December 2021 - Galaxy-training - lists.galaxyproject.org

regarding transcriptome read cleaning
by Rahul Shelke 23 Mar '25

23 Mar '25

Dear sir, I am using Australia Galaxy for assembling transcriptome lib. For cleaning of Illumina nextera 500 reads, I am using a trimmomatic program. This program contains nextera paired end adapter cleaning option. Now I am confused whether I should use galaxy nextera adapter or use specific nextera 500 adapter for cleaning. Kindly provide your suggestion. -- Rahul G. Shelke PhD Scholar Department of Biosciences and Bioengineering. Indian Institute Of Technology. Guwahati,Assam, India.781039 +91-9954919129 Skype ID:- rahulshelke2

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Nominate a training topic for GCC2021
by Beatriz Serrano-Solano 08 Dec '23

08 Dec '23

Hi all, We are in the process of organizing the Galaxy Community Conference 2021 <https://www.vibconferences.be/events/gcc2021> and we need your input for the training topic nominations. There is a***form* <https://docs.google.com/forms/d/e/1FAIpQLSe-tfL-sD55RQcKU0W4wfglPbcpEZDbuwG…>*that will stay open until the 29th of January*. Please nominate the topics you would like to learn about or present during the training workshops. Thank you very much! Cheers, Bea on behalf of the GCC2021 Organizing Committee

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Why do my datasets keep showing gray?
by huanglin202104＠163.com 27 Dec '21

27 Dec '21

I have successfully uploaded RNA-seq fastq.gz using FTP. Then I back to Galaxy Server, hover to the left Tools panel and simply click on: Get Data → Upload File → Choose FTP File. I can see datasets that have been successfully uploaded, but they are always grayed in History. The state is waiting to be executed. It has been 20 hours. Is this normal?

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