- Metabolomics - lists.galaxyproject.org

[News] W4E2023 - Pre-registration open for the next Workflow4Experimenters workshop
by Melanie Petera 16 Nov '22

16 Nov '22

Dear all, Analyze your data with Galaxy and the Workflow4metabolomics infrastructure! [cid:image003.jpg@01D8F9D3.F5C6C5D0] The next Workflow4Experimenters session (W4E2023) will take place remotely (March 6-10, 2023) for the theory and in Paris - France (March 20-24, 2023) for the practical sessions. During this week of training, you will learn how to use the W4M infrastructure and analyze your own data (LC-MS, GC-MS, or NMR). Detailed information about this school can be found here<https://drive.google.com/file/d/1qGM1aAaLG_eLUUhjzGPgWeU0SrdnXK45/view?usp=…>. See you soon on W4M The W4M coreteam

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New year of Galaxy metabolomics calls
by Melanie Föll 07 Oct '22

07 Oct '22

Dear all, I hope you are well and had a good summer break. I would like to announce the Galaxy metabolomics call meeting schedule for the next year. We'll again meet via Zoom bi-monthly on the last Thursday of the month at 2 pm central european time. November 24: 2pm CET: Matthias Bernt from Helmholtz-Centre for Environmental Research in Leipzig will speak about "Continuous integration on Galaxy tool repositories" & time for updates from everyone who has something to share January 26: 2pm CET: tba March 30: 2pm CEST: tba May 25: 2pm CEST: tba July: Mass spectrometry BOF at GCC Please let me know if you would like to present at one of these dates. We could also schedule 2 shorter presentations for one meeting. Also, if you have suggestions for external speakers, please send them my way. I will share the Zoom link in a separate email before the first call. I am looking forward to catch up with all of you. Best wishes, Melanie

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Galaxy Metabolomics call tomorrow
by Melanie Föll 01 Jun '22

01 Jun '22

Dear all, just a short reminder that we have our Galaxy Metabolomics call tomorrow (June 2) 2pm CEST Dan Blankenberg (Cleveland Clinic Lerner Research Institute) will present on how to create and use Galaxy Interactive Tools. Zoom Meeting Link: https://us02web.zoom.us/j/81190084493?pwd=cEJBUmFsZHppcnFjTE5vcGV3aTZVQT09 Meeting ID: 811 9008 4493 Passcode: 649449 See you tomorrow. Best wishes, Melanie

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Moving next metabolomics call to June 2
by Melanie Föll 08 May '22

08 May '22

Hi all, apologies for the late notice: we'll move the metabolomics call from May 12 to June 2. So no call this week. On June 2nd at 2pm CEST, Dan Blankenberg (Cleveland Clinic Lerner Research Institute) will present on how to create and use Galaxy Interactive Tools. While this is not a metabolomics specific topic, I expect that we will gain insights into Galaxy tool development that will also benefit our community. Zoom Meeting Link: https://us02web.zoom.us/j/81190084493?pwd=cEJBUmFsZHppcnFjTE5vcGV3aTZVQT09 Meeting ID: 811 9008 4493 Passcode: 649449 I am looking forward to seeing you on the call. Best wishes, Melanie

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Open Positions at RECETOX
by Helge Hecht 15 Mar '22

15 Mar '22

Dear all, We currently have an open position for Bioinformaticians working with Mass Spectrometry data and Galaxy – please see the attached description for further information. If this would be interesting for you or someone you know, please feel free to share this and contact us via an e-application under this link Software Developer (R/Python/Galaxy) | Masaryk University (muni.cz)<https://www.muni.cz/en/about-us/careers/vacancies/66059> or one of the contacts provided in the document. Thank you very much! Best, Helge Hecht, M.Sc. Spectrometric Data Processing & Analysis [logo Masarykova univerzita – Sci] Masarykova univerzita | Přírodovĕdecká fakulta RECETOX A: Kamenice 753/5 | 625 00 Brno W: www.recetox.muni.cz<http://www.recetox.muni.cz/>

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Slides from today and small update
by Melanie Föll 10 Mar '22

10 Mar '22

Hi all, I uploaded Claire's Slides from today to our google drive folder: https://drive.google.com/drive/u/0/folders/1StrW187h5b1cXif6xJ7cSNa_67sblNy4. A few of you might already be part of ELIXIR, for those just click the button "join this community": https://elixir-europe.org/communities/metabolomics and keep us updated to get involved into ELIXIR metabolomics.For all others, I'm in contact with Katharina Heil about how we can connect with ELIXIR. The next Galaxy metabolomics call will be May 12th. Please let me know in case you want to present or have a suggestion for external speakers. All the best, Melanie

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Job offer - Post doctoral fellowship in mass spectrometry data processing
by Melanie Petera 10 Mar '22

10 Mar '22

Greetings, Please find attached information about a temporary position we offer at my laboratory's location (Clermont-Ferrand, FRANCE). This job offer enters into the MetaboHUB 2021-2025 objectives, and is related to DDA-MS and DIA-MS data extraction in the context of high-throughput Metabolomics analysis. Do not hesitate to contact contact-pfem(a)inrae.fr<mailto:contact-pfem@inrae.fr> for further information. Best regards, Mélanie Pétéra [Bloc-Logo-Signature-INRAE] [cid:image002.png@01D83492.521F4440] Mélanie PETERA Ingénieur statisticien melanie.petera(a)inrae.fr<mailto:.petera@inrae.fr> Tél. : +33 4 73 62 47 89 Unité de Nutrition Humaine / Plate-Forme d'Exploration du Métabolisme MetaboHUB - Clermont Centre INRAE Clermont-Auvergne-Rhône-Alpes - Site de Theix 63122 Saint Genès Champanelle France inrae.fr MetaboHUB<https://www.metabohub.fr/> PFEM<https://eng-pfem.isc.inrae.fr/> Workflow4Metabolomics<https://workflow4metabolomics.org/> [cid:image003.png@01D83492.521F4440]

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Galaxy metabolomics call this Thursday (March 10th)
by Melanie Föll 08 Mar '22

08 Mar '22

Dear all, please find below the Zoom link for the Galaxy Metabolomics Call this Thursday, March 10th at 2pm CET. Claire O’Donovan (EMBL-EBI, UK) will present on "Metabolights and it’s community". I am looking forward to Claire's talk and seeing you all on Thursday. Best wishes, Melanie Zoom link: https://uni-freiburg.zoom.us/j/69841228126?pwd=TTdrUjFOcXVTTEV1em9VN203MHNI… Meeting-ID: 698 4122 8126 Kenncode: 6BNZr6Tgc

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Galaxy Metabolomics Call this Thursday
by Melanie Föll 18 Jan '22

18 Jan '22

Dear all, please find below the Zoom link for the Galaxy Metabolomics Call this Thursday, January 20th at 2pm CET. Helge Hecht (RECETOX, CZ) will give a presentation about their Galaxy pipeline developments (mainly GC-MS) and we might get a quick update by Carolin Huber on the opentims work that happened during the metaRbolomics hackathon. I hope to see you on Thursday. Best wishes, Melanie https://us02web.zoom.us/j/86303589614?pwd=UExmR1U5djVUZFVIeHJnbEFkZ3VlZz09 Meeting-ID: 863 0358 9614 Kenncode: 717064

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Galaxy Metabolomics call moved to January 20th
by Melanie Föll 14 Dec '21

14 Dec '21

Dear all, the next meeting will be one week later than originally planned. On January 20th, 2pm CET we will have a presentation by Helge Hecht about their Galaxy pipeline developments (mainly GC-MS). Furthermore, Carolin Huber will give us a quick insight into the opentims work that happened as part of the metaRbolomics hackathon. Looking forward to seeing you all next year. I wish you a happy holiday season, Melanie

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