details: http://www.bx.psu.edu/hg/galaxy/rev/9f7a2a3be0e7
changeset: 3127:9f7a2a3be0e7
user: guru
date: Mon Nov 30 11:59:54 2009 -0500
description:
Fixed a bug in 'fetch closest features' tool.
diffstat:
tools/new_operations/flanking_features.py | 5 ++---
1 files changed, 2 insertions(+), 3 deletions(-)
diffs (22 lines):
diff -r 71b779fde315 -r 9f7a2a3be0e7 tools/new_operations/flanking_features.py
--- a/tools/new_operations/flanking_features.py Mon Nov 30 11:56:58 2009 -0500
+++ b/tools/new_operations/flanking_features.py Mon Nov 30 11:59:54 2009 -0500
@@ -121,7 +121,7 @@
map(outfields.append, result_down[-1].other) #The last element of result_down will be the closest element to the given interval
yield outfields
- if either:
+ if either and (result_up or result_down):
if result_up and result_down:
if abs(start - int(result_up[res_ind].end)) <= abs(end - int(result_down[-1].start)):
map(outfields.append, result_up[res_ind].other)
@@ -131,8 +131,7 @@
map(outfields.append, result_up[res_ind].other)
elif result_down:
map(outfields.append, result_down[-1].other) #The last element of result_down will be the closest element to the given interval
- yield outfields
-
+ yield outfields
def main():
options, args = doc_optparse.parse( __doc__ )
The "Select a reference genome" popup in the NGS mapping section is
empty for the Bowtie and BWA tools on my local Galaxy install (latest
release). How can I populate it?
Dean A. Snyder
Senior Programmer/Analyst
Center for Inherited Disease Research (CIDR)
Johns Hopkins School of Medicine
Bayview Research Campus
333 Cassell Dr, Triad Bldg, Suite 2000
Baltimore, MD 21224
www.cidr.jhmi.edu
cell:717 668-3048 office:410-550-4629