January 2019 - Galaxy-training - lists.galaxyproject.org

regarding transcriptome read cleaning
by Rahul Shelke 23 Mar '25

23 Mar '25

Dear sir, I am using Australia Galaxy for assembling transcriptome lib. For cleaning of Illumina nextera 500 reads, I am using a trimmomatic program. This program contains nextera paired end adapter cleaning option. Now I am confused whether I should use galaxy nextera adapter or use specific nextera 500 adapter for cleaning. Kindly provide your suggestion. -- Rahul G. Shelke PhD Scholar Department of Biosciences and Bioengineering. Indian Institute Of Technology. Guwahati,Assam, India.781039 +91-9954919129 Skype ID:- rahulshelke2

2 1

[Galaxy Community Conference] Vote for Training
by Bérénice Batut 28 Jan '19

28 Jan '19

Hi all, We are proud to announce that the Galaxy Community Conference (GCC) <https://galaxyproject.org/events/gcc2019> 2019 will be held in Freiburg <https://www.freiburg.de/> (Germany) in the Konzerthaus <https://www.konzerthaus.freiburg.de/startseite/7/de/home.html> from 1.-6. July 2019. It will start with training but also continues with training throughout the conference. The community proposed some topics but as we try to reach this year a lot more users, we are really interested it what you would like to learn. Please take a few minutes to vote which training should be offered at GCC2019: https://goo.gl/forms/iaY5AezdFpyJ0ETh2 <https://galaxyproject.org/events/gcc2019/training/> Thank you very much :-) Best, Bérénice, in behalf of the GCC organization committee PS: Feel free to forward this email to anyone who may be interested. Thanks! Bérénice Batut ----------------------------------------------------------------------------------- PhD in Bioinformatics and Computational Biology Post-doc in Bioinformatics ----------------------------------------------------------------------------------- http://bebatut.fr

1 0

GTN (online) CoFest and call on Galaxy Training Material - 21st February
by Bérénice Batut 21 Jan '19

21 Jan '19

Dear all, The Galaxy Training Network is organizing online CoFests (Collaboration/Contribution Fests) every 3 months for a day of the collaborative work on the training content. The next one will be on the 21st of February. Anyone who would like to contribute on any other topics is very welcome to join. We will coordinate via the GTN Gitter channel <https://gitter.im/Galaxy-Training-Network/Lobby> and Hangout During the day, we will also have GTN community calls to discuss the recent changes and future directions for the Galaxy Training Materials. To accommodate different time zones and schedules, we will have 2 calls (with similar discussions) at 8am (UTC + 1) <http://arewemeetingyet.com/Berlin/2019-02-21/08:00/GTN%20meeting> and 4pm (UTC + 1) <http://arewemeetingyet.com/Berlin/2019-02-21/16:00/GTN%20meeting> via Hangout <https://hangouts.google.com/hangouts/_/calendar/Z2FsYXh5dW5pZnJlaWJ1cmdAZ21…>. More details about this day can be found on the Galaxy website (https://galaxyproject.org/events/2019-02-gtn/ <https://galaxyproject.org/events/2018-11-gtn/>) and the dedicated GitHub issue <https://github.com/galaxyproject/training-material/issues/1152>. Feel free to forward this email to any potentially interested individuals and groups. We hope to see you there Best, Bérénice Batut ----------------------------------------------------------------------------------- PhD in Bioinformatics and Computational Biology Post-doc in Bioinformatics ----------------------------------------------------------------------------------- http://bebatut.fr

1 0