New to supporting Galaxy (local deployment) seeking help related to upload problem and log file locations
by zemay＠attain.com
I've recently been asked to support a local Galaxy deployment. As I am new to the software, I'm having a hard time tracking down logs and honestly understanding how the system works.
The actual problem is the scientist in question is not able to upload files. The only upload feature I noticed running on the server was an sftp-server, so I restarted that, but it doesn't appear to have fixed anything. Which lead me down the path of tracking down log files to help me troubleshoot, but I am unable to track those down.
I have looked through several of the previous discussions regarding uploading, and have not been able to find the answer to my question.
Any help would be appreciated.
thanks
Zack
2 years, 11 months
set metadata resubmission
by Matthias Bernt
Dear list,
I'm just wondering if there is anything special about metadata setting
jobs that might lead to problems with job resubmission.
For normal jobs resubmission works on our UNIVA cluster, but for setting
metadata this seems to be not the case.
Best,
Matthias
--
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Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.bernt(a)ufz.de, www.ufz.de
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 1269, Fax +49 341 235 1468 (optional)
max.mustermann(a)ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Georg Teutsch
Administrative Geschäftsführerin/Administrative Managing Director:
Dr. Sabine König
2 years, 11 months
June 2019 Galactic News: GCC Deadlines this week and next
by Dave Clements
Hello all,
The June 2019 Galactic News is here! This is a summary of what is
going on in the Galaxy community:
https://galaxyproject.org/news/2019-06-galaxy-update/
- GCC2019:
- **Advance registration ends 7 June**
- **Poster and Demo Abstract Submission deadline: 10 June**
- Conference schedule is online
- Plus 13 other upcoming events in the next 90 days
- 150 new publications, great resources lead to great insight.
- Galaxy Platform News: New platforms for tranSMART, antibiotic resistance,
phylogeny, long-read data, mass spectrometry Imaging, and Rice!
- A new entry to The Galactic Blog on Galaxy cloud bursting
- At least 8 Open positions in five countries on two continents.
- Updates to training materials and documentation.
- New tools and new releases.
- And some cool other news too:
- The new Galaxy Services Status Web Site
- Black Duck Open Hub updates it's Galaxy project stats and we are
doing great.
See you in a month,
Dave C, Mo, and the Galaxy Community
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https://galaxyproject.org/gcc2019/
https://galaxyproject.org/
https://usegalaxy.org/
2 years, 11 months
