- Galaxy-training - lists.galaxyproject.org

Why do my datasets keep showing gray?
by huanglin202104＠163.com 27 Dec '21

27 Dec '21

I have successfully uploaded RNA-seq fastq.gz using FTP. Then I back to Galaxy Server, hover to the left Tools panel and simply click on: Get Data → Upload File → Choose FTP File. I can see datasets that have been successfully uploaded, but they are always grayed in History. The state is waiting to be executed. It has been 20 hours. Is this normal?

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TOMORROW: Deadline to nominate a training topic for GCC2021
by Beatriz Serrano-Solano 28 Jan '21

28 Jan '21

Hi all, Tomorrow is the last day for the training topic nominations for GCC 2021. This means that you have the chance to decide which topics you would like to teach or learn during the GCC 2021 training sessions. You can do so by filling out this form <https://docs.google.com/forms/d/e/1FAIpQLSe-tfL-sD55RQcKU0W4wfglPbcpEZDbuwG…>. So far, the list of topics that have been nominated is here: https://galaxyproject.org/events/gcc2021/training/ <https://galaxyproject.org/events/gcc2021/training/>. Thank you! Bea on behalf of the GCC 2021 Organizing Committee -- Dr Beatriz Serrano-Solano (she/her) <https://www.hrc.org/resources/talking-about-pronouns-in-the-workplace> Bioinformatics Group Dept. Computer Science Albert-Ludwigs-Universität Freiburg Georges-Köhler-Allee, 106 79110 Freiburg Germany

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2nd Galaxy-ELIXIR webinar series - Please register
by Beatriz Serrano-Solano 15 Jan '21

15 Jan '21

Hi all, Next week on Wednesday starts the '*2nd Galaxy-ELIXIR webinar series: Open Data Infrastructures to tackle COVID-19 pandemic*'. For 6 weeks, several speakers from the worldwide Galaxy community will cover the recent developments in Galaxy highlighting the importance of open science and infrastructures. The first one, 'Lessons learned and introduction to the series', will be next Wednesday at *5 pm CET*, by Anton Nekrutenko and Marius van den Beek. If you are interested, *please register here*: https://elixir-europe.org/events/2nd-galaxy-elixir-webinar-series Hope to see many of you there! Cheers, Bea

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Invitation to join the Open Life Science Program
by Bérénice Batut 14 Nov '19

14 Nov '19

Dear members of the Galaxy community, Yo, Malvika and I are organizing the Open Life Science (https://openlifesci.org/ <https://openlifesci.org/>) program for mentoring and training early-stage researchers and potential academic leaders who want to become ambassadors for Life Science in their communities. The first cohort of this program will run from January to April 2020. Participants of this 15-week mentoring & training program will learn essential knowledge required to create, lead, and sustain an Open Science project, connect with members across different communities, backgrounds, and identities by sharing their experiences and expertise. The complete schedule and participation guidelines of the program are available at https://openlifesci.org/syllabus <https://openlifesci.org/syllabus>. This program gives a unique opportunity to develop an Open Science project that participants either already have been working on, or want to develop in the near future within life sciences. More information regarding the roles and benefits for our mentees <https://openlifesci.org/about#mentees> and eligibility of a proposed project <https://openlifesci.org/index#projects> can be found on our website. Applications can be submitted until 8 December 2019 (midnight in any part of the world) at https://easychair.org/cfp/ols-2020 <https://easychair.org/cfp/ols-2020>. To answer any questions related to this program, an online information session (webinar) will be held on 27 November 2019 at 16:00 GMT (Check your local time <https://arewemeetingyet.com/Berlin/2019-11-27/17:00/OpenLifeSci%20&%20eLife…>). Please find more details and sign up on this shared document <https://docs.google.com/document/d/1EIDzZi5mgRiWR7cJQl0up470C87GsbcoTR_6-cs…>. Please feel free to contact us for more information by emailing (hello(a)openlifesci.org <mailto:hello@openlifesci.org>) or connecting on Twitter @openlifesci <https://twitter.com/openlifesci>, and to forward this email to anyone who may be interested. Best regards, Bérénice, Malvika, Yo OpenLifeSci Organisers https://openlifesci.org <https://openlifesci.org/>

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"Galaxy and Training" paper
by Bérénice Batut 07 Oct '19

07 Oct '19

Hi all, We would like to write a paper "Galaxy and Training" about anything related to training in Galaxy (training material, workshops, GTN, etc). We are organizing a call to collect ideas and maybe create a group of people interested in working together on this paper. To find a slot fitting to the maximum of people, please fill the following doodle (covering October): doodle.com/poll/c4uvgzphnxwn9yeq <https://doodle.com/poll/c4uvgzphnxwn9yeq> For the ones who may not be able to join but still want to contribute, we will take notes and share any document related to this here, so you can still be involved. I may have forgotten people, so feel free to forward this email to anyone who may be interested. Best, Bérénice Bérénice Batut ----------------------------------------------------------------------------------- PhD in Bioinformatics and Computational Biology Post-doc in Bioinformatics ----------------------------------------------------------------------------------- http://bebatut.fr

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Galaxy Trainer
by saja al yaacoub 11 Sep '19

11 Sep '19

Hello, I am Saja EL Yaacoub and I am a Bioengineer, I am interested in learning your bioinformatics program and then becoming an official Galaxy Trainer in my country Lebanon specially that I found out that there is none. May you please inform me about the steps. Best Regards, Saja

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Galaxy Training Network day - (online) CoFest and community call - 12th of September
by Bérénice Batut 08 Aug '19

08 Aug '19

Dear all, The Galaxy Training Network is organizing every 3 months one day dedicated to the training community: collaborative work on the training content but also calls with the community. The next day will be on the 12th of September. Anyone who would like to contribute, learn how to contribute to the Galaxy Training Material or just catch up with the community is very welcome to join. During the day, we will have 2 GTN community calls to share news about Galaxy and Training, but also just talk together. To accommodate different time zones and schedules, there will be 2 calls (with similar discussions) at 8am (UTC + 2) <https://arewemeetingyet.com/Berlin/2019-09-12/08:00/GTN%20meeting> and 4pm (UTC + 2) <https://arewemeetingyet.com/Berlin/2019-09-12/16:00/GTN%20meeting> via Hangout <https://hangouts.google.com/hangouts/_/calendar/Z2FsYXh5dW5pZnJlaWJ1cmdAZ21…>. Outside of these calls, we will have a CoFest (Collaboration Fest). We will coordinate via Hangout <https://hangouts.google.com/hangouts/_/calendar/Z2FsYXh5dW5pZnJlaWJ1cmdAZ21…> (drop-in channel we will keep open the whole day) and the GTN Gitter channel <https://gitter.im/Galaxy-Training-Network/Lobby>. More details about this day can be found on the Galaxy website (https://galaxyproject.org/events/2019-09-gtn/ <https://galaxyproject.org/events/2019-09-gtn/>) and the dedicated GitHub issue <https://github.com/galaxyproject/training-material/issues/1491>. Please forward this email to any potentially interested individuals and groups. We hope to see you there, Best, Bérénice Bérénice Batut ----------------------------------------------------------------------------------- PhD in Bioinformatics and Computational Biology Post-doc in Bioinformatics ----------------------------------------------------------------------------------- http://bebatut.fr

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GCC2019 submission 43 update
by GCC2019 03 May '19

03 May '19

Dear authors, we acknowledge that we received new files for your GCC2019 submission. The information about this update is shown below. Number: 43 Authors: Bérénice Batut, Saskia Hiltemann, Helena Rasche, Timothy Griffin, Pratik Jagtap, Praveen Kumar, Subina Mehta, Galaxy Training Network, Björn Grüning and Dave Clements Title: Galaxy and Training: 2019 updates from the Galaxy Training Network Uploaded by: a conference chair Updates: abstract, version 2 (62094 bytes) To access the new version of your submission you should log in to the GCC2019 EasyChair page.

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GTN (online) CoFest and community call - 16th of May
by Bérénice Batut 16 Apr '19

16 Apr '19

Dear all, The Galaxy Training Network is organizing online CoFests (Collaboration/Contribution Fests) every 3 months for a day of the collaborative work on the training content. The next one will be on the 16th of May. Anyone who would like to contribute on any other topics is very welcome to join. We will coordinate via Hangout <https://hangouts.google.com/hangouts/_/calendar/Z2FsYXh5dW5pZnJlaWJ1cmdAZ21…> (drop-in channel we will keep open the whole day) and the GTN Gitter channel <https://gitter.im/Galaxy-Training-Network/Lobby>. During the day, we plan to have GTN community calls to discuss the recent changes and future directions. To accommodate different time zones and schedules, we will have 2 calls (with similar discussions) at 8am (UTC + 2) <http://arewemeetingyet.com/Berlin/2019-05-16/08:00/GTN%20meeting> and 4pm (UTC + 2) <http://arewemeetingyet.com/Berlin/2019-05-16/16:00/GTN%20meeting> via Hangout <https://hangouts.google.com/hangouts/_/calendar/Z2FsYXh5dW5pZnJlaWJ1cmdAZ21…>. More details about this day can be found on the Galaxy website (https://galaxyproject.org/events/2019-05-gtn/ <https://galaxyproject.org/events/2019-05-gtn/>) and the dedicated GitHub issue <https://github.com/galaxyproject/training-material/issues/1339>. Please forward this email to any potentially interested individuals and groups. We hope to see you there, Best, Bérénice Bérénice Batut ----------------------------------------------------------------------------------- PhD in Bioinformatics and Computational Biology Post-doc in Bioinformatics ----------------------------------------------------------------------------------- http://bebatut.fr

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[Galaxy Community Conference] Vote for Training
by Bérénice Batut 28 Jan '19

28 Jan '19

Hi all, We are proud to announce that the Galaxy Community Conference (GCC) <https://galaxyproject.org/events/gcc2019> 2019 will be held in Freiburg <https://www.freiburg.de/> (Germany) in the Konzerthaus <https://www.konzerthaus.freiburg.de/startseite/7/de/home.html> from 1.-6. July 2019. It will start with training but also continues with training throughout the conference. The community proposed some topics but as we try to reach this year a lot more users, we are really interested it what you would like to learn. Please take a few minutes to vote which training should be offered at GCC2019: https://goo.gl/forms/iaY5AezdFpyJ0ETh2 <https://galaxyproject.org/events/gcc2019/training/> Thank you very much :-) Best, Bérénice, in behalf of the GCC organization committee PS: Feel free to forward this email to anyone who may be interested. Thanks! Bérénice Batut ----------------------------------------------------------------------------------- PhD in Bioinformatics and Computational Biology Post-doc in Bioinformatics ----------------------------------------------------------------------------------- http://bebatut.fr

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