- Metabolomics - lists.galaxyproject.org

Galaxy Metabolomics call tomorrow
by Melanie Föll 25 Nov '21

25 Nov '21

Dear all, I would like to invite you to the Galaxy Metabolomics Call tomorrow: https://us02web.zoom.us/j/86268278312?pwd=RmhkcmJvV01kVHR3a00xdzEzRmRFdz09 <https://www.google.com/url?q=https%3A%2F%2Fus02web.zoom.us%2Fj%2F8626827831…> Meeting-ID: 862 6827 8312 Kenncode: 519223 I am looking forward to seeing you tomorrow, Melanie

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Upcoming call on November 25
by Melanie Föll 18 Nov '21

18 Nov '21

Dear all, this is a reminder that the next call is on November 25th 2pm CET. We will have a summary of the metaRbolomics Hackathon but could still hold a (scientific) presentation of 10 to 20 min. Please let me know if you are interested in presenting. Best, Melanie p.s. I will send the zoom link shortly before the meeting.

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Error using HMDB-Search tool
by guptapooja.mini＠gmail.com 28 Oct '21

28 Oct '21

Dear Metabolomics Galaxy Team, I have been trying to use HMDB-Search tool (using my gmail account: guptapooja.mini(a)gmail.com) but unfortunately, I get no result (0 line, but job turns green). I get the following message ‘Testing HMDB server connexion (1 time(s) )... Error POSTing http://specdb.wishartlab.com/ms/search.csv: Internal Server Error at /opt/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/fgiacomoni/hmdb_ms_search/63ba1cb240b7/hmdb_ms_search/lib/hmdb.pm line 27’ Could you please help me resolve this error? Thank you. Best wishes, Pooja

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Galaxy Metabolomics tools during Paper Cuts
by Melanie Föll 18 Oct '21

18 Oct '21

Dear all, as decided in our last call, we will now use the monthly Galaxy paper cuts day to continue working on the Galaxy metabolomics tool list that we had started during GCC CoFest. For the first time we will do this on Thursday, October 21st. We start with our own zoom call at 9 am CEST to explain and distribute tasks: https://us02web.zoom.us/j/88224419803?pwd=cE5sNTBmVnk5T2hnUms5aktyYXFEQT09 Otherwise we communicate via the metabolomics gitter channel: https://gitter.im/usegalaxy-eu/metabolomics. Cheers, Melanie

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Updates Galaxy metabolomics calls
by Melanie Föll 14 Sep '21

14 Sep '21

Dear all, just a short update: We will move the November call from 11, which is a holiday in France, to November 25th. We will get a summary about the metaRbolomics Hackathon by Steffen Neumann and maybe also participants of the workshop. Registration is still open for those interested: https://events.ipb-halle.de/event/95 In addition, we could still hold a (scientific) presentation. Please let me know in case you are interested in presenting in this or any of the upcoming calls (13.1.,10.3.,12.5.2022). Cheers, Melanie

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zoom link for now
by Melanie Föll 09 Sep '21

09 Sep '21

Topic: Metabolomics call Time: Sep 9, 2021 02:00 PM Amsterdam, Berlin, Rome, Stockholm, Vienna Join Zoom Meeting https://us02web.zoom.us/j/85169523832?pwd=SllUcUVQNk01T1BYZEt6WlVtOHNOZz09 Meeting ID: 851 6952 3832 Passcode: 905720

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Einladung: Galaxy metabolomics call - Do 9. Sep. 2021 14:00 - 15:00 (MESZ) (metabolomics@lists.galaxyproject.org)
by foellmelanie＠gmail.com 08 Sep '21

08 Sep '21

Sie wurden zum folgenden Termin eingeladen. Titel: Galaxy metabolomics call no-slide meeting to talk about updates and make a schedule/plan for future meetings Wann: Do 9. Sep. 2021 14:00 – 15:00 Mitteleuropäische Zeit - Berlin Teilnahmeinformationen: Teilnehmen mit: Google Meet https://meet.google.com/awn-swrt-hbg?hs=224 Kalender: metabolomics(a)lists.galaxyproject.org Wer * foellmelanie(a)gmail.com - Organisator * metabolomics(a)lists.galaxyproject.org Termininformationen: https://calendar.google.com/calendar/event?action=VIEW&eid=MWFkaWVlZW85cXZr… Einladung von Google Kalender: https://calendar.google.com/calendar/ Sie erhalten diese E-Mail unter metabolomics(a)lists.galaxyproject.org, da Sie ein Gast bei diesem Termin sind. Lehnen Sie diesen Termin ab, um keine weiteren Informationen zu diesem Termin zu erhalten. Sie können auch unter https://calendar.google.com/calendar/ ein Google-Konto erstellen und Ihre Benachrichtigungseinstellungen für Ihren gesamten Kalender steuern. Wenn Sie diese Einladung weiterleiten, kann jeder Empfänger eine Antwort an den Organisator senden und zur Gästeliste hinzugefügt werden. Außerdem könnte er weitere Nutzer einladen und Ihre Antwort ändern. Weitere Informationen: https://support.google.com/calendar/answer/37135#forwarding

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New Galaxy metabolomics calls
by Melanie Föll 02 Sep '21

02 Sep '21

Hi all, I hope you had a nice summer. It's time to re-start our bi-monthly Galaxy metabolomics calls. As before, we will meet every second month, on the second Thursday at 2pm CE(S)T. These are the planned dates: 2021: 9.9. ,11.11. 2022: 13.1.,10.3.,12.5. This is complementary to the Galaxy proteomics meetings which will take place in October, December, February, April and June. To join those please contact Pratik: pjagtap(a)umn.edu. Please let me know if you already know when you would like to present or if you have a suggestion for an external speaker which we could invite. As the next meeting is already in one week, I suggest we have a slide-free meeting and just talk about updates in our groups and the work some of us did during GCC hackathon. Hope to see you soon, Melanie

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Fwd: Job opportunities in Computational Metabolomics
by Elliott Price 11 Aug '21

11 Aug '21

---------- Forwarded message --------- HI all- The Pacific Northwest National Laboratory is engaging in strategic hiring of talented researchers focused on the development of advanced methods for computational metabolomics. We are looking for early career researchers to contribute to ongoing research programs as well as a Team Leader, who will build programs and have a line management role. Please see the attached flyers and forward to anyone you know who may be interested. If you have questions or interest, please contact me directly or reach out to our recruiter who is listed on the flyers. Thank you very much, Katrina __________________________________________________ *Katrina Waters, PhD **(she/her)* Director, Laboratory Fellow Biological Sciences Division Pacific Northwest National Laboratory 902 Battelle Boulevard P.O. Box 999, MSIN J4-18 Richland, WA 99352 USA Tel: 509-375-3907 Fax: 509-372-4720 katrina.waters(a)pnnl.gov www.pnnl.gov *“For there is always light if only we’re brave enough to see it, if only we’re brave enough to be it.” – Amanda Gorman*

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two Galaxy meeting invitations
by Melanie Föll 01 Jul '21

01 Jul '21

Hi all, during the Galaxy conference there will be a joint Galaxy metabolomics and proteomics meeting to discuss the current state and the future of the communities. Regardless of the Galaxy conference attendance the meeting is open to everyone interested: Wednesday July 7th 3.20pm CEST to 4.40pm: https://umn.zoom.us/j/98449669068?pwd=WlQwWW5mbGt5MlJCYzlNYjhTSFpvUT09 (ID: 98449669068, password: XE6UD7) And a quick reminder about today's meeting to prepare CoFest: Thursday 1st July 12 pm CEST via Zoom: https://northeastern.zoom.us/j/99385202340?pwd=a0FWSW5XbVV6bkFrYXRoZDZOVjI5… Meeting-ID: 993 8520 2340 Kenncode: 283064 Hope to see you there, Melanie

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