Galaxy-training

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87 discussions

Re: [gxy-train] [BBC] Online Galaxy training material hackathon
by Dave Clements 06 Oct '16

06 Oct '16

Hi All, In case you haven't seen this through other channels this starts on Thursday morning, wherever you are. Thanks, Dave C On Tue, Oct 4, 2016 at 4:03 AM, Frederik Coppens <frcop(a)psb.vib-ugent.be> wrote: > Hi all > > I would like to bring this hackathon to your attention: > https://www.elixir-europe.org/events/galaxy-training-material-hackathon It’s > an online contribution fest organized by the Galaxy Training Network, > October 6-7. > > This stems from an idea at GCC2016 to centralize Galaxy training material > on github. Bjoern Gruening already collected a lot of material (checkout > https://github.com/bgruening/training-material) and we’d like to further > grow this resource and make it more uniform. > > You can (optionally) indicate your interest here: https://github.com/ > bgruening/training-material/issues/58 > > You can find a list of topics here: https://github.com/ > bgruening/training-material/issues > > Everybody’s welcome to join, you really don’t need programming skills to > contribute. If the hackathon doesn’t fit your schedule (it’s a bit short > notice, I realise), you can always contribute at a later point, as > everything is available on github. > > cheers > > Frederik > > ================================================================== > Frederik Coppens, Ph.D. > Project Leader Applied Bioinformatics & Biostatistics > IT manager > > Tel: 32 (0)9 3313812 Fax:32 (0)9 3313809 > VIB DEPARTMENT OF PLANT SYSTEMS BIOLOGY, UGent > Technologiepark 927, 9052 Gent, BELGIUM > > frcop(a)psb.ugent.be http://www.psb.ugent.be/abb > ================================================================== > > > _______________________________________________ > BBClist mailing list > BBClist(a)psb.ugent.be > https://maillist.psb.ugent.be/mailman/listinfo/bbclist > > -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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Fwd: September Carpentries Newsletter
by Dave Clements 29 Sep '16

29 Sep '16

Hello all, The Software and Data Carpentry communities have a new low-volume mailing list <http://software-carpentry.us14.list-manage.com/subscribe?u=46d7513c798c6bd4…> for announcements and news. See below for the first edition. Thanks, Dave C ---------- Forwarded message ---------- From: Software and Data Carpentry <jduckles(a)software-carpentry.org> Date: Wed, Sep 28, 2016 at 6:50 AM Subject: September Carpentries Newsletter To: clements(a)galaxyproject.org Welcome to the inaugural Software and Data Carpentry newsletter. We are launching this newsletter to keep you well informed around all of the various activities and opportunities in the community. View this email in your browser <http://us14.campaign-archive2.com/?u=46d7513c798c6bd41e5f58f4a&id=13b596f2d…> *September 2016 Carpentries Community Newsletter* *From the Software and Data Carpentry Community Calendar* *October Community Call* - October 20th, 2016 - Come join us <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> for the community call on Thursday October 20th. We will be talking about improving assessment and other community happenings. Have a look at last month’s notes <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> if you missed the call. *Discussion Sessions* - Discussion session times have changed to better accommodate our global community. Two sessions are held every Tuesday alternating between 7:00, 20:00 UTC and 15:00, 23:00 UTC. They’re a great way to prepare for upcoming workshops, debrief on past ones and learn from others in the community. Information about upcoming sessions can be found on the discussion etherpad <http://software-carpentry.us14.list-manage2.com/track/click?u=46d7513c798c6…>, sign up for one if you’ve recently taught or want to reconnect with Software and Data Carpentriy instructors. If you are an experienced instructor, having taught 3 or more times, please consider signing up to lead a session <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…>. Want to learn more, get on the mentoring email list <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> or join a mentoring meeting <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…>. Details are on the community calendar. ------------------------------ *Community Calendar* - with so many activities and subcommittee meetings, we’ve begun to keep a community calendar <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…>. Consider subscribing to the calendar so you can participate in the activities and events that interest you. ------------------------------ *Community News* *New Announcements List - *We’ve created an announcements list <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> to better communicate with community members. You can expect a monthly newsletter and periodic and timely community announcements on this list. It is meant to be the canonical source for information from both Data and Software Carpentry. Feel free to share the signup link <http://software-carpentry.us14.list-manage2.com/track/click?u=46d7513c798c6…> with interested parties. *Nominations for Community Service Award - *We are now accepting nominations <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> for a community service award. Please contribute your nominations so that we can recognize the community members who have made this organization a better place for all of us. *Special Election on Software Carpentry Steering Committee rules -* See the following blog post on rules for SWC Steering Committee <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> voting. This minor tweak serves to ensure that the Software Carpentry Steering Committee continuity is preserved in cases where a large number (or all) Steering Committee members change in an election. *2017 Software Carpentry Steering Committee Election -* It is time to start thinking about the Steering Committee Election coming up in early 2017. If you’re interested in serving on the steering committee, start thinking about a blog post to share your vision for the future of Software Carpentry. We’ll have an official call for blog posts in December and the deadline for them will be in early January. The election will follow 30-days after blog posts from candidates are submitted. *There were or will be talks pertaining to Software and Data Carpentry at - *SciDataCon <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> Denver, Colorado, USA / International Congress of Entomology <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> in Orlando, FL, USA / NETTAB <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> Rome, Italy / US White House Open Data Innovation Summit <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…>, Washington, DC, USA *Please welcome our new instructor trainers* to the instructor training community. Neal Davis (U. Illinois, USA), Karin Lagesen (U. Oslo, Norway), and Anelda van der Walt (Talarify, South Africa). This brings our total number of instructor trainers to 11 globally. If you’re a senior instructor interested in takings steps to become an Instructor Trainer in the future, please contact Greg Wilson <gvwilson(a)software-carpentry.org>. *Sloan Foundation grant to NumFOCUS - *Our fiscal sponsor NumFOCUS received a grant <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> from the Alfred P. Sloan Foundation entitled "Building Capacity for NumFOCUS Open Source Projects to Develop and Sustain Industry Relationships" <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…>. This grant will help all NumFOCUS projects receive training and mentorship related to sustaining Open Source activities that are important to the scientific software community. ------------------------------ *Papers & manuscripts from the community* Our community participated in the creation of the following manuscripts and papers. Please contribute comments to the manuscripts and read/share the papers with your community. *Manuscript* - Ten Simple Rules for Making Research Software More Robust <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…>, please contribute comments here <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> *Manuscript* - Good Enough Practices for Scientific Computing <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…>, please contribute comments here <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> *Pre-print* - A vision for collaborative training infrastructure for bioinformatics <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> (Free pre-print <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> ) Please make suggestions for the Software Carpentry website section on reading material <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> relevant to our community. Pull requests on GitHub are welcome to this file <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> . ------------------------------ *What you may have missed on the blogs and mailing lists* *Teaching with Git and GitHub Desktop <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> *- Discuss thread *Python as a second language <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…>* - Discuss thread *What are the most popular languages by research discipline? <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…>* - Discuss thread *I think I can. Self-efficacy and the Carpentry learner <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…>* - DC Blog Post ------------------------------ *Job postings* Postdoc at rOpenSci <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> - University of California Berkeley Data Science Coordinator <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> - University of California Davis Transparency and Openness Training Coordinator <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> - Center for Open Science Postdoctoral Researcher <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> - The Jackson Laboratory Research Data Manager <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> - Brown University ------------------------------ *Other places to connect* If you can't get enough Software and Data Carpentry. Here are a few other places to connect with our community. *Going to a workshop* or conference, add the details to our events etherpad <http://software-carpentry.us14.list-manage2.com/track/click?u=46d7513c798c6…> and meet other carpenters. *Twitter* - Software Carpentry <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> / Data Carpentry <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> *GitHub* - Software Carpentry <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> / Data Carpentry <http://software-carpentry.us14.list-manage2.com/track/click?u=46d7513c798c6…> Slack <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> / LinkedIn <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> / Facebook <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> Mailing lists <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> Have something you’d like to have included in the next newsltter, please send it to newsletter(a)software-carpentry.org <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> DC <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> DC <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> <http://software-carpentry.us14.list-manage2.com/track/click?u=46d7513c798c6…> DC <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> SWC <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> <http://software-carpentry.us14.list-manage1.com/track/click?u=46d7513c798c6…> SWC <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> <http://software-carpentry.us14.list-manage2.com/track/click?u=46d7513c798c6…> SWC <http://software-carpentry.us14.list-manage.com/track/click?u=46d7513c798c6b…> *Copyright © 2016 The Carpentries, All rights reserved.* You are receiving this email because you signed up to get announcements from the Software and Data Carpentry community. *Our mailing address is:* The Carpentries P.O. Box 90596 Austin, TX 78709 Add us to your address book <http://software-carpentry.us14.list-manage.com/vcard?u=46d7513c798c6bd41e5f…> Want to change how you receive these emails? You can update your preferences <http://software-carpentry.us14.list-manage2.com/profile?u=46d7513c798c6bd41…> or unsubscribe from this list <http://software-carpentry.us14.list-manage.com/unsubscribe?u=46d7513c798c6b…> [image: Email Marketing Powered by MailChimp] <http://www.mailchimp.com/monkey-rewards/?utm_source=freemium_newsletter&utm…> -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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Announcement - new shared training material and technologies for training!
by Björn Grüning 09 Sep '16

09 Sep '16

Dear training enthusiast, We have started to work on an unification of the Galaxy training material as discussed during the GCC 2016. As a first example we have chosen our Exome-Seq tutorial and have ported it over to give a real world example of how we imagine the next generation of Galaxy training looks like. Look by yourself: https://github.com/bgruening/training-material/tree/master/Exome-Seq A few highlights: * Slides are written in reveal.js With this we can create slides in Markdown, which is convenient to write and to share/improve with GitHub. PDFs can be automatically generated and we plan to do this automatically via Travis CI. Moreover these slides can be viewed with every Web browser, so you can watch them while you are exploring our training material, without downloading anything. An example can be found here: http://bgruening.github.io/training-material/Exome-Seq/slides/index.html A reveal.js template is available (http://bgruening.github.io/training-material/shared/slide_template/index.ht…) to get started, with on the first slide the GTN logo and some instructions how to use the presentation. * Docker container for the training We want to make Galaxy training scale. This means every trainer should be able to get a training instance with all tools, reference datasets, example input datasets up and running in minutes. For this, every training will have a versioned Docker container which can be easily deployed on clusters, clouds or laptops. Naturally, these training instances are available for everyone at any time, so they can used by the trained people to redo the workshop and then consolidate the learned techniques. * Galaxy tours! Every training should offer an interactive Galaxy tour. This is especially useful if someone wants to train herself. The interactive Galaxy tour will be in the Docker container. Hence someone using the Docker container can start the interactive tour and follows interactively the instructions. * Persistence and citability of the training data All the training data on which your training is based should be persistent and citable. For this we recommend to upload the datasets on Zenodo (in Galaxy training network community). A DOI associated to these datasets will be generated. The datasets can then be downloaded into the Docker container and reused everywhere. * Landing page An initial landing page is generated automatically from the general README file: http://bgruening.github.io/training-material Some broader plans we have and we need your comments and help! * We would like (and we started) to migrate the other training material in a similar fashion than the Exom-Seq. To get an idea of the current and needed work, check the open PRs on https://github.com/bgruening/training-material/ * We are planning a contribution-fest to consolidate our training material and improve the overall training experience in Galaxy on the 6.-7th October 2016! We will send an invitation to GOBELT and see if someone from them are also interested. * We would like to have the material for RNA-Seq, ChIP-Seq, MethylC-Seq and Genome Annotation updated by the end of this year. * We would like to write about this effort a small manuscript to attract more people and to announce the new capabilities of Galaxy training (tours, self-containing training with Docker …). We will keep a ToDo and discussion list on GitHub under the following URL: https://github.com/bgruening/training-material/issues Please contribute to these discussions and help make Galaxy training outstanding in Bioinformatics! Please let us know what you think! Bérénice and Bjoern P.S. If you want to share this news, please take this link: https://gist.github.com/bgruening/a54a8600c5cddca82424ad13569708c3

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Galaxy Admin Training: November 7-11, Salt Lake City, Utah.
by Dave Clements 06 Sep '16

06 Sep '16

Hello all, This is a request to please help get the word out about the upcoming Galaxy Admin Training event in Salt Lake. Please consider forwarding this announcement to any individuals or groups that might be interested. Thanks, Dave C. The Galaxy Admin Training workshop <https://wiki.galaxyproject.org/Events/AdminTraining2016> will be held November 7-11 in Salt Lake City, Utah, the week before Supercomputing’16 <http://sc16.supercomputing.org/> also meets in Salt Lake. The workshop offers Basic <https://wiki.galaxyproject.org/Events/AdminTraining2016/BasicsSession> and Advanced <https://wiki.galaxyproject.org/Events/AdminTraining2016/AdvancedSession> sessions. Galaxy <https://galaxyproject.org/> is an open web based platform for biomedical data integration and analysis. It is deployed at large and small organizations around the world and used in a broad range of biomedical research domains, and across the tree of life. Galaxy enables life science researchers to perform their own data analysis without having to learn command line interfaces or Linux package management. Galaxy transparently records all analysis steps and eases workflow reuse and sharing. If your organization is looking for how to empower your researchers, then please consider attending one or both sessions. Participants will learn how to install, configure, customize, and extend their own Galaxy servers. Topics include tool configuration, authentication and user management, using heterogeneous storage and compute services, and many other topics that will enable you to get your own Galaxy server up and running, performing well, and used by your community. Registration <https://wiki.galaxyproject.org/Events/AdminTraining2016/Registration> is now open, but space is limited. *Early registration ends September 19*. Participants can register for one or both sessions. Please review each session’s prerequisites before registering. Galaxy Admin Training 2016 is hosted by the University of Utah Center for High Performance Computing (CHPC) <http://www.chpc.utah.edu/>, the Department of Biomedical Informatics <http://medicine.utah.edu/dbmi/> and the Clinical & Translational Science Biomedical Informatics Core (CCTS BMIC) <http://medicine.utah.edu/ccts/bmic/> at the University of Utah <http://utah.edu/>. We hope to see you in Salt Lake! The Galaxy Team PS: Please share this flier <https://wiki.galaxyproject.org/Events/AdminTraining2016/Publicity> with any individuals or groups who might be interested in this event. -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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Fwd: GOBLET AGM and Workshops 2016 - Registration now open
by Dave Clements 24 Aug '16

24 Aug '16

Hello all, The word from GOBLET about the 2016 meeting. Dave C ---------- Forwarded message ---------- From: <Annette.Mcgrath(a)data61.csiro.au> Date: Wed, Aug 24, 2016 at 5:49 AM Subject: GOBLET AGM and Workshops 2016 - Registration now open To: all(a)mygoblet.org All, Registration is now open for the * GOBLET Annual General Meeting and Workshops* in Brisbane, Australia! We hope you will join us for both events. Workshop Dates: November 3-4, 2016 at the Queensland University of Technology (QUT) AGM Dates: November 7-9, 2016 at QUT You can register here for the GOBLET workshops, AGM or both: http://www.abacbs.org/goblet_agm/ *DEADLINE* for registration is *Friday October 14th, 2016*. The draft agenda is attached as well as on the website. More information on the workshops, AGM meeting and travel in Brisbane can be found on the registration website. *LOGISTICS* 1. Three (3) nights hotel, bed and breakfast, will be covered for GOBLET member organizations at the Stamford Plaza, Brisbane <http://www.stamford.com.au/spb> during the GOBLET AGM. This is a city centre location and about a 5 min walk from QUT. The negotiated rate will be available for stays from November 2nd to November 10th, inclusive. Additional nights can be booked at guests own expense during this time at the negotiated rate. Bookings must be made directly through the hotel, but will be expensed by GOBLET for the 3 nights of the AGM. 2. A GOBLET AGM dinner will be held on November 8th and you can indicate your attendance when you register. 3. The workshops and AGM will be catered for all attendees. 4. GOBLET Executive, Gold and Platinum GOBLET members are eligible for subsidised AGM attendance of 500 euros. 5. Organisation of airfares and incidentals is the responsibility of GOBLET AGM attendees *ABACBS National Conference* This year the GOBLET AGM will be held in conjunction with the annual conference of the Australian Bioinformatics and Computational Biology Society <http://www.abacbs.org/conference> (ABACBS) on Nov 1st and 2nd. GOBLET members are very welcome to attend! We look forward to seeing you in Brisbane! Annette McGrath (host) and the GOBLET Executive Team *Annette McGrath* Principal Research Scientist | Team Leader, Life Science Informatics *DATA61 | CSIRO* *E **annette.mcgrath(a)csiro.au <annette.mcgrath(a)csiro.au>* *T* +61 2 6216 7251 | +61 2 6124 1498 *M* +61 467 744 551 GPO Box 664, Canberra, ACT 2601 www.data61.csiro.au *CSIRO’s Digital Productivity business unit and NICTA have joined forces to create digital powerhouse Data61* [image: cid:image001.png@01D0EFD9.052ECFC0] -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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Fwd: Help @ the GOBLET booth @ ISMB
by Dave Clements 06 Jul '16

06 Jul '16

Hello all, If you are going to be at ISMB, GOBLET is looking for people to be at the booth. Thanks, Dave C ---------- Forwarded message ---------- From: Fran Lewitter <lewitter(a)iscb.org> Date: Tue, Jul 5, 2016 at 3:59 PM Subject: Re: Help @ the GOBLET booth @ ISMB To: members(a)mygoblet.org Hi, As many of you know, we will have a booth at ISMB 2016. If you are attending ISMB, please stop by to see us. We still have a few slots open for staffing the booth and to answer questions of those who stop by. Most slots are taken but there are a few left. If you have not yet signed up, please add your name to the Doodle poll (http://doodle.com/poll/wx4bebtgbpzpe7wp) if you are available to help. A few comments - Only 2 people can sign up for a time slot. The most important time for coverage is the opening reception, poster sessions and coffee breaks. Sunday night will be difficult because the poster session overlaps with the ISCB Education Committee meeting. Also, Monday night is the Education poster session, so that's a tough time for coverage as well. Note that the full conference schedule and a mobile app are now available from https://www.iscb.org/ismb2016. Thanks for signing up! Looking forward to seeing you at ISMB. Fran -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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Fwd: ECCB 2016 Notification of Poster presentation - 559
by Björn Grüning 03 Jul '16

03 Jul '16

Hi, the GTN will be at ECCB this year with a poster! Thanks to Youri and Saskia for organising this. Any comments, help are very much appreciated :) Thanks, Bjoern -------- Weitergeleitete Nachricht -------- Delivered-To: bjoern.gruening(a)gmail.com Received: by 10.28.229.148 with SMTP id c142csp364302wmh; Fri, 1 Jul 2016 07:55:54 -0700 (PDT) X-Received: by 10.194.76.33 with SMTP id h1mr4003747wjw.43.1467384954200; Fri, 01 Jul 2016 07:55:54 -0700 (PDT) Return-Path: <eccb2016(a)easychair.org> Received: from easychair.org (easychair.org. [213.136.76.235]) by mx.google.com with ESMTPS id e4si3912682wjt.9.2016.07.01.07.55.54 for <bjoern.gruening(a)gmail.com> (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Fri, 01 Jul 2016 07:55:54 -0700 (PDT) Received-SPF: pass (google.com: best guess record for domain of eccb2016(a)easychair.org designates 213.136.76.235 as permitted sender) client-ip=213.136.76.235; Authentication-Results: mx.google.com; spf=pass (google.com: best guess record for domain of eccb2016(a)easychair.org designates 213.136.76.235 as permitted sender) smtp.mailfrom=eccb2016(a)easychair.org Received: from localhost.localdomain (m2635.contabo.net [213.136.76.235]) by easychair.org (8.14.4/8.14.4/Debian-4.1ubuntu1) with ESMTP id u61Etrxj032019 for <bjoern.gruening(a)gmail.com>; Fri, 1 Jul 2016 16:55:53 +0200 Message-Id: <201607011455.u61Etrxj032019(a)easychair.org> Content-Disposition: inline Content-Transfer-Encoding: binary Content-Type: text/plain; charset="UTF-8" MIME-Version: 1.0 X-Mailer: MIME::Lite 3.030 (F2.84; A2.14; B3.15; Q3.13) Date: Fri, 1 Jul 2016 16:55:53 +0200 From: ECCB 2016 <eccb2016(a)easychair.org> To: Bjoern Grüning <bjoern.gruening(a)gmail.com> Subject: ECCB 2016 Notification of Poster presentation - 559 Dear Bjoern, It is our pleasure to inform you that your abstract The Galaxy Training Network: centralizing resources for galaxy trainings with submission number 559 has been accepted for a poster presentation at ECCB 2016. You will receive additional information by email if you submitted your poster for one of the sub tracks (ELIXIR, Training or Applications). You can find more information about the poster presentations on the poster presenter page: http://www.eccb2016.org/programme/posters/ You can register for the conference via: https://www.eccb2016.org/registration/. Please notice that the early bird registration deadline is 29 July 2016! Please note that we will open a F1000 channel for the ECCB 2016! The channel will be online on July 22nd and open for your poster submissions. More information about this will be available on our website soon. If you need an invitation letter to be able to obtain a visa or funding, please follow the following procedure: * register for the conference: you can create your own visa or presentation invitation letter via the registration procedure, but you will have to register first; * to get acces to your invitation letter, please click the 'Modify Registration' link stated in the confirmation email that will be sent to you after finishing your registration; * you will find a 'Letter of Invitation' button at the bottom of the page. Follow this and you will find a form that you should fill out, after which you will be able to print your invitation letter. If for any reason you decide to withdraw your poster presentation, please let us know via posters(a)eccb2016.org. We are looking forward to seeing you in The Hague! Cheers, Matti Nykter ECCB 2016 Poster chair For further questions, please contact: posters(a)eccb2016.org

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Fwd: GOBLET AGM 2016 information
by Dave Clements 15 Jun '16

15 Jun '16

Hello all, Here's the latest information about the GOBLET meeting in Brisbane in November. Annette will be at GCC2016 this month if you want to talk to her about the meeting. Thanks, Dave C ---------- Forwarded message ---------- From: <Annette.Mcgrath(a)csiro.au> Date: Tue, Jun 14, 2016 at 5:25 PM Subject: GOBLET AGM 2016 information To: all(a)mygoblet.org Hi I’m delighted to be able to provide some additional information about the upcoming GOBLET AGM which will be held in Brisbane, Australia in November 2016. *Dates* Workshops: Thurs Nov 3rd and Fri Nov 4th, 2016 AGM: Mon Nov 7th to Wed Nov 9th, 2016 Location: Workshops and the AGM will be held at the Queensland University of Technology (QUT), Brisbane, Australia *Logistics* Three nights hotel, bed and breakfast, will be covered for eligible GOBLET members at the Stamford Plaza, Brisbane <http://www.stamford.com.au/spb> during the GOBLET AGM. This is a city centre location and about a 5 min walk from QUT. The negotiated rate will be available for stays from November 2nd to November 10th, inclusive. Additional nights can be booked at guests own expense during this time at the negotiated rate. A GOBLET AGM dinner will be held on Nov 8th and you can indicate your attendance when you register. The workshops and AGM will be catered for all attendees. GOBLET Executive, Gold and Platinum GOBLET members are eligible for subsidised AGM attendance of 500 euros. Airfares are the responsibility of GOBLET AGM attendees. *Registration* GOBLET AGM and workshop registrations and hotel bookings will open next week. *ABACBS National Conference* This year the GOBLET AGM will be held in conjunction with the annual conference of the Australian Bioinformatics and Computational Biology Society <http://www.abacbs.org/conference> (ABACBS) on Nov 1st and 2nd. GOBLET members are very welcome to attend! Looking forward to seeing you in Brisbane in November Annette *Annette McGrath* Principal Research Scientist | Team Leader, Life Science Informatics *DATA61 | CSIRO* *E *annette.mcgrath(a)csiro.au *T* +61 2 6216 7251 | +61 2 6124 1498 *M* +61 467 744 551 GPO Box 664, Canberra, ACT 2601 www.data61.csiro.au *CSIRO’s Digital Productivity business unit and NICTA have joined forces to create digital powerhouse Data61* [image: cid:image001.png@01D0EFD9.052ECFC0] -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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Fwd: last chance to register for Lifelong Learning in the Biomedical sciences
by Dave Clements 02 Jun '16

02 Jun '16

Hello all, Forwarding from the GOBLET list. Dave C ---------- Forwarded message ---------- From: Cath Brooksbank <cath(a)ebi.ac.uk> Date: Thu, Jun 2, 2016 at 7:57 AM Subject: last chance to register for Lifelong Learning in the Biomedical sciences To: ritrain-all(a)lists.bbmri-eric.eu, "corbel-training(a)lists.bbmri-eric.eu" < corbel-training(a)lists.bbmri-eric.eu>, " training-coordinators(a)elixir-europe.org" < training-coordinators(a)elixir-europe.org>, "all(a)mygoblet.org" < all(a)mygoblet.org>, "bioexcel-all(a)pdc.kth.se" <bioexcel-all(a)pdc.kth.se> Dear all With apologies for the inevitable duplication caused by posting to multiple lists, the abstract submission and registration deadlines for our exciting new conference, 'Lifelong Learning in the Biomedical Sciences' , *will close on 6 June 2016*. Please register now to avoid disappointment. We'd also be immensely grateful if you could help to spread the word around your own networks. Many thanks in advance for your help! Best Cath ---------------------------------------- We all know that competent scientists, who are committed to staying at the leading edge of developments in their field and constantly improving their professional skills, are the underlying foundation of successful research and development; yet research infrastructures and other research organisations invest comparatively little time in developing their staff. On behalf of the organising committee I am writing to cordially invite you to attend the EMBL Conference on *Lifelong Learning in the Biomedical Sciences*. This conference is a new international forum to bring together the key influencers, policymakers, trainers and stakeholders from academia, industry and the professional bodies who will shape and implement how career-long continuing professional development is managed in the future. It will encompass career-long continuing professional development for both the academic and industry sectors. The conference will take place in Heidelberg, Germany on 5-7 July 2016 ( www.embl.de/training/events/2016/LLL16-01). Participating in this conference will provide you with: - insight in the latest developments in education and training for biomedical professionals - an introduction to competency profiles as effective means to support recruitment and retention of key staff - means to empower your staff to manage their own continuing professional development (CPD) - opportunities to network with others with a passion for education and training in the biomedical sciences - a choice of interactive workshops to assist delegates to implement continuing professional development practices in their organisations or contribute to further discussions of conference topics We invite you to submit your abstract and/or workshop proposal by *6 June 2016*. General registration is also open until *6 June 2016*. We are looking forward to your registration and to seeing you in Heidelberg! Best regards Cath On behalf of the Organising Committee -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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Fwd: Submit your training poster to ECCB2016!
by Dave Clements 19 May '16

19 May '16

Hi All, ECCB has added a training category for it's poster section. See below for details and deadlines. Dave C ---------- Forwarded message ---------- From: <Celia.vanGelder(a)radboudumc.nl> Date: Tue, May 10, 2016 at 12:24 PM Subject: Submit your training poster to ECCB2016! To: all(a)mygoblet.org Dear colleagues, I would like to remind you of the Poster call deadline for the ECCB 2016, which is organised in September (Sept. 3-7, 2016) in The Hague in The Netherlands. You can submit posters for the following categories/application domains: Health, Agro-Food, Biotechnology, Ecosystems, Fundamental and *Training.* We recently decided to add a Training category/application domain, so posters submitted for this category can be presented as a group during the poster sessions at the conference. We would like to invite you to submit your training and education related activities as a poster abstract to the conference. You can find more information about the call here: http://www.eccb2016.org/calls/posters/. *Submission deadline for poster abstracts: June 3, 2016* Best regards on behalf of the ECCB2016 Programme Committee, Celia Dr. Celia W.G. van Gelder Education Manager BioSB Programme Manager Learning DTL/ELIXIR-NL tel. +31613375327 e-mail: celia.van.gelder(a)dtls.nl websites: www.biosb.nl, www.dtls.nl Het Radboudumc staat geregistreerd bij de Kamer van Koophandel in het handelsregister onder nummer 41055629. The Radboud university medical center is listed in the Commercial Register of the Chamber of Commerce under file number 41055629. -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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