- Galaxy-training - lists.galaxyproject.org

Fwd: Highlights from GOBLET's Operational Board - August 2017
by Dave Clements 29 Aug '17

29 Aug '17

Hello all, Registration (which is free) is open for the 2017 GOBLET meeting. Dave C ---------- Forwarded message ---------- From: Teresa Attwood <teresa.k.attwood(a)manchester.ac.uk> Date: Wed, Aug 23, 2017 at 11:37 PM Subject: Highlights from GOBLET's Operational Board - August 2017 To: "all(a)mygoblet.org" <all(a)mygoblet.org> Cc: "info(a)mygoblet.org" <info(a)mygoblet.org>, Teresa Attwood < teresa.k.attwood(a)manchester.ac.uk> Dear All, Here is a brief update from the August meeting of GOBLET's Operational Board. Thanks to all for your continued support and feedback. GOBLET Exec ________________________________________ Highlights from GOBLET's Operational Board, August 2017 * Carlos, Tech Committee Chair, leaves GOBLET at the end of August - we warmly thank him for his work and support of GOBLET in recent years, and wish him well in his future life in Norway * Plans for the 2017 AGM satellite events are shaping up - agendas for the GOBLET/ ELIXIR e-learning and Train-the-Trainer events will be posted on the website soon * Registration for the 2017 AGM is now open. Please register at https://www.eventbrite.com/e/goblet-agm-2017-registration-35460348858 * If you’d like to get involved with GOBLET’s Committees, please don't hesitate to get in touch: info(a)mygoblet.org ________________________________________ -- https://galaxyproject.org/ https://usegalaxy.org/

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Fwd: Highlights from the GOBLET Executive desk - August 2017
by Dave Clements 16 Aug '17

16 Aug '17

Hi All, The latest from the GOBLET exec. Dave C ---------- Forwarded message ---------- From: Michelle Brazas <Michelle.Brazas(a)oicr.on.ca> Date: Sat, Aug 12, 2017 at 7:19 PM Subject: Highlights from the GOBLET Executive desk - August 2017 To: "all(a)mygoblet.org" <all(a)mygoblet.org> Here we continue with our August update, after learning that our new approach to communicating out Executive and Committee activities to the GOBLET community is being well received! Thank you for your feedback. GOBLET Executive *Highlights from the GOBLET Executive desk for August 2017* * GOBLET put forward a polished, professional look at ISMB/ECCB 2017 in Prague, with new banners and booth materials from the PR committee which drew in many new faces and inquiries. * GOBLET posters presented at ISMB/ECCB 2017 have been uploaded to F1000 for reference should you have not had the opportunity to visit us in Prague. * There are several vacancies in the various GOBLET committees, so please contact us if you would like to join a committee and participate in shaping its activities. * Talk to action: GOBLET’s AGM 2017 agenda will focus on maintaining currency and advancing our own trainer skill sets with hands-on sessions in both GitHub and Docker planned, as well as a workshop in Bioschemas. Links to the agenda have been posted on the GOBLET website under announcements and upcoming events. * Reminder to register to attend the AGM 2017 in Oeiras. -- *Michelle D. Brazas, Ph.D.* Senior Program Manager, Adaptive Oncology To learn about our Informatics services, click here <http://oicr.on.ca/collaborative-research-resources#hide2> *Ontario Institute for Cancer Research* MaRS Centre 661 University Avenue, Suite 510 Toronto, Ontario, Canada M5G 0A3 Tel: 416-673-8502 Cell: 416-357-6687 FAX: 416-977-7446 Toll-free: 1-866-678-6427 ext. 8502 Email: *michelle.brazas(a)oicr.on.ca* <*http://michelle.brazas@oicr.on.ca <http://michelle.brazas@oicr.on.ca/>*> www.oicr.on.ca -- https://galaxyproject.org/ https://getgalaxy.org/ https://usegalaxy.org/ https://gcc2017.sciencesconf.org/

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Fwd: FW: [ESCIENCE-LAB] Fwd: FOSTER - call for trainers to share their experiences in a book sprint
by Dave Clements 08 Aug '17

08 Aug '17

HI All, FYI. Dave C ---------- Forwarded message ---------- From: Teresa Attwood <teresa.k.attwood(a)manchester.ac.uk> Date: Tue, Aug 8, 2017 at 2:47 AM Subject: FW: [ESCIENCE-LAB] Fwd: FOSTER - call for trainers to share their experiences in a book sprint To: "all(a)mygoblet.org" <all(a)mygoblet.org> Cc: Teresa Attwood <teresa.k.attwood(a)manchester.ac.uk> Dear All, The following might be of interest to some members of the GOBLET community. Best wishes, Terri -------- Forwarded Message -------- From: Joy Davidson <joy.davidson(a)glasgow.ac.uk<mailto:joy.davidson@glasgow. ac.uk>> Subject: [rda-edu-ig] FOSTER - call for trainers to share their experiences in a book sprint Date: 2 August 2017 at 14:53:46 BST To: Education and Training on handling of research data IG < rda-edu-ig(a)rda-groups.org<mailto:rda-edu-ig@rda-groups.org>> Cc: "Brinken, Helene" <brinken(a)sub.uni-goettingen.de<mailto:brinken@sub.uni- goettingen.de>> Hi everyone, I wanted to share this pre-call for potential authors to a collaboratively author a handbook on Open Science training written by trainers for trainers. The call will go out more widely via the FOSTER website in September but I wanted to share it with members of this group in advance. The dates are still be finalised but it will likely take place the first or second week of February in Hanover, Germany. If you have any questions, please contact Helen Brinken (cc’d). All the best, Joy Call to Open Science trainers – share your experiences and help to write a book! Next February FOSTER will bring together Open Science trainers and educators to collaboratively author a training handbook. If you have practical experience in implementing Open Science training at your organisation we’d love to hear from you. What works, what doesn’t? How can you make the most of limited resources? With your help, we will create a handbook that equips future trainers with methods, instructions, exemplary training outlines and inspiration for their own Open Science trainings. The handbook will provide Open Science advocates across the globe with practical know-how to deliver Open Science principles to researchers and support staff. The handbook will be produced in a book sprint. You never have heard of that? This format will ensure a workshop environment in which a team of about 10 authors creates a finished book in four days collaboratively. Sounds crazy? Maybe, but let’s go for it! Join our writing adventure: Ten authors. Four days. One book. We are looking for people from diverse scientific backgrounds, with Open Science expertise (from general to discipline specific) and experience in developing and delivering Open Science training. So, if you would like to share your experiences and are motivated to be part of our team writing a handbook in just a few days, please apply using the form available at: https://goo.gl/forms/G6wwKMtKpuA00O9W2 < https://goo.gl/forms/G6wwKMtKpuA00O9W2> We will need information about your scientific background, your area of Open Science expertise, your training experience and of course your motivation to participate in our extraordinary writing adventure. The book sprint will take place in Germany. Your travel expenses will be co-funded by FOSTER. The call for expressions of interests will be open until Sunday, 1 October 2017. You will hear from us by late October 2017. Contact person If you have any questions or need clarifications, please contact Helene Brinken, University of Göttingen, State and University Library, brinken(a)sub.uni-goettingen.de<mailto:brinken@sub.uni-goettingen.de> <mailto: brinken(a)sub.uni-goettingen.de>. About FOSTER The EU-funded project FOSTER (Fostering the practical implementation of Open Science in Horizon 2020 and beyond) aims to support Open Science trainers in multiplying open access, open data sharing and open science principles. -- Full post: https://www.rd-alliance.org/group/education-and-training- handling-research-data-ig/post/foster-call-trainers-share-their < https://www.rd-alliance.org/group/education-and-training- handling-research-data-ig/post/foster-call-trainers-share-their> Manage my subscriptions: https://www.rd-alliance.org/mailinglist < https://www.rd-alliance.org/mailinglist> Stop emails for this post: https://www.rd-alliance.org/ mailinglist/unsubscribe/57226 <https://www.rd-alliance.org/ mailinglist/unsubscribe/57226> -- https://galaxyproject.org/ https://getgalaxy.org/ https://usegalaxy.org/ https://gcc2017.sciencesconf.org/

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Fwd: GOBLET Second Quarter Newsletter 2017
by Dave Clements 19 Jul '17

19 Jul '17

Hi All, The GOBLET newsletter is out, and it includes a writeup of the May training materials hackathon, s well as info about ISMB and the annual GOBLET meeting. Cheers, Dave C ---------- Forwarded message ---------- From: Ann Meyer <Ann.Meyer(a)oicr.on.ca> Date: Wed, Jul 19, 2017 at 11:35 AM Subject: GOBLET Second Quarter Newsletter 2017 To: "all(a)mygoblet.org" <all(a)mygoblet.org> Hello everyone, The Outreach & PR committee is proud to announce that the second GOBLET Newsletter for 2017 is out! A copy is attached to this email and it is available http://www.mygoblet.org/announcements/second-goblet- newsletter-2017. Please distribute the newsletter within your own channels. If you have any news items you would like featured in the next newsletter, please send an email to pr(a)mygoblet.org. >From your GOBLET Outreach and PR Committee. -- *Ann Meyer, PhD *Manager, Knowledge and Research Exchange *Ontario Institute for Cancer Research* MaRS Centre 661 University Avenue Suite 510 Toronto, Ontario Canada M5G 0A3 Email: Ann.Meyer(a)oicr.on.ca Phone: 647-260-7925 Cell: 647-295-2612 Toll-free: 1-866-678-6427 Twitter: @OICR_news www.oicr.on.ca This message and any attachments may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this message in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this message may not be that of the organization. -- https://galaxyproject.org/ https://getgalaxy.org/ https://usegalaxy.org/ https://gcc2017.sciencesconf.org/

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Fwd: Highlights from the GOBLET Executive desk - July 2017
by Dave Clements 12 Jul '17

12 Jul '17

Hello all, The latest from GOBLET. Dave C ---------- Forwarded message ---------- From: Michelle Brazas <Michelle.Brazas(a)oicr.on.ca> Date: Wed, Jul 12, 2017 at 8:01 AM Subject: Highlights from the GOBLET Executive desk - July 2017 To: "all(a)mygoblet.org" <all(a)mygoblet.org> We are trying out some new communication mechanisms, to keep you informed on what the GOBLET Executive and Committees are up to each month. GOBLET Executive *Highlights from the GOBLET Executive desk for July 2017* * GOBLET plans for ISMB/ECCB 2017 are taking shape. GOBLET will be in Prague with a booth, new updated banners, other advertising materials and two posters, so please come visit us. * The GOBLET AGM 2017 registration pages have been posted to the GOBLET website under announcements and upcoming events. Register to attend the AGM in Oeiras. * Individual and organizational members should be receiving their membership renewal notifications from Celia. * GOBLET has received a donation from EMBnet. The donation will be used to fund development of branded training materials beginning August 1, 2017. -- *Michelle D. Brazas, Ph.D.* Senior Program Manager, Adaptive Oncology To learn about our Informatics services, click here <http://oicr.on.ca/collaborative-research-resources#hide2> *Ontario Institute for Cancer Research* MaRS Centre 661 University Avenue, Suite 510 Toronto, Ontario, Canada M5G 0A3 Tel: 416-673-8502 Cell: 416-357-6687 FAX: 416-977-7446 Toll-free: 1-866-678-6427 ext. 8502 Email: *michelle.brazas(a)oicr.on.ca* <*http://michelle.brazas@oicr.on.ca <http://michelle.brazas@oicr.on.ca/>*> www.oicr.on.ca -- https://galaxyproject.org/ https://getgalaxy.org/ https://usegalaxy.org/ https://gcc2017.sciencesconf.org/

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Re: [gxy-train] a Birds-of-a-Feather meeting for the Computational Biology Education (CoBE) Community at ISMB Prague
by Doyle Maria 07 Jun '17

07 Jun '17

Hi Dave, Hans-Rudolf, all, I don't know if these are GTN needs or just mine :) but aswell as what Dave put, what about... For the Galaxy training material that's being developed it would be great to have as many bioinformatics trainers as possible be aware that it exists and also try it out and give feedback on how they find it. How to best link in with other bioinformatics groups/networks/trainers for awareness of what each other are doing, sharing learnings/resources, collaborating on things of common interest etc. As I think the Galaxy Training Network Github is a great idea, and for trainers like me who also teach other bioinformatics software it could be great if there were also centralized Githubs/communities for collaborative development of high-quality bioinformatics training for R, Python, Command Line, HPC etc (they could maybe even use the same datasets where appropriate). Cheers, Maria Maria Doyle Application and Training Specialist Research Computing Facility [http://i.imgur.com/tG0nMXg.jpg] From: Galaxy-training <galaxy-training-bounces(a)lists.galaxyproject.org<mailto:galaxy-training-bounces@lists.galaxyproject.org>> on behalf of Dave Clements <clements(a)galaxyproject.org<mailto:clements@galaxyproject.org>> Date: Wednesday, 7 June 2017 at 5:50 AM To: Hans-Rudolf Hotz <hrh(a)fmi.ch<mailto:hrh@fmi.ch>> Cc: Galaxy-Training List <galaxy-training(a)lists.galaxyproject.org<mailto:galaxy-training@lists.galaxyproject.org>> Subject: [SPAM][M] Re: [gxy-train] a Birds-of-a-Feather meeting for the Computational Biology Education (CoBE) Community at ISMB Prague Hi Hans-Rudolf, all Most likely, you are already aware of this...... I wasn't aware of any of this! Thanks for posting the links. The "Computational Biology Education (CoBE) Community" - a Community of Special Interest at the ISMB/ECCB conference - is organizing a Birds-of-a-Feather meeting: http://tinyurl.com/ybl6jfxn This is in addition to the workshop (https://www.iscb.org/cms_addon/conferences/ismbeccb2017/workshops.php#WK01) they are organizing already Should GTN be present at this BoF? I think so. That BoF is during BOSC, which is unfortunate, and which may mean that no one will actually be able to attend (see https://galaxyproject.org/events/2017-ismb-bosc/ for Galaxy-related content I know about). Does anyone think they would be able to attend this BoF? The post says: Even if you are unable to attend the BoF, we welcome your input. So I think we should at least do that, even, if we don't have anyone who can make it. The posts asks for: please provide 2 to 3 bullet points identifying the educational goals and needs of your community. Here's a start Galaxy Training Network - Goals: Scale bioinformatics and Galaxy training; - make it easy to find trainers, training events, and training materials - make it easy to collaboratively create, maintain, and share training materials - Needs: How to make this happen, when very few of us are full-time trainers Thoughts? (And I think that needs statement is weak.) Thanks, Dave C Regards, Hans-Rudolf -- Hans-Rudolf Hotz, PhD Bioinformatics Support Friedrich Miescher Institute for Biomedical Research Maulbeerstrasse 66 4058 Basel/Switzerland -- https://galaxyproject.org/ https://getgalaxy.org/ https://usegalaxy.org/ https://gcc2017.sciencesconf.org/ This email (including any attachments or links) may contain confidential and/or legally privileged information and is intended only to be read or used by the addressee. If you are not the intended addressee, any use, distribution, disclosure or copying of this email is strictly prohibited. Confidentiality and legal privilege attached to this email (including any attachments) are not waived or lost by reason of its mistaken delivery to you. If you have received this email in error, please delete it and notify us immediately by telephone or email. Peter MacCallum Cancer Centre provides no guarantee that this transmission is free of virus or that it has not been intercepted or altered and will not be liable for any delay in its receipt.

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a Birds-of-a-Feather meeting for the Computational Biology Education (CoBE) Community at ISMB Prague
by Hans-Rudolf Hotz 06 Jun '17

06 Jun '17

Hi all Most likely, you are already aware of this...... The "Computational Biology Education (CoBE) Community" - a Community of Special Interest at the ISMB/ECCB conference - is organizing a Birds-of-a-Feather meeting: http://tinyurl.com/ybl6jfxn This is in addition to the workshop (https://www.iscb.org/cms_addon/conferences/ismbeccb2017/workshops.php#WK01) they are organizing already Should GTN be present at this BoF? Regards, Hans-Rudolf -- Hans-Rudolf Hotz, PhD Bioinformatics Support Friedrich Miescher Institute for Biomedical Research Maulbeerstrasse 66 4058 Basel/Switzerland

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Fwd: [BBC] ELIXIR/GOBLET/GTN hackathon for Galaxy training material re-use
by Dave Clements 22 Mar '17

22 Mar '17

Hello all, The announcement below is perhaps the most relevant announcement I've ever sent to this list. :-) I'm planning on being there, and it would be great to have you there as well. Applications are due 31 March. See you in Cambridge, Dave C ---------- Forwarded message ---------- From: Frederik Coppens <frcop(a)psb.vib-ugent.be> Date: Tue, Mar 21, 2017 at 1:28 AM Subject: [BBC] ELIXIR/GOBLET/GTN hackathon for Galaxy training material re-use To: bbclist(a)psb.vib-ugent.be Dear all we are organizing an ELIXIR/GOBLET/GTN hackathon for Galaxy training material re-use, aiming to extend and improve the content of the Galaxy Training material repo (https://github.com/galaxy-project/training-material <https://github.com/bgruening/training-material>). You can find more details here <https://docs.google.com/document/d/1dLCL5-2pkWTvmGTz7GyQkb5LEIZ3FBkPvCBoqUP…> . This workshop will take place in Cambridge, UK from 22nd to 24th of May in the framework of ELIXIR-EXCELERATE. If you have experience and interest in improving, streamlining, sharing of training performed using Galaxy, consider to join ! To ensure the hackathon is relevant for all participants, there is a selection procedure. *Details how to apply are here <https://docs.google.com/document/d/1dLCL5-2pkWTvmGTz7GyQkb5LEIZ3FBkPvCBoqUP…>, please do so before March 31st !* We will get back to you asap. cheers the organizing committee *Frederik Coppens* - Project leader & IT manager Applied Bioinformatics And Biostatistics I.T. Support *VIB-UGent Center for Plant Systems Biology* Ghent University Technologiepark 927 - 9052 Ghent - Belgium Tel. +32(0)9 331 38 12 www.psb.ugent.be _______________________________________________ BBClist mailing list BBClist(a)psb.ugent.be https://maillist.psb.ugent.be/mailman/listinfo/bbclist -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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GOBLET First Quarter Newsletter 2017
by Doyle Maria 07 Mar '17

07 Mar '17

Hello all, Just to let you know the first GOBLET newsletter of 2017 is out now. It’s attached here as a pdf and can also found at the link below. Cheers, Maria Maria Doyle Application and Training Specialist Research Computing Facility [http://i.imgur.com/tG0nMXg.jpg] From: Ann Meyer <Ann.Meyer(a)oicr.on.ca<mailto:Ann.Meyer@oicr.on.ca>> Date: Tuesday, 7 March 2017 at 3:58 AM To: "all(a)mygoblet.org<mailto:all@mygoblet.org>" <all(a)mygoblet.org<mailto:all@mygoblet.org>> Subject: GOBLET First Quarter Newsletter 2017 Hello everyone, The Outreach & PR committee is proud to announce that the first GOBLET Newsletter for 2017 is out! A copy is attached to this email and it is available at http://mygoblet.org/announcements/goblet-newsletter-0. Please distribute the newsletter within your own channels. If you have any news items you would like featured in the next newsletter, please send an email to pr(a)mygoblet.org<mailto:pr@mygoblet.org>. >From your GOBLET PR and Outreach Committee. -- Ann Meyer, PhD Manager, Knowledge and Research Exchange Ontario Institute for Cancer Research MaRS Centre 661 University Avenue Suite 510 Toronto, Ontario Canada M5G 0A3 Email: Ann.Meyer(a)oicr.on.ca<mailto:Ann.Meyer@oicr.on.ca> Phone: 647-260-7925 Cell: 647-295-2612 Toll-free: 1-866-678-6427 Twitter: @OICR_news www.oicr.on.ca<%22http://> This message and any attachments may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this message in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this message may not be that of the organization. This email (including any attachments or links) may contain confidential and/or legally privileged information and is intended only to be read or used by the addressee. If you are not the intended addressee, any use, distribution, disclosure or copying of this email is strictly prohibited. Confidentiality and legal privilege attached to this email (including any attachments) are not waived or lost by reason of its mistaken delivery to you. If you have received this email in error, please delete it and notify us immediately by telephone or email. Peter MacCallum Cancer Centre provides no guarantee that this transmission is free of virus or that it has not been intercepted or altered and will not be liable for any delay in its receipt.

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Urgent: GCC - GTN presentations and workshop
by Björn Grüning 24 Jan '17

24 Jan '17

Hi GTN! Today is the deadline to hand-in workshop proposals. Sorry for the late notice. We were thinking of handing in a session about: * GTN github repo + template * Galaxy tours * Best-practices * Some kind of train the trainer * Galaxy-Hub ? A mixture or only parts of it, not sure. Do you think we should do this? Other ideas? What about a Galaxy GTN talk? Please let me know what you think, Bjoern

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