December 2018 - Galaxy-training - lists.galaxyproject.org

regarding transcriptome read cleaning
by Rahul Shelke 23 Mar '25

23 Mar '25

Dear sir, I am using Australia Galaxy for assembling transcriptome lib. For cleaning of Illumina nextera 500 reads, I am using a trimmomatic program. This program contains nextera paired end adapter cleaning option. Now I am confused whether I should use galaxy nextera adapter or use specific nextera 500 adapter for cleaning. Kindly provide your suggestion. -- Rahul G. Shelke PhD Scholar Department of Biosciences and Bioengineering. Indian Institute Of Technology. Guwahati,Assam, India.781039 +91-9954919129 Skype ID:- rahulshelke2

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End of 2018 Reminders: Admin Training, GCC2019 Training Topic Nominations, and GalaxyAdmins meetups topics
by Dave Clements 26 Dec '18

26 Dec '18

Happy Holidays all! A couple of reminders before 2019 arrives: - *Galaxy Admin Training <https://galaxyproject.org/events/2019-admin-training/>*, January 28-February 1. Learn best practices for installing and supporting your own Galaxy service. Split into a 2-day intro session, and a 3 day advanced session. *Advance registration ends December 31, and then rates go up by, um, a lot. Register by Monday.* - *GCC2019 Training Topic Nominations <https://galaxyproject.org/news/2018-12-gcc2019-training-nomination/> end 31 December! * Nominated topics will be voted on by the community in January. Topics nominated thus far are here <https://galaxyproject.org/events/gcc2019/training/#training-topic-nominatio…>. Please nominate new topics here <https://docs.google.com/forms/d/1fBPjEmw7Td52rhBnC0SvflnQCD7Ue5IMJ9RkM0SjnY…>, and if you want to expand on existing nominations <https://galaxyproject.org/events/gcc2019/training/#training-topic-nominatio…> you can edit the hub directly, or send the edits to me. (Note: I suspect, but don't know, that we'll extend this deadline into early January.) - *GalaxyAdmins meetups <https://galaxyproject.org/news/2018-12-galaxy-admins/>* will resume in 2019 <https://galaxyproject.org/news/2018-12-galaxy-admins/>. If you have ideas for meetup topics, please nominate them <https://docs.google.com/forms/d/e/1FAIpQLSfv257YcdQQO7gp3K4USoBzqkd-UDEblst…> . - We need your project ideas for *Google Summer of Code 2019* <https://docs.google.com/forms/d/e/1FAIpQLSfv257YcdQQO7gp3K4USoBzqkd-UDEblst…>*. *Please add your project ideas to the proposal, either directly on this page <http://gmod.org/wiki/GSOC_Project_Ideas_2019> (requires an account), of via this online form <http://bit.ly/gsoc-2019-ogi-propose>. Finally, for those of you not on Twitter, I can't resist sharing this post from Martin Čech <https://twitter.com/martenson?ref_src=twsrc%5Etfw%7Ctwcamp%5Eembeddedtimeli…> . See you in the new year, Dave C [image: 2018-12-26_12-01-57-martins-tree.png] -- https://galaxyproject.org/ https://usegalaxy.org/

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Fwd: Please nominate training topics for GCC2019 by Dec 31
by Dave Clements 05 Dec '18

05 Dec '18

Hi All, In case you missed it, the call for training topic nominations is now open. See below for details. I would particularly like to encourage people on this list to consider nominating topics. Thanks, Dave C ---------- Forwarded message --------- From: Dave Clements <clements(a)galaxyproject.org> Date: Wed, Dec 5, 2018 at 2:40 PM Subject: Please nominate training topics for GCC2019 by Dec 31 To: Galaxy Dev List <galaxy-dev(a)lists.galaxyproject.org> Cc: Bérénice Batut <berenice.batut(a)gmail.com> Hi All, The *2019 Galaxy Community Conference (GCC2019)* <https://galaxyproject.org/events/gcc2019/> will be held in be held in *Freiburg, Germany, 1-6 July*. Like previous Galaxy Community Conferences <https://galaxyproject.org/gcc/>, GCC2019 will feature invited keynotes, accepted talks, posters, demos, birds-of-a-feather gatherings and *training*. The format of GCC2019 will be a bit different than the previous years: it starts with 1 day of training and then 3 days with more specialized training sessions aligned with talks. *You can read more about the new format on the conference FAQ <https://galaxyproject.org/events/gcc2019/faq/#what-will-be-the-format-for-g…>.* *The training topics that are offered are determined by the community so BY YOU! <https://docs.google.com/forms/d/1fBPjEmw7Td52rhBnC0SvflnQCD7Ue5IMJ9RkM0SjnY…>* Please give some thought to what topics you would like to see offered, or that you would like to offer, and then submit them as topic nominations <https://docs.google.com/forms/d/1fBPjEmw7Td52rhBnC0SvflnQCD7Ue5IMJ9RkM0SjnY…> . Nominated topics can cover a wide range. For example: - Introduction to Using Galaxy - Scientific topic oriented trainings - Community specific trainings - Development and administration around Galaxy - Train the trainers This list only shows some examples. *Any topic of interest to the Galaxy Community can be nominated and you are encouraged to nominate more than one topic.* If you are looking for ideas, see the topic nominated in: 2016 <https://galaxyproject.org/news/2018-12-galaxy-update/bit.ly/gcc2016noms>, 2015 <https://galaxyproject.org/news/2018-12-galaxy-update/bit.ly/gcc2015vote>, 2014 <https://galaxyproject.org/news/2018-12-galaxy-update/bit.ly/1s6NtMN>, 2013 <https://galaxyproject.org/news/2018-12-galaxy-update/bit.ly/1i2j1gN> and the Galaxy Events page <https://galaxyproject.org/news/2018-12-galaxy-update/galaxyproject.org/even…> . Training nomination is open from *December, 1st* to *December, 31*. Topics will be compiled into a uniform list by the GCC2019 Organizing Committee, and topics will be voted on by the Galaxy Community from *January, 15th* to *January, 31st*.

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