Hi all,
We are starting a series of regular online CoFests, every 3 months on the 3rd Friday, for a day of the collaborative work on the training material.
The first one will be on the 17th of August. We plan to focus on metagenomics training; but anyone who would like to contribute on any other topics is very welcome to join.
We will coordinate via the GTN Gitter channel <https://gitter.im/Galaxy-Training-Network/Lobby> and GitHub issues.
Saskia and me will be online between 9am and 6pm (CEST) but people from other time zones should feel welcome to continue even before/after. We will keep an eye on Gitter and GitHub
If you want to join to help or to talk and learn about the project, let us know on the Gitter channel or on the dedicated GitHub issue <https://github.com/galaxyproject/training-material/issues/939>.
Best,
Bérénice Batut
-----------------------------------------------------------------------------
PhD in Bioinformatics and Computational Biology
Post-doctoral researcher in Bioinformatics
-----------------------------------------------------------------------------
http://bebatut.fr <http://bebatut.fr/>
Hi all,
Over lunch of the 28th June 2018 (during GCC/BOSC), we organized a BoF (Birds of Feather) with around 20 persons. We covered quite a lot of ground over some main topics: Content, Infrastructure, Contribution, Feedback, Mentoring of trainers.
Simon Gladman took notes: https://github.com/galaxyproject/training-material/issues/941 <https://github.com/galaxyproject/training-material/issues/941> (Thanks to him!)
We would be happy to have your feedbacks on these discussions.
Best,
Bérénice Batut
-----------------------------------------------------------------------------
PhD in Bioinformatics and Computational Biology
Post-doctoral researcher in Bioinformatics
-----------------------------------------------------------------------------
http://bebatut.fr <http://bebatut.fr/>
Hi All,
FYI.
Dave C
---------- Forwarded message ----------
From: Teresa Attwood <teresa.k.attwood(a)manchester.ac.uk>
Date: Tue, Jan 16, 2018 at 1:21 AM
Subject: Call for Education-Themed Papers and Abstracts for ISMB 2018
To: "all(a)mygoblet.org" <all(a)mygoblet.org>
Cc: Teresa Attwood <teresa.k.attwood(a)manchester.ac.uk>
Call for
Education Papers/Abstracts
Intelligent Systems for
Molecular Biology (ISMB) 2018
July 8, 2018
Chicago, IL U.S.A.
We are soliciting submissions for a full-day Education session as part of
the program of Intelligent Systems for Molecular Biology (ISMB) 2018, to be
held July 6-10, 2018 at the Hyatt Regency Hotel, Chicago, IL. Deadline for
Proceedings Submission is January 29th. Deadline for Abstract Submissions
is April 5th. This is the first time ISMB is specifically soliciting
contributed work in the area of computational biology education. Accepted
work will appear as part of a one-day track at the ISMB meeting, run under
the auspices of the ISMB Education Community of Special Interest (COSI), in
parallel with other COSI tracks. The Education track will be open to all
ISMB attendees and run on a parallel schedule to other ISMB tracks.
Contributions are solicited for proceedings papers with associated platform
talks as well as short abstracts for consideration for talks or posters.
These will appear in addition to invited talks on topics of community
interest.
Proceedings papers should be submitted through the general ISMB proceedings
submission system. See the following for formatting requirements and
submission instructions:
https://www.iscb.org/ismb2018-submit/proceedings
Manuscripts on bioinformatics education should be designated as part of the
Bioinformatics Education area during the submission process. Proceedings
submissions will be considered alongside other ISMB proceedings paper
submissions. Accepted papers will appear in the ISMB Proceedings special
issue of Bioinformatics.
Short abstracts (one-page maximum) will be considered separately for
platform talks and/or posters. Details on abstract submission will be
forthcoming.
Papers and abstracts are solicited in all areas of bioinformatics education
and training. Topics of interest include, but are not limited to, the
following:
* Curricular development and guidelines
* Education policy
* Case studies in bioinformatics education
* Pedagogical techniques or experiences
* Educational assessment
* Outreach and diversity efforts
* Training of experimental biologists, computational biologists,
healthcare professionals, or other communities
* Education at the K-12, undergraduate, graduate, or post-graduate level
* Training in academia or industry
Invited Speakers
* TBA
Organizing Committee
* Teresa Attwood (University of Manchester)
* Fran Lewitter (Whitehead Institute (ret.))
* Ann Meyer (Ontario Institute for Cancer Research)
* Sarah Morgan (European Bioinformatics Institute)
* Nicola Mulder (University of Cape Town)
* Patricia Palagi (Swiss Institute of Bioinformatics)
* Russell Schwartz (Carnegie Mellon University)
* Lonnie Welch (Ohio University)
Key Dates
Proceedings
* Monday January 29, 2018: Deadline for Proceedings Submission
* Wednesday February 28, 2018: Conditional Acceptance Notification for
Proceedings
* Thursday March 22, 2018: Deadline for Revisions of Proceedings Papers
* Monday April 2, 2018: Final Acceptance Notification for Proceedings
Abstracts
* Thursday Feb 21, 2018: Abstract Submission Opens
* Thursday April 5, 2018: Deadline for Abstract Submissions
* Thursday April 26, 2018: Acceptance Notification for Talk and Poster
Abstracts
* Friday April 6, 2018: Late Poster Submission Opens
* Tuesday May 1, 2018: Late Poster Submission Deadline
* Friday May 18, 2018: Acceptance Notification for Late Posters
Meeting Registration
* Thursday March 15, 2018: Meeting Registration Opens
* Thursday June 7, 2018: Early Registration Deadline
* Thursday June 21, 2018: Online Registration Closes
* Thursday July 5, 2018: Onsite Registration Opens
* Friday July 6-Tuesday July 10, 2018: ISMB Conference
* Sunday July 8, 2018: Education Track Sessions
--
https://galaxyproject.org/https://usegalaxy.org/
Hi All,
Annette McGrath has agreed to represent GTN at this year's GOBLET meeting.
Annette is with CSIRO's Data61 initiative, is on the GOBLET executive board
is a longtime Galaxy trainer and member of the community.
I've opened a discussion on the GTN Gitter channel
<https://gitter.im/Galaxy-Training-Network/Lobby> asking what we, GTN,
would like to have discussed at this year's meeting (22-24 Nov). I
encourage you to contribute to that discussion. If you'd rather contribute
via this email list then do that. I'll combine the two sources into a
coherent whole.
Thanks,
Dave C
--
https://galaxyproject.org/https://usegalaxy.org/
---------- Forwarded message ----------
From: Michelle Brazas <Michelle.Brazas(a)oicr.on.ca>
Date: Sun, Sep 17, 2017 at 2:20 PM
Subject: Highlights from the GOBLET Executive desk - September 2017
To: "all(a)mygoblet.org" <all(a)mygoblet.org>
Hope everyone has had a good start to a new semester!
Here we continue with our September update from the GOBLET Executive
Committee.
—
GOBLET Exec
*Highlights from the GOBLET Executive desk for September 2017*
- GOBLET welcomes and thanks all returning members and organizations,
and extends a warm welcome to our newest member this month: OMICtools
- Executive have been engaged lately with outreach conversations with
several new potential members in USA, Australia and UK. Keep spreading the
word about GOBLET!
- As some Operational Committee Chairs have moved on, GOBLET will seek
nominations for new Chairs prior to the AGM. Please contact the Exec (
info(a)mygoblet.org) if you would like more information on becoming a
Chair.
- The AGM agenda this year will bring focus back to ensuring our own
skills as trainers stays current. There will be sessions on GitHub setup
and Docker packaging, as well as a Bioschemas workshop. See here for
agenda: http://www.mygoblet.org/about-us/goblet-events/
goblet-agm-2017-oeiras
- Registration is still open to attend the AGM 2017 in Oeiras. Hotel
reservations must be completed by October 15, 2017. Link to registration:
https://www.eventbrite.com/e/goblet-agm-2017-registration-35460348858
<https://www.eventbrite.com/e/goblet-agm-2017-registration-35460348858>
--
*Michelle D. Brazas, Ph.D.*
Senior Program Manager, Adaptive Oncology
To learn about our Informatics services, click here
<http://oicr.on.ca/collaborative-research-resources#hide2>
*Ontario Institute for Cancer Research*
MaRS Centre
661 University Avenue, Suite 510
<https://maps.google.com/?q=661+University+Avenue,+Suite+510+%0D+Toronto,+On…>
Toronto, Ontario, Canada M5G 0A3
Tel: 416-673-8502
Cell: 416-357-6687
FAX: 416-977-7446
Toll-free: 1-866-678-6427 ext. 8502
Email: *michelle.brazas(a)oicr.on.ca* <*http://michelle.brazas@oicr.on.ca
<http://michelle.brazas@oicr.on.ca/>*>
www.oicr.on.ca
--
https://galaxyproject.org/https://usegalaxy.org/
---------- Forwarded message ----------
From: Teresa Attwood <teresa.k.attwood(a)manchester.ac.uk>
Date: Wed, Sep 13, 2017 at 5:56 AM
Subject: GOBLET 2017 AGM
To: "all(a)mygoblet.org" <all(a)mygoblet.org>
Cc: Teresa Attwood <teresa.k.attwood(a)manchester.ac.uk>
Dear All,
For those of you who're planning to attend GOBLET's 2017 AGM, this is to
let you know that
registration for the event is still open.
Information about accommodation can be reached via
http://gtpb.igc.gulbenkian.pt/GOBLET2017/
This includes a section, 'How to attend':
1. Please fill-in the REGISTRATION FORM.
2. Book your stay at Hotel Solar Pameiras by e-mail, stating that you are
attending GOBLET2017
to get our discounted rate (Eur 60.00 per night) Mailto: Reservas Solar
Palmeiras
3. Check this wesite regularly for News and other updates
If you visit the website and follow those instructions, the reservation
process with the designated
hotel should be straightforward (but please let us know if you encounter
any problems) The hotel
is block-booked at a discounted rate of €60 per night (as per the above)
until mid October, so we'd
encourage you to register and reserve your accommodation soon.
Further details are available here: http://www.mygoblet.org/about-
us/goblet-events/goblet-agm-2017-oeiras
We look forward to seeing you in Oeiras!
Best wishes,
Terri
On behalf of the GOBLET Exec
--
https://galaxyproject.org/https://usegalaxy.org/