Hi, I installed a local instance of galaxy browser on my local machine using the steps in:
http://wiki.galaxyproject.org/Admin/Get%20Galaxy
I tried both the default (hg update default) and stable versions (hg update stable)
but the current website has different features on the left panel then the local instance that I downloaded. Specifically I want to use the SnpEff feature under the NGS toolbox Beta on the left panel of the website. But I can't find this feature on the local instance is there anyway to install a local instance of the current version of the website?
Thanks Best Regards Hamdi Kitapci
Hamid,
Read the information here: http://snpeff.sourceforge.net/SnpEff_manual.html#galaxy
-- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences
Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/
University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu
On Wed, Aug 28, 2013 at 2:16 PM, Tevfik Hamdi Kitapci tkitapci@usc.edu wrote:
Hi, I installed a local instance of galaxy browser on my local machine using the steps in:
http://wiki.galaxyproject.org/Admin/Get%20Galaxy
I tried both the default (hg update default) and stable versions (hg update stable)
but the current website has different features on the left panel then the local instance that I downloaded. Specifically I want to use the SnpEff feature under the NGS toolbox Beta on the left panel of the website. But I can't find this feature on the local instance is there anyway to install a local instance of the current version of the website?
Thanks Best Regards Hamdi Kitapci
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Hi Tevfik,
Adam is right, but even easier assuming it goes smoothly, you should be able to install an updated version 3.3 of JJ's previous 3.2 wrapper via the Galaxy admin interface - test toolshed; SNP Analysis; snpeff_3_3_wrapperhttp://testtoolshed.g2.bx.psu.edu/repository/browse_repositories_in_category?sort=name&operation=view_or_manage_repository&id=1cea2cd3f63ea2a9 owned by fubar.
Please let me know if it works for you?
On Thu, Aug 29, 2013 at 4:42 PM, Adam Brenner aebrenne@uci.edu wrote:
Hamid,
Read the information here: http://snpeff.sourceforge.net/SnpEff_manual.html#galaxy
-- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences
Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/
University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu
On Wed, Aug 28, 2013 at 2:16 PM, Tevfik Hamdi Kitapci tkitapci@usc.edu wrote:
Hi, I installed a local instance of galaxy browser on my local machine using
the
steps in:
http://wiki.galaxyproject.org/Admin/Get%20Galaxy
I tried both the default (hg update default) and stable versions (hg
update
stable)
but the current website has different features on the left panel then the local instance that I downloaded. Specifically I want to use the SnpEff feature under the NGS toolbox Beta on the left panel of the website. But
I
can't find this feature on the local instance is there anyway to install
a
local instance of the current version of the website?
Thanks Best Regards Hamdi Kitapci
galaxy-dev@lists.galaxyproject.org
-
Adam Brenner -
Ross -
Tevfik Hamdi Kitapci