galaxy-dev February 2021

galaxy-dev@lists.galaxyproject.org

7 participants
3 discussions

[GSoC2021] [OGI] Participation in Google Summer of Code 2021
by Robin Haw 15 Mar '22

15 Mar '22

Dear All, The Open Genome Informatics team serves as an “umbrella" organization to support the efforts of many open-access open-source bioinformatics projects for <https://summerofcode.withgoogle.com/> Google Summer of Code (GSoC<https://summerofcode.withgoogle.com/>). Among this list of projects are Reactome and GMOD and its software projects -- JBrowse; Galaxy; WormBase; and others. Call for 2021 Project Ideas and Mentors: We are seeking project ideas to post and attract talented students to this year’s Summer of Code competition. If you have a project idea for which you would like to mentor a student, please contact Robin Haw, Marc Gillespie, and Scott Cain (emails above). You can also submit your ideas here<http://gmod.org/wiki/GSOC_Project_Ideas_2021>. For more information please refer to the Open Genome Informatics page on the GMOD.org website<http://gmod.org/wiki/GSoC><http://gmod.org/wiki/GSoC#Google_Summer_of_Code_2020>. The mentoring organization application deadline with GSoC is February 19th at 2 pm EST. So, if you are interested in taking part with the team please let us know as soon as possible. Please forward this to others who might be interested in taking part. If you have any questions please let us know. Thanks, Robin, Marc, and Scott.

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Ansible Galaxy using root user for role installation
by Sandra Maksimovic 17 Feb '21

17 Feb '21

Hi there, Would anyone happen to know why Ansible tries to connect to a remote host (CentOS 7) using 'root' during Galaxy role installation? My playbook has been configured to connect to the remote host using a different user account via SSH, however, the role installation is not honoring this for some reason and continues to use root. The remote host has had SSH root login disabled for security reasons and setting various galaxy user/privsep/become/remote user variables in the group_vars has not had any effect. TASK [galaxyproject.galaxy : Create galaxy_root] * fatal: [server_name]: UNREACHABLE! => {"changed": false, "msg": "Invalid/incorrect password: Permission denied, please try again.\r\nPermission denied, please try again.\r\nroot@server_name: Permission denied (publickey,password).", "unreachable": true} Thanks, Sandra Disclaimer This e-mail and any attachments to it (the "Communication") are, unless otherwise stated, confidential, may contain copyright material and is for the use only of the intended recipient. If you receive the Communication in error, please notify the sender immediately by return e-mail, delete the Communication and the return e-mail, and do not read, copy, retransmit or otherwise deal with it. Any views expressed in the Communication are those of the individual sender only, unless expressly stated to be those of Murdoch Children’s Research Institute (MCRI) ABN 21 006 566 972 or any of its related entities. MCRI does not accept liability in connection with the integrity of or errors in the Communication, computer virus, data corruption, interference or delay arising from or in respect of the Communication.

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February 2021 Galaxy Newsletter
by Beatriz Serrano-Solano 08 Feb '21

08 Feb '21

Hi Galaxy Community! The *February 2021 Newsletter <https://galaxyproject.org/news/2021-02-galaxy-update/#event-news>* is out. This time we announce that *GCC2021 goes virtual*, unfortunately. However, this will make it more affordable, and globally accessible to everyone. Other updates include: - *Event news <https://galaxyproject.org/news/2021-02-galaxy-update/#event-news>*: training, webinars, CoFests, conferences... - *Platform news <https://galaxyproject.org/news/2021-02-galaxy-update/#galaxy-platforms-news>*: ATACgraph, corGAT on Laniakea, UseGalaxy.eu - *9 Blog posts <https://galaxyproject.org/news/2021-02-galaxy-update/#galactic-blog-activity>* - *Training material and doc updates <https://galaxyproject.org/news/2021-02-galaxy-update/#doc-hub-and-training-…>*: Admin training, scRNA-seq, videos, new tutorials... - *Publications <https://galaxyproject.org/news/2021-02-galaxy-update/#publications>*: 8 highlights - *Who’s hiring?* <https://galaxyproject.org/news/2021-02-galaxy-update/#whos-hiring> more than 12 open positions - *New releases <https://galaxyproject.org/news/2021-02-galaxy-update/#releases>* - *Other news <https://galaxyproject.org/news/2021-02-galaxy-update/#other-news>* If you have anything to include to next month’s newsletter, then please send it to outreach(a)galaxyproject.org. Thanks for reading, Dave C and Bea

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galaxy-dev February 2021