June 2019 - galaxy-dev - lists.galaxyproject.org

by Nancy Ide

I get this error when trying to run "Plot confusion matrix, precision, recall and ROC and AUC curves": > CondaError: CondaHTTPError: HTTP 404 NOT FOUND for url <https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-7.3.0-hdf63c60_... <https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-7.3.0-hdf63c60_...>> as the file libgcc-ng-7.3.0-hdf63c60_0.tar.bz2 does not exist in https://conda.anaconda.org/conda-forge/linux-64/ <https://conda.anaconda.org/conda-forge/linux-64/> Please help! Thanks ----------------------------------------------------- Nancy Ide Professor of Computer Science Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide(a)cs.vassar.edu http://www.cs.vassar.edu/~ide -----------------------------------------------------

2 months, 1 week

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Can't upload xlsx data from Firefox Quantum?

by Steven Shen

Hey all, In my Firefox Quantum 67.0.4，I found usegalaxy.org can't recognize the loacal upload xlsx file, but all goes well in Google Chrome. [image: 图片.png] So how could I fixed it? Thank you. Steven

2 months, 2 weeks

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July Galaxy News: GCC2019 is next week

by Dave Clements

The July 2019 Galactic News is out! https://galaxyproject.org/news/2019-07-galaxy-update/ * GCC2019! * Plus 17 other upcoming events in the next 90 days * 153 new publications, great resources lead to great insight. * Galaxy Platform News for Galaxy Europe, Galaxy Australia, and OpenMinTeD * At least 6 Open positions in five countries on two continents. * Updates to training materials and documentation. * New tools and new releases. * And some other news too. Hope to see you in Freiburg next week, Dave C. Mo, and the Galaxy Community -- https://galaxyproject.org/gcc2019/ https://galaxyproject.org/ https://usegalaxy.org/

2 months, 2 weeks

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Error

by Nancy Ide

I get this error when trying to run "Plot confusion matrix, precision, recall and ROC and AUC curves": > CondaError: CondaHTTPError: HTTP 404 NOT FOUND for url <https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-7.3.0-hdf63c60_... <https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-7.3.0-hdf63c60_...>> as the file libgcc-ng-7.3.0-hdf63c60_0.tar.bz2 does not exist in https://conda.anaconda.org/conda-forge/linux-64/ <https://conda.anaconda.org/conda-forge/linux-64/> Please help! Thanks ----------------------------------------------------- Nancy Ide Professor of Computer Science Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide(a)cs.vassar.edu http://www.cs.vassar.edu/~ide -----------------------------------------------------

2 months, 3 weeks

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New to supporting Galaxy (local deployment) seeking help related to upload problem and log file locations

by zemay＠attain.com

I've recently been asked to support a local Galaxy deployment. As I am new to the software, I'm having a hard time tracking down logs and honestly understanding how the system works. The actual problem is the scientist in question is not able to upload files. The only upload feature I noticed running on the server was an sftp-server, so I restarted that, but it doesn't appear to have fixed anything. Which lead me down the path of tracking down log files to help me troubleshoot, but I am unable to track those down. I have looked through several of the previous discussions regarding uploading, and have not been able to find the answer to my question. Any help would be appreciated. thanks Zack

2 months, 3 weeks

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set metadata resubmission

by Matthias Bernt

Dear list, I'm just wondering if there is anything special about metadata setting jobs that might lead to problems with job resubmission. For normal jobs resubmission works on our UNIVA cluster, but for setting metadata this seems to be not the case. Best, Matthias -- ------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt(a)ufz.de, www.ufz.de Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 1269, Fax +49 341 235 1468 (optional) max.mustermann(a)ufz.de, www.ufz.de Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Georg Teutsch Administrative Geschäftsführerin/Administrative Managing Director: Dr. Sabine König

3 months, 1 week

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June 2019 Galactic News: GCC Deadlines this week and next

by Dave Clements

Hello all, The June 2019 Galactic News is here! This is a summary of what is going on in the Galaxy community: https://galaxyproject.org/news/2019-06-galaxy-update/ - GCC2019: - **Advance registration ends 7 June** - **Poster and Demo Abstract Submission deadline: 10 June** - Conference schedule is online - Plus 13 other upcoming events in the next 90 days - 150 new publications, great resources lead to great insight. - Galaxy Platform News: New platforms for tranSMART, antibiotic resistance, phylogeny, long-read data, mass spectrometry Imaging, and Rice! - A new entry to The Galactic Blog on Galaxy cloud bursting - At least 8 Open positions in five countries on two continents. - Updates to training materials and documentation. - New tools and new releases. - And some cool other news too: - The new Galaxy Services Status Web Site - Black Duck Open Hub updates it's Galaxy project stats and we are doing great. See you in a month, Dave C, Mo, and the Galaxy Community -- https://galaxyproject.org/gcc2019/ https://galaxyproject.org/ https://usegalaxy.org/

3 months, 2 weeks

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galaxy-dev June 2019