- Galaxy-training - lists.galaxyproject.org

Fwd: GOBLET Second Quarter Newsletter 2017
by Dave Clements 19 Jul '17

19 Jul '17

Hi All, The GOBLET newsletter is out, and it includes a writeup of the May training materials hackathon, s well as info about ISMB and the annual GOBLET meeting. Cheers, Dave C ---------- Forwarded message ---------- From: Ann Meyer <Ann.Meyer(a)oicr.on.ca> Date: Wed, Jul 19, 2017 at 11:35 AM Subject: GOBLET Second Quarter Newsletter 2017 To: "all(a)mygoblet.org" <all(a)mygoblet.org> Hello everyone, The Outreach & PR committee is proud to announce that the second GOBLET Newsletter for 2017 is out! A copy is attached to this email and it is available http://www.mygoblet.org/announcements/second-goblet- newsletter-2017. Please distribute the newsletter within your own channels. If you have any news items you would like featured in the next newsletter, please send an email to pr(a)mygoblet.org. >From your GOBLET Outreach and PR Committee. -- *Ann Meyer, PhD *Manager, Knowledge and Research Exchange *Ontario Institute for Cancer Research* MaRS Centre 661 University Avenue Suite 510 Toronto, Ontario Canada M5G 0A3 Email: Ann.Meyer(a)oicr.on.ca Phone: 647-260-7925 Cell: 647-295-2612 Toll-free: 1-866-678-6427 Twitter: @OICR_news www.oicr.on.ca This message and any attachments may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this message in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this message may not be that of the organization. -- https://galaxyproject.org/ https://getgalaxy.org/ https://usegalaxy.org/ https://gcc2017.sciencesconf.org/

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Fwd: Highlights from the GOBLET Executive desk - July 2017
by Dave Clements 12 Jul '17

12 Jul '17

Hello all, The latest from GOBLET. Dave C ---------- Forwarded message ---------- From: Michelle Brazas <Michelle.Brazas(a)oicr.on.ca> Date: Wed, Jul 12, 2017 at 8:01 AM Subject: Highlights from the GOBLET Executive desk - July 2017 To: "all(a)mygoblet.org" <all(a)mygoblet.org> We are trying out some new communication mechanisms, to keep you informed on what the GOBLET Executive and Committees are up to each month. GOBLET Executive *Highlights from the GOBLET Executive desk for July 2017* * GOBLET plans for ISMB/ECCB 2017 are taking shape. GOBLET will be in Prague with a booth, new updated banners, other advertising materials and two posters, so please come visit us. * The GOBLET AGM 2017 registration pages have been posted to the GOBLET website under announcements and upcoming events. Register to attend the AGM in Oeiras. * Individual and organizational members should be receiving their membership renewal notifications from Celia. * GOBLET has received a donation from EMBnet. The donation will be used to fund development of branded training materials beginning August 1, 2017. -- *Michelle D. Brazas, Ph.D.* Senior Program Manager, Adaptive Oncology To learn about our Informatics services, click here <http://oicr.on.ca/collaborative-research-resources#hide2> *Ontario Institute for Cancer Research* MaRS Centre 661 University Avenue, Suite 510 Toronto, Ontario, Canada M5G 0A3 Tel: 416-673-8502 Cell: 416-357-6687 FAX: 416-977-7446 Toll-free: 1-866-678-6427 ext. 8502 Email: *michelle.brazas(a)oicr.on.ca* <*http://michelle.brazas@oicr.on.ca <http://michelle.brazas@oicr.on.ca/>*> www.oicr.on.ca -- https://galaxyproject.org/ https://getgalaxy.org/ https://usegalaxy.org/ https://gcc2017.sciencesconf.org/

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Re: [gxy-train] a Birds-of-a-Feather meeting for the Computational Biology Education (CoBE) Community at ISMB Prague
by Doyle Maria 07 Jun '17

07 Jun '17

Hi Dave, Hans-Rudolf, all, I don't know if these are GTN needs or just mine :) but aswell as what Dave put, what about... For the Galaxy training material that's being developed it would be great to have as many bioinformatics trainers as possible be aware that it exists and also try it out and give feedback on how they find it. How to best link in with other bioinformatics groups/networks/trainers for awareness of what each other are doing, sharing learnings/resources, collaborating on things of common interest etc. As I think the Galaxy Training Network Github is a great idea, and for trainers like me who also teach other bioinformatics software it could be great if there were also centralized Githubs/communities for collaborative development of high-quality bioinformatics training for R, Python, Command Line, HPC etc (they could maybe even use the same datasets where appropriate). Cheers, Maria Maria Doyle Application and Training Specialist Research Computing Facility [http://i.imgur.com/tG0nMXg.jpg] From: Galaxy-training <galaxy-training-bounces(a)lists.galaxyproject.org<mailto:galaxy-training-bounces@lists.galaxyproject.org>> on behalf of Dave Clements <clements(a)galaxyproject.org<mailto:clements@galaxyproject.org>> Date: Wednesday, 7 June 2017 at 5:50 AM To: Hans-Rudolf Hotz <hrh(a)fmi.ch<mailto:hrh@fmi.ch>> Cc: Galaxy-Training List <galaxy-training(a)lists.galaxyproject.org<mailto:galaxy-training@lists.galaxyproject.org>> Subject: [SPAM][M] Re: [gxy-train] a Birds-of-a-Feather meeting for the Computational Biology Education (CoBE) Community at ISMB Prague Hi Hans-Rudolf, all Most likely, you are already aware of this...... I wasn't aware of any of this! Thanks for posting the links. The "Computational Biology Education (CoBE) Community" - a Community of Special Interest at the ISMB/ECCB conference - is organizing a Birds-of-a-Feather meeting: http://tinyurl.com/ybl6jfxn This is in addition to the workshop (https://www.iscb.org/cms_addon/conferences/ismbeccb2017/workshops.php#WK01) they are organizing already Should GTN be present at this BoF? I think so. That BoF is during BOSC, which is unfortunate, and which may mean that no one will actually be able to attend (see https://galaxyproject.org/events/2017-ismb-bosc/ for Galaxy-related content I know about). Does anyone think they would be able to attend this BoF? The post says: Even if you are unable to attend the BoF, we welcome your input. So I think we should at least do that, even, if we don't have anyone who can make it. The posts asks for: please provide 2 to 3 bullet points identifying the educational goals and needs of your community. Here's a start Galaxy Training Network - Goals: Scale bioinformatics and Galaxy training; - make it easy to find trainers, training events, and training materials - make it easy to collaboratively create, maintain, and share training materials - Needs: How to make this happen, when very few of us are full-time trainers Thoughts? (And I think that needs statement is weak.) Thanks, Dave C Regards, Hans-Rudolf -- Hans-Rudolf Hotz, PhD Bioinformatics Support Friedrich Miescher Institute for Biomedical Research Maulbeerstrasse 66 4058 Basel/Switzerland -- https://galaxyproject.org/ https://getgalaxy.org/ https://usegalaxy.org/ https://gcc2017.sciencesconf.org/ This email (including any attachments or links) may contain confidential and/or legally privileged information and is intended only to be read or used by the addressee. If you are not the intended addressee, any use, distribution, disclosure or copying of this email is strictly prohibited. Confidentiality and legal privilege attached to this email (including any attachments) are not waived or lost by reason of its mistaken delivery to you. If you have received this email in error, please delete it and notify us immediately by telephone or email. Peter MacCallum Cancer Centre provides no guarantee that this transmission is free of virus or that it has not been intercepted or altered and will not be liable for any delay in its receipt.

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a Birds-of-a-Feather meeting for the Computational Biology Education (CoBE) Community at ISMB Prague
by Hans-Rudolf Hotz 06 Jun '17

06 Jun '17

Hi all Most likely, you are already aware of this...... The "Computational Biology Education (CoBE) Community" - a Community of Special Interest at the ISMB/ECCB conference - is organizing a Birds-of-a-Feather meeting: http://tinyurl.com/ybl6jfxn This is in addition to the workshop (https://www.iscb.org/cms_addon/conferences/ismbeccb2017/workshops.php#WK01) they are organizing already Should GTN be present at this BoF? Regards, Hans-Rudolf -- Hans-Rudolf Hotz, PhD Bioinformatics Support Friedrich Miescher Institute for Biomedical Research Maulbeerstrasse 66 4058 Basel/Switzerland

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Fwd: [BBC] ELIXIR/GOBLET/GTN hackathon for Galaxy training material re-use
by Dave Clements 22 Mar '17

22 Mar '17

Hello all, The announcement below is perhaps the most relevant announcement I've ever sent to this list. :-) I'm planning on being there, and it would be great to have you there as well. Applications are due 31 March. See you in Cambridge, Dave C ---------- Forwarded message ---------- From: Frederik Coppens <frcop(a)psb.vib-ugent.be> Date: Tue, Mar 21, 2017 at 1:28 AM Subject: [BBC] ELIXIR/GOBLET/GTN hackathon for Galaxy training material re-use To: bbclist(a)psb.vib-ugent.be Dear all we are organizing an ELIXIR/GOBLET/GTN hackathon for Galaxy training material re-use, aiming to extend and improve the content of the Galaxy Training material repo (https://github.com/galaxy-project/training-material <https://github.com/bgruening/training-material>). You can find more details here <https://docs.google.com/document/d/1dLCL5-2pkWTvmGTz7GyQkb5LEIZ3FBkPvCBoqUP…> . This workshop will take place in Cambridge, UK from 22nd to 24th of May in the framework of ELIXIR-EXCELERATE. If you have experience and interest in improving, streamlining, sharing of training performed using Galaxy, consider to join ! To ensure the hackathon is relevant for all participants, there is a selection procedure. *Details how to apply are here <https://docs.google.com/document/d/1dLCL5-2pkWTvmGTz7GyQkb5LEIZ3FBkPvCBoqUP…>, please do so before March 31st !* We will get back to you asap. cheers the organizing committee *Frederik Coppens* - Project leader & IT manager Applied Bioinformatics And Biostatistics I.T. Support *VIB-UGent Center for Plant Systems Biology* Ghent University Technologiepark 927 - 9052 Ghent - Belgium Tel. +32(0)9 331 38 12 www.psb.ugent.be _______________________________________________ BBClist mailing list BBClist(a)psb.ugent.be https://maillist.psb.ugent.be/mailman/listinfo/bbclist -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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GOBLET First Quarter Newsletter 2017
by Doyle Maria 07 Mar '17

07 Mar '17

Hello all, Just to let you know the first GOBLET newsletter of 2017 is out now. It’s attached here as a pdf and can also found at the link below. Cheers, Maria Maria Doyle Application and Training Specialist Research Computing Facility [http://i.imgur.com/tG0nMXg.jpg] From: Ann Meyer <Ann.Meyer(a)oicr.on.ca<mailto:Ann.Meyer@oicr.on.ca>> Date: Tuesday, 7 March 2017 at 3:58 AM To: "all(a)mygoblet.org<mailto:all@mygoblet.org>" <all(a)mygoblet.org<mailto:all@mygoblet.org>> Subject: GOBLET First Quarter Newsletter 2017 Hello everyone, The Outreach & PR committee is proud to announce that the first GOBLET Newsletter for 2017 is out! A copy is attached to this email and it is available at http://mygoblet.org/announcements/goblet-newsletter-0. Please distribute the newsletter within your own channels. If you have any news items you would like featured in the next newsletter, please send an email to pr(a)mygoblet.org<mailto:pr@mygoblet.org>. >From your GOBLET PR and Outreach Committee. -- Ann Meyer, PhD Manager, Knowledge and Research Exchange Ontario Institute for Cancer Research MaRS Centre 661 University Avenue Suite 510 Toronto, Ontario Canada M5G 0A3 Email: Ann.Meyer(a)oicr.on.ca<mailto:Ann.Meyer@oicr.on.ca> Phone: 647-260-7925 Cell: 647-295-2612 Toll-free: 1-866-678-6427 Twitter: @OICR_news www.oicr.on.ca<%22http://> This message and any attachments may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this message in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this message may not be that of the organization. This email (including any attachments or links) may contain confidential and/or legally privileged information and is intended only to be read or used by the addressee. If you are not the intended addressee, any use, distribution, disclosure or copying of this email is strictly prohibited. Confidentiality and legal privilege attached to this email (including any attachments) are not waived or lost by reason of its mistaken delivery to you. If you have received this email in error, please delete it and notify us immediately by telephone or email. Peter MacCallum Cancer Centre provides no guarantee that this transmission is free of virus or that it has not been intercepted or altered and will not be liable for any delay in its receipt.

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Urgent: GCC - GTN presentations and workshop
by Björn Grüning 24 Jan '17

24 Jan '17

Hi GTN! Today is the deadline to hand-in workshop proposals. Sorry for the late notice. We were thinking of handing in a session about: * GTN github repo + template * Galaxy tours * Best-practices * Some kind of train the trainer * Galaxy-Hub ? A mixture or only parts of it, not sure. Do you think we should do this? Other ideas? What about a Galaxy GTN talk? Please let me know what you think, Bjoern

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Fwd: GOBLET AGM2017 in Portugal - save the date!
by Dave Clements 18 Jan '17

18 Jan '17

Hi All, The GOBLET 2017 meeting will be held in Portugal on Nov 22-24. Cheers, DaveC ---------- Forwarded message ---------- From: Pedro L. Fernandes <pfern(a)igc.gulbenkian.pt> Date: Wed, Jan 18, 2017 at 3:34 AM Subject: GOBLET AGM2017 in Portugal - save the date! To: "all(a)mygoblet.org" <all(a)mygoblet.org> Dear All @ (my)GOBLET, The Operational Board of GOBLET met on January 17th 2017 and decided to close the Doodle and take the most voted option. The GOBLET AGM2017 will take place in Oeiras, Portugal, on Nov 22nd-24th. Please SAVE the date in your calendars. Preparatory work has already started. Further news on the venue, logistics, program and preparations will be communicated in due time, just be attentive to our e-mail communications. Best wishes Pedro (Pedro Fernandes, Local organiser, GOBLET AGM2017) -- Pedro Fernandes Instituto Gulbenkian de Ciência Apartado 14 2781-901 OEIRAS PORTUGAL Tel +351 21 4407912 http://gtpb.igc.gulbenkian.pt -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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2017 GOBLET AGM
by Doyle Maria 12 Jan '17

12 Jan '17

Hi all and happy 2017! Just to let you all know the 2017 GOBLET AGM will be held in November in Portugal, and if you'd like to express a preference for the suggested dates there's a Doodle poll below that you can add to before 23rd January. http://doodle.com/poll/2fhxfxn6pu5vasi8 Cheers, Maria Maria Doyle Application and Training Specialist Research Computing Facility [http://i.imgur.com/tG0nMXg.jpg] 305 Grattan Street<x-apple-data-detectors://2/2> Melbourne, Victoria<x-apple-data-detectors://2/2> 3000 Australia<x-apple-data-detectors://2/2> This email (including any attachments or links) may contain confidential and/or legally privileged information and is intended only to be read or used by the addressee. If you are not the intended addressee, any use, distribution, disclosure or copying of this email is strictly prohibited. Confidentiality and legal privilege attached to this email (including any attachments) are not waived or lost by reason of its mistaken delivery to you. If you have received this email in error, please delete it and notify us immediately by telephone or email. Peter MacCallum Cancer Centre provides no guarantee that this transmission is free of virus or that it has not been intercepted or altered and will not be liable for any delay in its receipt.

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Fwd: [sib-courses] SIB and ELIXIR Train-the-Trainer course, Lausanne, 16-18 January 2017
by Dave Clements 29 Dec '16

29 Dec '16

Hi All, Just came across this. It's in about three weeks. Dave C ---------- Forwarded message ---------- From: Diana Marek <Diana.Marek(a)sib.swiss> Date: Wed, Dec 14, 2016 at 8:12 AM Subject: [sib-courses] SIB and ELIXIR Train-the-Trainer course, Lausanne, 16-18 January 2017 To: courses(a)lists.isb-sib.ch Dear all, We are pleased to announce the SIB and ELIXIR Train-the-Trainer course. <http://www.sib.swiss/training/upcoming-training-events/2017-ttt> This ELIXIR Train-the-Trainer course, organized by ELIXIR-Switzerland (SIB) and ELIXIR-Italy, will take place on 16-18 January 2017 in Lausanne. Train-the-Trainer courses are for scientists with some to little or no teaching experience, who believe teaching is - or may become - a relevant aspect of their professional development.This course will cover 4 main themes: 1. learning principles applied to education and training; 2. techniques used to enhance learner engagement and participation; 3. design of sessions, courses and materials; 4. assessment and feedback in training. The participants will also sit in an actual SIB Unix command line course to observe how effective techniques are applied in a real-world training class. Read more and register here <http://www.sib.swiss/training/upcoming-training-events/2017-ttt?acm=21_106> . Further detailed information, programme and application form are available from here <http://www.sib.swiss/training/upcoming-training-events/2017-ttt>. Any question? Don't hesitate to contact us at training(a)sib.swiss. Hope to see you there! Best wishes, Diana Marek -- *Diana Marek, PhD Vital-IT - Training & Outreach **SIB | Swiss Institute of Bioinformatics* Quartier Sorge - Bâtiment Génopode - CH 1015 Lausanne - Switzerland t +41 21 692 40 77 - f +41 21 692 40 65 New email: Diana.Marek(a)sib.swiss www.vital-it.ch - www.sib.swiss/training _______________________________________________ SIB courses mailing list To unsubscribe, email courses-unsubscribe(a)lists.isb-sib.ch or visit http://lists.isb-sib.ch/mailman/listinfo/courses -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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