galaxy-proteomics
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October 2013
- 3 participants
- 2 discussions
What version of Galaxy did you clone and are running when you get this
error?
http://bitbucket.org/galaxy/galaxy-central/
http://bitbucket.org/galaxy/galaxy-dist/
http://bitbucket.org/galaxyp/galaxyp-central/
Once we have this answer we can help you debug the error.
On Mon, Oct 21, 2013 at 8:25 AM, John Chilton <chil0060(a)umn.edu> wrote:
>
>
> ---------- Forwarded message ----------
> From: Gerben Menschaert <gerben.menschaert(a)gmail.com>
> Date: Mon, Oct 21, 2013 at 4:40 AM
> Subject: Re: ASMS Follow Up
> To: John Chilton <chil0060(a)umn.edu>
>
>
> Hello John Mitchel,
>
> I hope you can help out.
> PeptideShaker used to be on our Galaxy-P environment, but I removed it.
> I'm trying to re-install it again from the toolshed.
>
> While doing so, I bumped into the following error (see below).
>
> Could you point me in the good directory.
>
>
> Many thanks in advance,
> Gerben Menschaert
>
>
> PS: Also, is there a special GALAXY-P user/development mailing list?
>
>
> ⇝ KeyError: 'tool_panel_section'
> URL:
> http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True
> Module weberror.evalexception.middleware:*364* in respond <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> view<http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> >> <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> app_iter *=* self*.*application*(*environ*,* detect_start_response*)*
> Module paste.recursive:*80* in __call__ <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> view<http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> >> <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> *return* self*.*application*(*environ*,* start_response*)*
> Module paste.httpexceptions:*633* in __call__ <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> view<http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> >> <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> *return* self*.*application*(*environ*,* start_response*)*
> Module galaxy.web.framework.base:*132* in __call__ <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> view<http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> >> <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> *return* self*.*handle_request*(* environ*,* start_response *)*
> Module galaxy.web.framework.base:*190* in handle_request <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> view<http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> >> <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> body *=* method*(* trans*,* ****kwargs *)*
> Module galaxy.web.framework:*221* in decorator <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> view<http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> >> <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> *return* func*(* self*,* trans*,* ***args*,* ****kwargs *)*
> Module galaxy.webapps.galaxy.controllers.admin_toolshed:*850* in
> prepare_for_install <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> view<http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> >> <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> repository_util*.*handle_tool_shed_repositories*(* trans*,*
> installation_dict*,* using_api*=*False *)*
> Module tool_shed.galaxy_install.repository_util:*338* in
> handle_tool_shed_repositories <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> view<http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> >> <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%3A7b22706570746964657368616b6572223a205b2254686973207265706f7369746f727920636f6e7461696e73206120746f6f6c20746861742077726170732053656172636847554920616e6420506570746964655368616b65722e20222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564752f7265706f732f67616c617879702f706570746964657368616b6572222c2022313836666463346233333130222c20223136222c202267616c61787970222c207b22726f6f745f6b6579223a2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564755f5f455345505f5f706570746964657368616b65725f5f455345505f5f67616c617879705f5f455345505f5f3138366664633462333331305f5f455345505f5f46616c7365222c20226465736372697074696f6e223a202252657175697265642070726f74656f6d69637320646570656e64656e636965732e222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564755f5f455345505f5f706570746964657368616b65725f5f455345505f5f67616c617879705f5f455345505f5f3138366664633462333331305f5f455345505f5f46616c7365223a205b5b22687474703a2f2f746f6f6c736865642e67322e62782e7073752e656475222c202270726f74656f6d6963735f646174617479706573222c2022697261636f6f6b65222c2022663734323930623133366663222c202246616c7365225d2c205b22687474703a2f2f746f6f6c736865642e67322e62782e7073752e656475222c20227061636b6167655f7365617263686775695f315f31345f34222c202267616c61787970222c2022363764653531643532393037222c202246616c7365225d2c205b22687474703a2f2f746f6f6c736865642e67322e62782e7073752e656475222c20227061636b6167655f706570746964657368616b65725f305f32305f31222c202267616c61787970222c2022636664353562366334666132222c202246616c7365225d5d7d2c207b22706570746964655f7368616b65722f302e32302e31223a207b227265706f7369746f72795f6e616d65223a2022706570746964657368616b6572222c20226e616d65223a2022706570746964655f7368616b6572222c202276657273696f6e223a2022302e32302e31222c20227265706f7369746f72795f6f776e6572223a202267616c61787970222c20226368616e67657365745f7265766973696f6e223a2022313836666463346233333130222c202274797065223a20227061636b616765227d2c20227365617263686775692f312e31342e31223a207b227265706f7369746f72795f6e616d65223a2022706570746964657368616b6572222c20226e616d65223a2022736561726368677569222c202276657273696f6e223a2022312e31342e31222c20227265706f7369746f72795f6f776e6572223a202267616c61787970222c20226368616e67657365745f7265766973696f6e223a2022313836666463346233333130222c202274797065223a20227061636b616765227d7d5d7d&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> new_tool_panel_section*=*new_tool_panel_section *)*
> Module tool_shed.util.repository_dependency_util:*149* in
> create_repository_dependency_objects <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> view<http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> >> <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> common_install_util*.*activate_repository*(* trans*,*
> installed_tool_shed_repository *)*
> Module tool_shed.util.common_install_util:*36* in activate_repository
> <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> view<http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%3A7b22706570746964657368616b6572223a205b2254686973207265706f7369746f727920636f6e7461696e73206120746f6f6c20746861742077726170732053656172636847554920616e6420506570746964655368616b65722e20222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564752f7265706f732f67616c617879702f706570746964657368616b6572222c2022313836666463346233333130222c20223136222c202267616c61787970222c207b22726f6f745f6b6579223a2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564755f5f455345505f5f706570746964657368616b65725f5f455345505f5f67616c617879705f5f455345505f5f3138366664633462333331305f5f455345505f5f46616c7365222c20226465736372697074696f6e223a202252657175697265642070726f74656f6d69637320646570656e64656e636965732e222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564755f5f455345505f5f706570746964657368616b65725f5f455345505f5f67616c617879705f5f455345505f5f3138366664633462333331305f5f455345505f5f46616c7365223a205b5b22687474703a2f2f746f6f6c736865642e67322e62782e7073752e656475222c202270726f74656f6d6963735f646174617479706573222c2022697261636f6f6b65222c2022663734323930623133366663222c202246616c7365225d2c205b22687474703a2f2f746f6f6c736865642e67322e62782e7073752e656475222c20227061636b6167655f7365617263686775695f315f31345f34222c202267616c61787970222c2022363764653531643532393037222c202246616c7365225d2c205b22687474703a2f2f746f6f6c736865642e67322e62782e7073752e656475222c20227061636b6167655f706570746964657368616b65725f305f32305f31222c202267616c61787970222c2022636664353562366334666132222c202246616c7365225d5d7d2c207b22706570746964655f7368616b65722f302e32302e31223a207b227265706f7369746f72795f6e616d65223a2022706570746964657368616b6572222c20226e616d65223a2022706570746964655f7368616b6572222c202276657273696f6e223a2022302e32302e31222c20227265706f7369746f72795f6f776e6572223a202267616c61787970222c20226368616e67657365745f7265766973696f6e223a2022313836666463346233333130222c202274797065223a20227061636b616765227d2c20227365617263686775692f312e31342e31223a207b227265706f7369746f72795f6e616d65223a2022706570746964657368616b6572222c20226e616d65223a2022736561726368677569222c202276657273696f6e223a2022312e31342e31222c20227265706f7369746f72795f6f776e6572223a202267616c61787970222c20226368616e67657365745f7265766973696f6e223a2022313836666463346233333130222c202274797065223a20227061636b616765227d7d5d7d&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> >> <http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#>
> tool_panel_dict *=* repository*.*metadata*[* 'tool_panel_section' *]*
> *KeyError: 'tool_panel_section'*
> *
> *
>
>
>
>
> On Jun 17, 2013, at 4:52 PM, John Chilton <chil0060(a)umn.edu> wrote:
>
> On behalf of myself and my colleague Jim Johnson, I wanted to thank
> you for dropping by one or both of our posters. You can find digital
> copies of both poster below.
>
> "Reproducible Proteomic Workows using Extensions to the Galaxy Framework"
> http://getgalaxyp.org/documents/asms2013_galaxy_extensions.pdf
>
> "Building Proteomic Application Platforms for Cloud Computing
> Environments with CloudBioLinux"
> http://getgalaxyp.org/documents/asms2013_cloud_computing.pdf
>
> We had a great time last Monday and agree that a lot of good ideas
> were generated. If you have specific questions, comments, or
> suggestions please do not hesitate to drop us a line. (I have cc'ed
> Jim Johnson, as well Dr. Pratik Jagtap the Galaxy-P project manager,
> Dr. Ben Lynch the head of application development at MSI, and Dr.
> Timothy Griffin the principle investigator for Galaxy-P on this
> e-mail. Feel free to direct questions to whomever you feel is most
> appropriate.)
>
> You can find more information about Galaxy-P at http://getgalaxyp.org/
> and try our public server at https://usegalaxyp.org/. You can find
> more information about Galaxy more broadly at
> http://galaxyproject.org/ and CloudBioLinux at
> http://cloudbiolinux.org/. All of our source code is open source and
> available at various places on BitBucket and GitHub, if you are
> interested in any particular part of what we have done let me know
> which and I can point you to it.
>
> Thanks again,
> -John
>
> ------------------------------------------------
> John Chilton
> Senior Software Developer
> University of Minnesota Supercomputing Institute
> Office: 612-625-0917
> Cell: 612-226-9223
>
>
>
>
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Hello all,
There was something buries in the October Galaxy Update newsletter that
just went out that might be of interest to this group. One of the new
public Galaxy servers has several proteomics tools on it:
USP-FCFRP
[image: Laboratory of Biological Physics at
USP-FCFRP]<http://fisbio.fcfrp.usp.br:8080/>
-
*Link:*
-
Laboratory of Biological Physics at
USP-FCFRP<http://fisbio.fcfrp.usp.br:8080/>
-
*Domain/Purpose:*
- Summary of the currently available tools:
-
*ProtPred-GROMACS*: *Ab initio* protein structure prediction
framework which uses evolutionary algorithms to optimize objective
functions such as potential energy, number of hydrogen bonds
and solvent
accessible surface area.
-
2PG: Faster and simpler algorithm in which one objective
function is optimized
3PG: A more robust approach in which multiple objective
functions are optimized at the same time
*Protein Validation*: Check the integrity of a PDB file
*Protein Desolvation*: Remove a solvation layer around your
protein.
-
*Comments:*
-
*User Support:*
-
Laboratory of Biological Physics <http://fisbio.fcfrp.usp.br/>
-
*Quotas:*
- "You can use tools developed at our laboratory and by our colaborators
for free. You just need to sign up to the server using your academic
e-mail."
-
*Sponsor(s):*
-
Laboratory of Biological Physics <http://fisbio.fcfrp.usp.br/>, part
of the Faculty of Pharmaceutical Sciences of Ribeirão Preto
(FCFRP)<http://www.fcfrp.usp.br/> at
the University of São Paulo (USP) <http://www.usp.br/>.
And, while I'm here, there are also a couple of other public sites that
feature proteomics prominently:
1. Galaxy-P <http://wiki.galaxyproject.org/PublicGalaxyServers#Galaxy-P>
2. GWIPS-vi <http://wiki.galaxyproject.org/PublicGalaxyServers#GWIPS-viz>
z
3. SymD <http://wiki.galaxyproject.org/PublicGalaxyServers#SymD> (not up
currently)
Hope this interesting. If it isn't, please let me know.
Thanks,
Dave C
--
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
http://wiki.galaxyproject.org/
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