SAM-to-BAM 3. rmdup. when I'm trying to give 3 (rmdup results) as an input to GATK DepthOfCoverage, an error appears: " Sequences are not currently available for the specified build." What did I do wrong? Many thanks! Lilach
I fixed it, Thanks. It was because I aligned to different genomes in BWA and GATK steps 2012/4/3 Lilach Friedman <lilachfr@gmail.com>
Hi Galaxy Team, I'm trying to use GATK DepthOfCoverage, and to give a BAM file of alined results as input.
My steps were: 1. BWA alignment 2. SAM-to-BAM 3. rmdup.
when I'm trying to give 3 (rmdup results) as an input to GATK DepthOfCoverage, an error appears: " Sequences are not currently available for the specified build."
What did I do wrong?
Many thanks! Lilach
participants (1)
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Lilach Friedman