Galaxy-training

galaxy-training@lists.galaxyproject.org

87 discussions

Nominate a training topic for GCC2021
by Beatriz Serrano-Solano 08 Dec '23

08 Dec '23

Hi all, We are in the process of organizing the Galaxy Community Conference 2021 <https://www.vibconferences.be/events/gcc2021> and we need your input for the training topic nominations. There is a***form* <https://docs.google.com/forms/d/e/1FAIpQLSe-tfL-sD55RQcKU0W4wfglPbcpEZDbuwG…>*that will stay open until the 29th of January*. Please nominate the topics you would like to learn about or present during the training workshops. Thank you very much! Cheers, Bea on behalf of the GCC2021 Organizing Committee

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GCC2022 Deadlines Extended to June 22 and June 30!
by Dave Clements 18 Jun '22

18 Jun '22

Hello all, *The executive summary:* 1. *We have moved our registration deadline to June 22*. Register by the end of Wednesday and save 25% or $200 on your registration. 2. *Hotel rooms can now be booked through June 30*. The hotel is where the conference is, it's a good price, it's in a cool neighborhood, and it's right next to the UMN campus. And if you are wondering what GCC2022 is about... *GCC2022* <https://galaxyproject.org/gcc2022/> brings together hundreds of researchers, trainers, tool developers, software engineers, and computational infrastructure providers, all addressing common challenges in data intensive science using the Galaxy data integration and analysis platform <https://galaxyproject.org/>. *See below for links and more news.* I/We hope to see you in Minneapolis in one month! Dave C, on behalf of the GCC2022 Organizing Committee *2022 Galaxy Community Conference (GCC2022)* July 17-23, 2022 University of Minnesota, Twin Cities Minneapolis, Minnesota, United States *#UseGalaxy2022 <https://twitter.com/hashtag/UseGalaxy2022>* *Three years of waiting and we're down to one month before the #usegalaxy <https://twitter.com/hashtag/usegalaxy?src=hashtag_click> community meets in person at GCC2022! View a summary here <https://galaxyproject.org/blog/2022-06-guide-to-gcc2022/> of what to expect when you join us in Minneapolis.* *Not Registered Yet? There's Still Time!* *Registration has been EXTENDED to Wednesday, June 22 *- *register here for GCC2022 <https://galaxyproject.org/events/gcc2022/register>! * Meeting Registration Fees *Full (< June 22) * *Late (> June 23) * Student/postdoc $400 $500 Academic / Non-Profit / Government $550 $750 Industry $900 $1,150 *Michael Schatz at GCC2022* What do TIME100 <https://time.com/collection/100-most-influential-people-2022/6177818/evan-e…> and GCC2022 have in common? Michael Schatz, that's what! Come talk to him about the future, learn more about his Birds of a Feather session here <https://gcc2022.sched.com/event/13V9n>. *We have a tremendous lineup of speakers for our accepted and invited talks and training sessions! *Get to know who they are by *viewing the entire GCC2022 schedule <https://gcc2022.sched.com/>. * *Hotel Reservation Deadline EXTENDED* Be sure to make your hotel reservations <https://www.marriott.com/event-reservations/reservation-link.mi?id=16458128…> at our GCC2022 venue the Courtyard Minneapolis Downtown by Thursday, June 30 to get our conference rate of $139/night! Register for GCC2022 by June 22 <https://galaxyproject.org/events/gcc2022/register> Make Hotel Reservations by June 30 <https://www.marriott.com/event-reservations/reservation-link.mi?id=16458128…> PS: No, you can never completely leave the Galaxy. You knew this right? PPS: We moved these dates back because a particularly bad interaction between the (spiffy!) MailChimp service we have been using for GCC2022, and Galaxy's (only semi-functional!) MailMan3 server caused no email to be delivered to several mailing lists since the end of April. So, now is your chance. Please do register by Wednesday. -- My last day with Galaxy was December 17, 2021 . After that I will be the Anaconda <https://www.anaconda.com/> open source community manager. If you need to reach Galaxy Outreach after December 17, please send your email to outreach(a)galaxyproject.org.

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Why do my datasets keep showing gray?
by huanglin202104＠163.com 27 Dec '21

27 Dec '21

I have successfully uploaded RNA-seq fastq.gz using FTP. Then I back to Galaxy Server, hover to the left Tools panel and simply click on: Get Data → Upload File → Choose FTP File. I can see datasets that have been successfully uploaded, but they are always grayed in History. The state is waiting to be executed. It has been 20 hours. Is this normal?

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TOMORROW: Deadline to nominate a training topic for GCC2021
by Beatriz Serrano-Solano 28 Jan '21

28 Jan '21

Hi all, Tomorrow is the last day for the training topic nominations for GCC 2021. This means that you have the chance to decide which topics you would like to teach or learn during the GCC 2021 training sessions. You can do so by filling out this form <https://docs.google.com/forms/d/e/1FAIpQLSe-tfL-sD55RQcKU0W4wfglPbcpEZDbuwG…>. So far, the list of topics that have been nominated is here: https://galaxyproject.org/events/gcc2021/training/ <https://galaxyproject.org/events/gcc2021/training/>. Thank you! Bea on behalf of the GCC 2021 Organizing Committee -- Dr Beatriz Serrano-Solano (she/her) <https://www.hrc.org/resources/talking-about-pronouns-in-the-workplace> Bioinformatics Group Dept. Computer Science Albert-Ludwigs-Universität Freiburg Georges-Köhler-Allee, 106 79110 Freiburg Germany

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2nd Galaxy-ELIXIR webinar series - Please register
by Beatriz Serrano-Solano 15 Jan '21

15 Jan '21

Hi all, Next week on Wednesday starts the '*2nd Galaxy-ELIXIR webinar series: Open Data Infrastructures to tackle COVID-19 pandemic*'. For 6 weeks, several speakers from the worldwide Galaxy community will cover the recent developments in Galaxy highlighting the importance of open science and infrastructures. The first one, 'Lessons learned and introduction to the series', will be next Wednesday at *5 pm CET*, by Anton Nekrutenko and Marius van den Beek. If you are interested, *please register here*: https://elixir-europe.org/events/2nd-galaxy-elixir-webinar-series Hope to see many of you there! Cheers, Bea

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Invitation to join the Open Life Science Program
by Bérénice Batut 14 Nov '19

14 Nov '19

Dear members of the Galaxy community, Yo, Malvika and I are organizing the Open Life Science (https://openlifesci.org/ <https://openlifesci.org/>) program for mentoring and training early-stage researchers and potential academic leaders who want to become ambassadors for Life Science in their communities. The first cohort of this program will run from January to April 2020. Participants of this 15-week mentoring & training program will learn essential knowledge required to create, lead, and sustain an Open Science project, connect with members across different communities, backgrounds, and identities by sharing their experiences and expertise. The complete schedule and participation guidelines of the program are available at https://openlifesci.org/syllabus <https://openlifesci.org/syllabus>. This program gives a unique opportunity to develop an Open Science project that participants either already have been working on, or want to develop in the near future within life sciences. More information regarding the roles and benefits for our mentees <https://openlifesci.org/about#mentees> and eligibility of a proposed project <https://openlifesci.org/index#projects> can be found on our website. Applications can be submitted until 8 December 2019 (midnight in any part of the world) at https://easychair.org/cfp/ols-2020 <https://easychair.org/cfp/ols-2020>. To answer any questions related to this program, an online information session (webinar) will be held on 27 November 2019 at 16:00 GMT (Check your local time <https://arewemeetingyet.com/Berlin/2019-11-27/17:00/OpenLifeSci%20&%20eLife…>). Please find more details and sign up on this shared document <https://docs.google.com/document/d/1EIDzZi5mgRiWR7cJQl0up470C87GsbcoTR_6-cs…>. Please feel free to contact us for more information by emailing (hello(a)openlifesci.org <mailto:hello@openlifesci.org>) or connecting on Twitter @openlifesci <https://twitter.com/openlifesci>, and to forward this email to anyone who may be interested. Best regards, Bérénice, Malvika, Yo OpenLifeSci Organisers https://openlifesci.org <https://openlifesci.org/>

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"Galaxy and Training" paper
by Bérénice Batut 07 Oct '19

07 Oct '19

Hi all, We would like to write a paper "Galaxy and Training" about anything related to training in Galaxy (training material, workshops, GTN, etc). We are organizing a call to collect ideas and maybe create a group of people interested in working together on this paper. To find a slot fitting to the maximum of people, please fill the following doodle (covering October): doodle.com/poll/c4uvgzphnxwn9yeq <https://doodle.com/poll/c4uvgzphnxwn9yeq> For the ones who may not be able to join but still want to contribute, we will take notes and share any document related to this here, so you can still be involved. I may have forgotten people, so feel free to forward this email to anyone who may be interested. Best, Bérénice Bérénice Batut ----------------------------------------------------------------------------------- PhD in Bioinformatics and Computational Biology Post-doc in Bioinformatics ----------------------------------------------------------------------------------- http://bebatut.fr

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Galaxy Trainer
by saja al yaacoub 11 Sep '19

11 Sep '19

Hello, I am Saja EL Yaacoub and I am a Bioengineer, I am interested in learning your bioinformatics program and then becoming an official Galaxy Trainer in my country Lebanon specially that I found out that there is none. May you please inform me about the steps. Best Regards, Saja

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Galaxy Training Network day - (online) CoFest and community call - 12th of September
by Bérénice Batut 08 Aug '19

08 Aug '19

Dear all, The Galaxy Training Network is organizing every 3 months one day dedicated to the training community: collaborative work on the training content but also calls with the community. The next day will be on the 12th of September. Anyone who would like to contribute, learn how to contribute to the Galaxy Training Material or just catch up with the community is very welcome to join. During the day, we will have 2 GTN community calls to share news about Galaxy and Training, but also just talk together. To accommodate different time zones and schedules, there will be 2 calls (with similar discussions) at 8am (UTC + 2) <https://arewemeetingyet.com/Berlin/2019-09-12/08:00/GTN%20meeting> and 4pm (UTC + 2) <https://arewemeetingyet.com/Berlin/2019-09-12/16:00/GTN%20meeting> via Hangout <https://hangouts.google.com/hangouts/_/calendar/Z2FsYXh5dW5pZnJlaWJ1cmdAZ21…>. Outside of these calls, we will have a CoFest (Collaboration Fest). We will coordinate via Hangout <https://hangouts.google.com/hangouts/_/calendar/Z2FsYXh5dW5pZnJlaWJ1cmdAZ21…> (drop-in channel we will keep open the whole day) and the GTN Gitter channel <https://gitter.im/Galaxy-Training-Network/Lobby>. More details about this day can be found on the Galaxy website (https://galaxyproject.org/events/2019-09-gtn/ <https://galaxyproject.org/events/2019-09-gtn/>) and the dedicated GitHub issue <https://github.com/galaxyproject/training-material/issues/1491>. Please forward this email to any potentially interested individuals and groups. We hope to see you there, Best, Bérénice Bérénice Batut ----------------------------------------------------------------------------------- PhD in Bioinformatics and Computational Biology Post-doc in Bioinformatics ----------------------------------------------------------------------------------- http://bebatut.fr

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GCC2019 submission 43 update
by GCC2019 03 May '19

03 May '19

Dear authors, we acknowledge that we received new files for your GCC2019 submission. The information about this update is shown below. Number: 43 Authors: Bérénice Batut, Saskia Hiltemann, Helena Rasche, Timothy Griffin, Pratik Jagtap, Praveen Kumar, Subina Mehta, Galaxy Training Network, Björn Grüning and Dave Clements Title: Galaxy and Training: 2019 updates from the Galaxy Training Network Uploaded by: a conference chair Updates: abstract, version 2 (62094 bytes) To access the new version of your submission you should log in to the GCC2019 EasyChair page.

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