Hi Galaxy-P,
I would like to package some tools for the toolshed and include them in the Galaxy-P github repo. The tools are:
- percolator and pout2mzid
- hardklor/kronik
- msstitch (aka my own tool)
And maybe some isobaric protein quant R script, and/or updates to MSGF+.
Anyway, I have poked around a little and have no problems creating and testing tools. However the toolshed syntax is a bit confusing. I understand I have to specify a package definition (tool_dependencies.xml) which installs the tool. And then the tool itself, which seems easy enough.
My questions about this:
- Is there any doc on the toolshed XML that defines how you install your binaries? I am planning to build from source, since percolator has binaries for different linuxes. (If it is not possible to specify which one of those to use.)
- what is in the admin-scripts directory? Static data?
Hoping to submit pull requests soon!
cheers,
—
Jorrit Boekel
Proteomics systems developer
BILS / Lehtiö lab
Scilifelab Stockholm, Sweden
