- Metabolomics - lists.galaxyproject.org

Fw: Invitation to GCC2024: Join Us for the Galaxy Community Conference!
by Helge Hecht 01 Mar '24

01 Mar '24

[A black and white image of a city Description automatically generated] Hello, Galaxy Community! We are thrilled to invite you to the 2024 Galaxy Community Conference (GCC2024)! Join us in the beautiful city of Brno, Czech Republic, from June 24th to 29th, 2024, for an unforgettable experience of learning, collaboration, and networking. We encourage you to take advantage of our early bird registration discounted rates, which ends today March 1st at midnight. For more information and to register or submit an abstract, please see the GCC2024 website<https://galaxyproject.org/events/gcc2024/>. Why Attend GCC2024? * Engaging Sessions: Dive into a diverse range of sessions covering cutting-edge research, innovative tools and workflows, and best practices in data analysis. * Inspiring Keynotes: Be inspired by keynote speakers who are at the forefront of their fields, sharing their insights and vision for the future of Galaxy and open science. * Interactive Workshops: Enhance your skills and knowledge through hands-on workshops and training sessions led by experts in the field. * Networking Opportunities: Connect with fellow Galaxy users, developers, and contributors from around the world, forging new collaborations and sharing experiences. * Social Events: Unwind and have fun at our networking and social events, where you can relax, mingle, and enjoy the company of your peers in a casual setting. Scholarship Opportunities: We are thrilled to announce the JXTX + GCC2024 Scholarship, a collaboration between the JXTX Foundation<https://jxtxfoundation.org/> and the Galaxy Project<https://galaxyproject.org/>. This scholarship will support six outstanding graduate students in genomics and data sciences and offers a unique opportunity for students to attend the 2024 Galaxy Community Conference in Brno, Czech Republic, furthering their knowledge and networking within the field! The scholarship will be awarded in two tiers: • The first tier will be awarded to three individuals and will cover conference registration plus transportation to and from the conference (up to 1,000€). • The second tier will be awarded to three individuals and will cover conference registration only. Key Dates: • Deadline for application: March 31, 2024 • Winners announced: April 10, 2024 Applicants should plan to present their work at the conference as a talk or a poster. This scholarship presents an excellent opportunity for students to showcase their research and engage with a diverse community of professionals and researchers. For more information on how to apply, please visit the JXTC + GCC2024 Scholarship page<https://jxtxfoundation.org/news/2024-2-19-gcc/>. We encourage all eligible students to apply and look forward to receiving your applications and abstracts! Training and Workshop Opportunities: This year's conference will feature a comprehensive array of over 30 training sessions catering to various interests and expertise levels: * Trainings for Newcomers: Designed to provide an introduction to Galaxy and help new users navigate the platform with ease. * Trainings for Domain Scientists: Explore specialized sessions tailored to the needs of domain scientists, enhancing their capabilities and understanding. * Trainings for Educators: Learn effective strategies for incorporating Galaxy into educational settings, fostering a collaborative and interactive learning environment. * Trainings for Tool Developers: Dive deep into sessions focused on tool development, enabling developers to create and optimize tools within the Galaxy framework. * Trainings for Systems Administrators and Software Engineers: Gain insights into system administration and software engineering specific to Galaxy, ensuring a robust and efficient implementation. To view the complete list of training sessions, please visit the GCC2024 website<https://galaxyproject.org/events/gcc2024/training/>. Don't miss out on this opportunity to join a diverse community of researchers, developers, and Galaxy users from around the world! Thank you for using Galaxy; see you in Brno! Bluesky<https://bsky.app/profile/galaxyproject.bsky.social> | Mastodon<https://mstdn.science/@galaxyproject> | LinkedIn<https://www.linkedin.com/company/galaxy-project>

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REGISTER - ELIXIR Metabolomics Community F2F/hybrid meeting: DL: 03/10/2023
by Katharina F Heil 29 Sep '23

29 Sep '23

Dear all, ELIXIR Metabolomics Community members, This is to let you know that we have extended the F2F registration deadline for the Metabolomics Community F2F in Heidelberg until next week Tuesday, October 3rd, 2023. Register for the Metabolomics Community and Industry F2F/hybrid Meeting 16-18 October 2023 | Hybrid - Heidelberg, Germany Registration deadline - UPDATED: Tuesday, 03 October (in person) | 15 October (online) The meeting combines the Metabolomics Community F2F as well as a metabolomics industry meeting. The first part will focus on Community activities and possibly an updated white paper/roadmap. The second part will focus on metabolomics industry relations, and includes industry representatives from across the world. Find out more and register now <https://elixir-events.eventscase.com/attendance/event/index/43358/EN>» https://elixir-events.eventscase.com/attendance/event/index/43358/EN An agenda will be made available very soon but you can count with Community updates, planning ahead and the 2nd day on industry collaborations and engagement. Let us know if you have questions related to the programme prior to registering. With best wishes, Katharina Dr. Katharina F Heil <mailto:katharina.heil@elixir-europe.org> ELIXIR Communities & Programme Manager Communities & Training www.elixir-europe.org <http://www.elixir-europe.org/> ELIXIR Hub, South Building Wellcome Genome Campus Hinxton, Cambridge, CB10 1SD, UK E-Mail: katharina.heil(a)elixir-europe.org <mailto:katharina.heil@elixir-europe.org> <http://www.elixir-europe.org/>

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FW: Einladung: MS BoF: GCC2023 - Do 13. Jul. 2023 17:30 - 18:30 (AEST) (bjoern.gruening@gmail.com)
by Helge Hecht 11 Jul '23

11 Jul '23

-----Original Message----- From: Björn Grüning <bjoern.gruening(a)gmail.com> Sent: Tuesday, July 11, 2023 9:34 AM To: Helge Hecht <helge.hecht(a)recetox.muni.cz> Subject: Fwd: Einladung: MS BoF: GCC2023 - Do 13. 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Jul. 2023 17:30 - 18:30 (AEST) (bjoern.gruening(a)gmail.com) From: Pratik Jagtap <pjagtap(a)umn.edu> To: bjoern.gruening(a)gmail.com, c.hyde(a)qcif.edu.au, dan.blankenberg(a)gmail.com, foellmelanie(a)gmail.com, g.price(a)qfab.org, jj(a)umn.edu, johan(a)biocommons.org.au, m.bernt(a)ufz.de, matt.chambers42(a)gmail.com, oliver.schilling(a)mol-med.uni-freiburg.de, rajcz001(a)umn.edu, smehta(a)umn.edu, surbhibihani1996(a)gmail.com, Timothy Griffin <tgriffin(a)umn.edu>, yves.vandenbrouck(a)cea.fr, carlos.horro(a)uib.no, matthias.fahrner(a)uniklinik-freiburg.de, valentin.loux(a)inra.fr Content-Type: multipart/mixed; boundary="00000000000036e59006002a561d" MS BoF: GCC2023 Sie wurden von Pratik Jagtap zum Termin „MS BoF: GCC2023“ am Donnerstag 13. Jul. 2023 ⋅ 17:30 – 18:30 (Ostaustralische Normalzeit - Brisbane) eingeladen. Wann Donnerstag 13. Jul. 2023 ⋅ 17:30 – 18:30 (Ostaustralische Normalzeit - Brisbane) Standort https://t.co/OeoOel1lXl Karte anzeigen <https://www.google.com/url?q=https%3A%2F%2Ft.co%2FOeoOel1lXl&sa=D&source=ca…> Gäste Pratik Jagtap <mailto:pjagtap@umn.edu>- Organisator bjoern.gruening(a)gmail.com <mailto:bjoern.gruening@gmail.com> c.hyde(a)qcif.edu.au <mailto:c.hyde@qcif.edu.au> dan.blankenberg(a)gmail.com <mailto:dan.blankenberg@gmail.com> foellmelanie(a)gmail.com <mailto:foellmelanie@gmail.com> g.price(a)qfab.org <mailto:g.price@qfab.org> jj(a)umn.edu <mailto:jj@umn.edu> johan(a)biocommons.org.au <mailto:johan@biocommons.org.au> m.bernt(a)ufz.de <mailto:m.bernt@ufz.de> matt.chambers42(a)gmail.com <mailto:matt.chambers42@gmail.com> oliver.schilling(a)mol-med.uni-freiburg.de <mailto:oliver.schilling@mol-med.uni-freiburg.de> rajcz001(a)umn.edu <mailto:rajcz001@umn.edu> smehta(a)umn.edu <mailto:smehta@umn.edu> surbhibihani1996(a)gmail.com <mailto:surbhibihani1996@gmail.com> Timothy Griffin <mailto:tgriffin@umn.edu> yves.vandenbrouck(a)cea.fr <mailto:yves.vandenbrouck@cea.fr> carlos.horro(a)uib.no <mailto:carlos.horro@uib.no> matthias.fahrner(a)uniklinik-freiburg.de <mailto:matthias.fahrner@uniklinik-freiburg.de> valentin.loux(a)inra.fr <mailto:valentin.loux@inra.fr> Alle Gästeinformationen ansehen <https://calendar.google.com/calendar/event?action=VIEW&eid=Nmg3NmR0djM4dTY0…> Für bjoern.gruening(a)gmail.com <mailto:bjoern.gruening@gmail.com> antworten Ja <https://calendar.google.com/calendar/event?action=RESPOND&eid=Nmg3NmR0djM4d…> Nein <https://calendar.google.com/calendar/event?action=RESPOND&eid=Nmg3NmR0djM4d…> Vielleicht <https://calendar.google.com/calendar/event?action=RESPOND&eid=Nmg3NmR0djM4d…> Weitere Optionen <https://calendar.google.com/calendar/event?action=VIEW&eid=Nmg3NmR0djM4dTY0…> Einladung von Google Kalender <https://calendar.google.com/calendar/> Sie erhalten diese E-Mail, weil Sie Kalenderbenachrichtigungen abonniert haben. Wenn Sie diese E-Mails nicht mehr erhalten möchten, rufen Sie die Kalendereinstellungen <https://calendar.google.com/calendar/r/settings> auf, wählen Sie diesen Kalender aus und ändern Sie „Andere Benachrichtigungen“. Wenn Sie diese Einladung weiterleiten, kann jeder Empfänger eine Antwort an den Organisator senden und zur Gästeliste hinzugefügt werden. Außerdem könnte er weitere Nutzer einladen und Ihre Antwort ändern. Weitere Informationen <https://support.google.com/calendar/answer/37135#forwarding>

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Galaxy Metabolomics Community Call 25.05. 14:00 CEST
by Helge Hecht 25 May '23

25 May '23

Dear all, I apologize for distributing the wrong zoom link. Here is the updated one: https://us06web.zoom.us/j/84301740848?pwd=NWROb0pDdDJFajZSbnVUazNsRUdxZz09 Meeting ID: 843 0174 0848 Passcode: 289398 Best Dear all, we’re pleased to announce the next Galaxy Metabolomics Community call taking place next Thursday the 25th of May at 2pm CEST (Event Time Announcer - Galaxy Metabolomics Community Call (timeanddate.com)<https://www.timeanddate.com/worldclock/fixedtime.html?msg=Galaxy+Metabolomi…>) on Zoom. We are having Niek de Jonge as our invited speaker who will be presenting his software tool “MS2Query: reliable and scalable MS2 mass spectra-based analogue search” (https://www.nature.com/articles/s41467-023-37446-4) with possibilities for future integration into Galaxy. We will also have updates from the community, including new contributions to the Galaxy Training Network as well as tool development updates. Looking forward to seeing you on the call! Best Wishes, Helge & Melanie Helge Hecht, M.Sc. Head of Department Spectrometric Data Processing & Analysis [logo Masarykova univerzita – Sci] Masarykova univerzita | Přírodovĕdecká fakulta RECETOX A: Kamenice 753/5 | 625 00 Brno T: +420 549 49 3406 W: www.recetox.muni.cz<http://www.recetox.muni.cz/>

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Galaxy Metabolomics Community Call 25.05. 14:00 CEST
by Helge Hecht 19 May '23

19 May '23

Dear all, we’re pleased to announce the next Galaxy Metabolomics Community call taking place next Thursday the 25th of May at 2pm CEST (Event Time Announcer - Galaxy Metabolomics Community Call (timeanddate.com)<https://www.timeanddate.com/worldclock/fixedtime.html?msg=Galaxy+Metabolomi…>) on Zoom. We are having Niek de Jonge as our invited speaker who will be presenting his software tool “MS2Query: reliable and scalable MS2 mass spectra-based analogue search” (https://www.nature.com/articles/s41467-023-37446-4) with possibilities for future integration into Galaxy. We will also have updates from the community, including new contributions to the Galaxy Training Network as well as tool development updates. Looking forward to seeing you on the call! Best Wishes, Helge & Melanie Helge Hecht, M.Sc. Head of Department Spectrometric Data Processing & Analysis [logo Masarykova univerzita – Sci] Masarykova univerzita | Přírodovĕdecká fakulta RECETOX A: Kamenice 753/5 | 625 00 Brno T: +420 549 49 3406 W: www.recetox.muni.cz<http://www.recetox.muni.cz/>

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Galaxy Metabolomics Community Call 25.05. 14:00 CEST
by Helge Hecht 19 May '23

19 May '23

Dear all, we’re pleased to announce the next Galaxy Metabolomics Community call taking place next Thursday the 25th of May at 2pm CEST (Event Time Announcer - Galaxy Metabolomics Community Call (timeanddate.com)<https://www.timeanddate.com/worldclock/fixedtime.html?msg=Galaxy+Metabolomi…>) on Zoom. We are having Niek de Jonge as our invited speaker who will be presenting his software tool “MS2Query: reliable and scalable MS2 mass spectra-based analogue search” (https://www.nature.com/articles/s41467-023-37446-4) with possibilities for future integration into Galaxy. We will also have updates from the community, including new contributions to the Galaxy Training Network as well as tool development updates. Looking forward to seeing you on the call! Best Wishes, Helge & Melanie Helge Hecht, M.Sc. Head of Department Spectrometric Data Processing & Analysis [logo Masarykova univerzita – Sci] Masarykova univerzita | Přírodovĕdecká fakulta RECETOX A: Kamenice 753/5 | 625 00 Brno T: +420 549 49 3406 W: www.recetox.muni.cz<http://www.recetox.muni.cz/>

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Galaxy Metabolomics Community Call
by Helge Hecht 27 Mar '23

27 Mar '23

Dear all, please find below the Zoom details for the next Galaxy metabolomics call on March 30 at 2pm CET. Mélanie Petera from MetaboHUB Clermont will speak about "Workflow4Experimenters: feedback on a 'bring your own data' Galaxy-based training". Afterwards we also have time for general updates and discussions. https://us06web.zoom.us/j/84301740848?pwd=NWROb0pDdDJFajZSbnVUazNsRUdxZz09 Meeting ID: 843 0174 0848 Passcode: 289398 We are looking forward to seeing you on Thursday. Best wishes, Melanie & Helge

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Galaxy Metabolomics Call March 30
by Melanie Föll 27 Mar '23

27 Mar '23

Dear all, please find below the Zoom details for the next Galaxy metabolomics call on March 30 at 2pm CET. Mélanie Petera from MetaboHUB Clermont will speak about “Workflow4Experimenters: feedback on a ‘bring your own data’ Galaxy-based training”. Afterwards we also have time for general updates and discussions. <https://us06web.zoom.us/j/84594450688?pwd=Nkcyd3o1enF5REhNeUVaelJaS2dYZz09> https://us06web.zoom.us/j/84301740848?pwd=NWROb0pDdDJFajZSbnVUazNsRUdxZz09 Meeting ID: 843 0174 0848 Passcode: 289398 We are looking forward to seeing you on Thursday. Best wishes, Melanie & Helge

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Galaxy metabolomics call Jan 26
by Melanie Föll 22 Jan '23

22 Jan '23

Dear all, please find below the Zoom details for the next Galaxy metabolomics call this Thursday January 26 at 2pm CET. We have invited 2 speakers: 1) Nils Hoffmann (Centrum für Biotechnologie Bielefeld) will give an overview about ongoing work on mztabm support in lipidxplorer. 2) Yvan Le Bras (Muséum National d'Histoire Naturelle Paris) will give a talk entitled "From species occurrences data to metabolomics, a FAIR approach for Ecological data management and analysis through EML, ISA & Galaxy-E" https://us06web.zoom.us/j/84301740848?pwd=NWROb0pDdDJFajZSbnVUazNsRUdxZz09 Meeting ID: 843 0174 0848 Passcode: 289398 We are looking forward to seeing you on Thursday. Best wishes, Melanie & Helge

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Galaxy metabolomics call Nov 24
by Melanie Föll 21 Nov '22

21 Nov '22

Dear all, please find below the Zoom details for the next Galaxy metabolomics call on November 24 at 2pm CET. Matthias Bernt from Helmholtz-Centre for Environmental Research in Leipzig will speak about "Continuous integration on Galaxy tool repositories", which is not directly metabolomics related but gives ideas about how we can organize the multitude of Galaxy metabolomics tools properly. Afterwards we also have time for general updates. https://us06web.zoom.us/j/84594450688?pwd=Nkcyd3o1enF5REhNeUVaelJaS2dYZz09 Meeting ID: 845 9445 0688 Passcode: 739929 I am looking forward to seeing you on Thursday. Best wishes, Melanie

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Metabolomics