Hello all,
There was something buries in the October Galaxy Update newsletter that
just went out that might be of interest to this group. One of the new
public Galaxy servers has several proteomics tools on it:
USP-FCFRP
[image: Laboratory of Biological Physics at
USP-FCFRP]<http://fisbio.fcfrp.usp.br:8080/>
-
*Link:*
-
Laboratory of Biological Physics at
USP-FCFRP<http://fisbio.fcfrp.usp.br:8080/>
-
*Domain/Purpose:*
- Summary of the currently available tools:
-
*ProtPred-GROMACS*: *Ab initio* protein structure prediction
framework which uses evolutionary algorithms to optimize objective
functions such as potential energy, number of hydrogen bonds
and solvent
accessible surface area.
-
2PG: Faster and simpler algorithm in which one objective
function is optimized
3PG: A more robust approach in which multiple objective
functions are optimized at the same time
*Protein Validation*: Check the integrity of a PDB file
*Protein Desolvation*: Remove a solvation layer around your
protein.
-
*Comments:*
-
*User Support:*
-
Laboratory of Biological Physics <http://fisbio.fcfrp.usp.br/>
-
*Quotas:*
- "You can use tools developed at our laboratory and by our colaborators
for free. You just need to sign up to the server using your academic
e-mail."
-
*Sponsor(s):*
-
Laboratory of Biological Physics <http://fisbio.fcfrp.usp.br/>, part
of the Faculty of Pharmaceutical Sciences of Ribeirão Preto
(FCFRP)<http://www.fcfrp.usp.br/> at
the University of São Paulo (USP) <http://www.usp.br/>.
And, while I'm here, there are also a couple of other public sites that
feature proteomics prominently:
1. Galaxy-P <http://wiki.galaxyproject.org/PublicGalaxyServers#Galaxy-P>
2. GWIPS-vi <http://wiki.galaxyproject.org/PublicGalaxyServers#GWIPS-viz>
z
3. SymD <http://wiki.galaxyproject.org/PublicGalaxyServers#SymD> (not up
currently)
Hope this interesting. If it isn't, please let me know.
Thanks,
Dave C
--
http://galaxyproject.org/http://getgalaxy.org/http://usegalaxy.org/http://wiki.galaxyproject.org/