On 09/03/10 15:42, Chris Cole wrote:
> On 09/03/10 14:53, Nate Coraor wrote:
>> Chris Cole wrote:
>>> Anyone got any ideas on this?
>>> It's still not working (following the most recent updates) and we've
>>> got some NGS data to import into Galaxy.
>> Hi Chris,
>> To use this feature, the contents of library_import_dir should
>> themselves be directories (or symlinks to the same). Selecting that
>> directory from the dropdown in the library upload form will then import
>> the contents of those directories.
> Ah, right. That's not clear in the docs.
> How come it works with locally symlinked files, then?
Just checked it again (sorry I shouldn't have sent the previous email)
with a directory and it still isn't working.
www-galaxy@ge-002: tmp> cd ~/data_import/
www-galaxy@ge-002: data_import> ls
www-galaxy@ge-002: data_import> ln -s /homes/pschofield/data/TOH
www-galaxy@ge-002: data_import> ls TOH/
0min_1.txt 30m_1.txt 60min_1.txt Cd_inuc_1.txt Cmono_1.txt
Dd_inuc_1.txt Dmono_1.txt processed
0min_2.txt 30m_2.txt 60min_2.txt Cd_inuc_2.txt Cmono_2.txt
www-galaxy@ge-002: data_import> ls -l
-rw-r--r-- 1 www-galaxy barton 142 Mar 9 14:14 README
lrwxrwxrwx 1 www-galaxy barton 26 Mar 9 15:59 TOH ->
I got the TOH option in the 'Upload directory of files', which I
selected, but the upload failed. Again, this is the error I get when
selecting one of the filenames in the dataset:
Traceback (most recent call last): File
"/homes/www-galaxy/galaxy_devel/tools/data_source/upload.py", line 326,
in __main__() File
"/homes/www-galaxy/galaxy_devel/tools/data_source/upload.py", line 318,
in __main__ add_file( dataset,
Thanks for help.