October 2018 - Galaxy-training - lists.galaxyproject.org

Galaxy Training Material (online) CoFest - 15th November
by Bérénice Batut 15 Oct '18

15 Oct '18

Dear all, The Galaxy Training Network is organizing regular online CoFests (Collaboration/Contribution Fests) every 3 months on the 3rd Thursday for a day of the collaborative work on the training content. The next one will be on the 15th of November. We plan to focus on genome annotation training; but anyone who would like to contribute on any other topics is very welcome to join. We will coordinate via Hangout <https://hangouts.google.com/hangouts/_/calendar/Z2FsYXh5dW5pZnJlaWJ1cmdAZ21…> (drop-in channel we will keep open the whole day) and the GTN Gitter channel <https://gitter.im/Galaxy-Training-Network/Lobby>. More details about this event can be found on the Galaxy website (https://galaxyproject.org/events/2018-11-gtn/ <https://galaxyproject.org/events/2018-11-gtn/>) and the dedicated GitHub issue <https://github.com/galaxyproject/training-material/issues/1082>. During the day, we plan to have a GTN meeting to discuss the recent changes and future directions. To accommodate different time zones and schedules, we will have 2 calls (with similar discussions) at 7am (UTC + 2) <http://arewemeetingyet.com/Berlin/2018-11-15/07:00/GTN%20meeting> and 4pm (UTC + 2) <http://arewemeetingyet.com/Berlin/2018-11-15/16:00/GTN%20meeting> via Hangout <https://hangouts.google.com/hangouts/_/calendar/Z2FsYXh5dW5pZnJlaWJ1cmdAZ21…>. More details about the meeting will be posted on the dedicated GitHub issue <https://github.com/galaxyproject/training-material/issues/1088>. Feel free to forward this email to any potentially interested individuals and groups. We hope to see you there Best, Bérénice Batut ----------------------------------------------------------------------------------- PhD in Bioinformatics and Computational Biology Post-doc in Bioinformatics ----------------------------------------------------------------------------------- http://bebatut.fr

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Training material missing
by LI Jiaxin 08 Oct '18

08 Oct '18

Hi I found that the training material in fold 1. Galaxy Australia Training Material<https://usegalaxy.org.au/library/list#/folders/F62e701d3f176b13d> 2. RNA-Seq<https://usegalaxy.org.au/library/list#/folders/F716028a8851ce294> 3. Fly RNA-Seq KO 03 R2.Fastq are missing. ? Thanks for upload it. Best wishes! Jiaxin

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regarding transcriptome read cleaning
by Rahul Shelke 05 Oct '18

05 Oct '18

Dear sir, I am using Australia Galaxy for assembling transcriptome lib. For cleaning of Illumina nextera 500 reads, I am using a trimmomatic program. This program contains nextera paired end adapter cleaning option. Now I am confused whether I should use galaxy nextera adapter or use specific nextera 500 adapter for cleaning. Kindly provide your suggestion. -- Rahul G. Shelke PhD Scholar Department of Biosciences and Bioengineering. Indian Institute Of Technology. Guwahati,Assam, India.781039 +91-9954919129 Skype ID:- rahulshelke2

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