Hi all,
after the February 2014 galaxy update I'm experiencing errors in Galaxy Reports.
It only occurs when I'm trying to see which jobs were ran at a specific date (e.g. I can see how many jobs were ran today, but when I click on the number to see which ones it returns the following error):
URL: http://localhost:9001/jobs/specified_date_handler?webapp=reports&specifi... Module paste.exceptions.errormiddleware:*144* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
app_iter *=* self*.*application*(*environ*,* sr_checker*)* Module paste.debug.prints:*106* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
environ*,* self*.*app*)* Module paste.wsgilib:*543* in intercept_output
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*84* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*633* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*132* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*handle_request*(* environ*,* start_response *)* Module galaxy.web.framework.base:*190* in handle_request
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
body *=* method*(* trans*,* ****kwargs *)* Module galaxy.webapps.reports.controllers.jobs:*177* in specified_date_handler
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*specified_date_list_grid*(* trans*,* ****kwd *)* Module galaxy.web.framework.helpers.grids:*296* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
kwargs*=*kwargs *)* Module galaxy.web.framework:*1184* in fill_template
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*fill_template_mako*(* filename*,* ****kwargs *)* Module galaxy.web.framework:*1199* in fill_template_mako
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* template*.*render*(* ****data *)* Module mako.template:*296* in render
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data*)* Module mako.runtime:*660* in _render
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
****_kwargs_for_callable*(*callable_*,* data*)**)* Module mako.runtime:*692* in _render_context
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
_exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=*kwargs*)* Module mako.runtime:*718* in _exec_template
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
callable_*(*context*,* ***args*,* ****kwargs*)* Module _base_mako:*45* in render_body
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*next*.*body*(**)**)**)* Module _grid_base_mako:*134* in render_body
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*self*.*load*(**)**)**)* Module _grid_base_mako:*108* in render_load
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
self*.*grid_javascripts*(**)* Module _grid_base_mako:*517* in render_grid_javascripts
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*h*.*to_json_string*(*self*.*grid_config*)**)**)* Module json:*231* in dumps
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* _default_encoder*.*encode*(*obj*)* Module json.encoder:*200* in encode
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
chunks *=* self*.*iterencode*(*o*,* _one_shot*=*True*)* Module json.encoder:*263* in iterencode
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* _iterencode*(*o*,* *0**)* Module json.encoder:*177* in default
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*raise* TypeError*(*repr*(*o*)* *+* " is not JSON serializable"*)* *TypeError: datetime.datetime(2014, 2, 13, 12, 12, 24, 966618) is not JSON serializable*
Bests, Nikos
Hi Nikos,
Thank you so much for your report. This issue should be fixed now. Please update your revision and try again.
Thanks, Sam
On Thu, Feb 13, 2014 at 7:52 AM, Nikos Sidiropoulos nikos.sidiro@gmail.comwrote:
Hi all,
after the February 2014 galaxy update I'm experiencing errors in Galaxy Reports.
It only occurs when I'm trying to see which jobs were ran at a specific date (e.g. I can see how many jobs were ran today, but when I click on the number to see which ones it returns the following error):
URL: http://localhost:9001/jobs/specified_date_handler?webapp=reports&specifi... Module paste.exceptions.errormiddleware:*144* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
app_iter *=* self*.*application*(*environ*,* sr_checker*)* Module paste.debug.prints:*106* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
environ*,* self*.*app*)* Module paste.wsgilib:*543* in intercept_output
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*84* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*633* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*132* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*handle_request*(* environ*,* start_response *)* Module galaxy.web.framework.base:*190* in handle_request
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
body *=* method*(* trans*,* ****kwargs *)* Module galaxy.webapps.reports.controllers.jobs:*177* in specified_date_handler
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*specified_date_list_grid*(* trans*,* ****kwd *)* Module galaxy.web.framework.helpers.grids:*296* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
kwargs*=*kwargs *)* Module galaxy.web.framework:*1184* in fill_template
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*fill_template_mako*(* filename*,* ****kwargs *)* Module galaxy.web.framework:*1199* in fill_template_mako
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* template*.*render*(* ****data *)* Module mako.template:*296* in render
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data*)* Module mako.runtime:*660* in _render
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
****_kwargs_for_callable*(*callable_*,* data*)**)* Module mako.runtime:*692* in _render_context
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
_exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=*kwargs *)* Module mako.runtime:*718* in _exec_template
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
callable_*(*context*,* ***args*,* ****kwargs*)* Module _base_mako:*45* in render_body
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*next*.*body*(**)**)**)* Module _grid_base_mako:*134* in render_body
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*self*.*load*(**)**)**)* Module _grid_base_mako:*108* in render_load
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
self*.*grid_javascripts*(**)* Module _grid_base_mako:*517* in render_grid_javascripts
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*h*.*to_json_string*(*self*.*grid_config*)**)**)* Module json:*231* in dumps
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* _default_encoder*.*encode*(*obj*)* Module json.encoder:*200* in encode
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
chunks *=* self*.*iterencode*(*o*,* _one_shot*=*True*)* Module json.encoder:*263* in iterencode
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* _iterencode*(*o*,* *0**)* Module json.encoder:*177* in default
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*raise* TypeError*(*repr*(*o*)* *+* " is not JSON serializable"*)* *TypeError: datetime.datetime(2014, 2, 13, 12, 12, 24, 966618) is not JSON serializable*
Bests, Nikos
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Sam,
thank you for the quick reply but I can't seem to find the revision, or maybe don't know how to pull it.
I tried to check galaxy-dist on BitBucket but couldn't find any updates related to Galaxy Reports.
Bests, Nikos
2014-02-13 17:35 GMT+01:00 sam guerler aysam.guerler@gmail.com:
Hi Nikos,
Thank you so much for your report. This issue should be fixed now. Please update your revision and try again.
Thanks, Sam
On Thu, Feb 13, 2014 at 7:52 AM, Nikos Sidiropoulos < nikos.sidiro@gmail.com> wrote:
Hi all,
after the February 2014 galaxy update I'm experiencing errors in Galaxy Reports.
It only occurs when I'm trying to see which jobs were ran at a specific date (e.g. I can see how many jobs were ran today, but when I click on the number to see which ones it returns the following error):
URL: http://localhost:9001/jobs/specified_date_handler?webapp=reports&specifi... Module paste.exceptions.errormiddleware:*144* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
app_iter *=* self*.*application*(*environ*,* sr_checker*)* Module paste.debug.prints:*106* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
environ*,* self*.*app*)* Module paste.wsgilib:*543* in intercept_output
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*84* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*633* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*132* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*handle_request*(* environ*,* start_response *)* Module galaxy.web.framework.base:*190* in handle_request
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
body *=* method*(* trans*,* ****kwargs *)* Module galaxy.webapps.reports.controllers.jobs:*177* in specified_date_handler
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*specified_date_list_grid*(* trans*,* ****kwd *)* Module galaxy.web.framework.helpers.grids:*296* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
kwargs*=*kwargs *)* Module galaxy.web.framework:*1184* in fill_template
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*fill_template_mako*(* filename*,* ****kwargs *)* Module galaxy.web.framework:*1199* in fill_template_mako
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* template*.*render*(* ****data *)* Module mako.template:*296* in render
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data*)* Module mako.runtime:*660* in _render
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
****_kwargs_for_callable*(*callable_*,* data*)**)* Module mako.runtime:*692* in _render_context
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
_exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=*kwargs *)* Module mako.runtime:*718* in _exec_template
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
callable_*(*context*,* ***args*,* ****kwargs*)* Module _base_mako:*45* in render_body
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*next*.*body*(**)**)**)* Module _grid_base_mako:*134* in render_body
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*self*.*load*(**)**)**)* Module _grid_base_mako:*108* in render_load
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
self*.*grid_javascripts*(**)* Module _grid_base_mako:*517* in render_grid_javascripts
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*h*.*to_json_string*(*self*.*grid_config*)**)**)* Module json:*231* in dumps
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* _default_encoder*.*encode*(*obj*)* Module json.encoder:*200* in encode
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
chunks *=* self*.*iterencode*(*o*,* _one_shot*=*True*)* Module json.encoder:*263* in iterencode
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* _iterencode*(*o*,* *0**)* Module json.encoder:*177* in default
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*raise* TypeError*(*repr*(*o*)* *+* " is not JSON serializable"*)* *TypeError: datetime.datetime(2014, 2, 13, 12, 12, 24, 966618) is not JSON serializable*
Bests, Nikos
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi,
this has been resolved in galaxy-central repo (not dist). You can apply the patch manualy, it is less than one-liner.
https://bitbucket.org/galaxy/galaxy-central/commits/3691fd3e12ef8160ae993cef...
Martin
On Fri, Feb 14, 2014 at 1:28 PM, Nikos Sidiropoulos nikos.sidiro@gmail.comwrote:
Hi Sam,
thank you for the quick reply but I can't seem to find the revision, or maybe don't know how to pull it.
I tried to check galaxy-dist on BitBucket but couldn't find any updates related to Galaxy Reports.
Bests, Nikos
2014-02-13 17:35 GMT+01:00 sam guerler aysam.guerler@gmail.com:
Hi Nikos,
Thank you so much for your report. This issue should be fixed now. Please update your revision and try again.
Thanks, Sam
On Thu, Feb 13, 2014 at 7:52 AM, Nikos Sidiropoulos < nikos.sidiro@gmail.com> wrote:
Hi all,
after the February 2014 galaxy update I'm experiencing errors in Galaxy Reports.
It only occurs when I'm trying to see which jobs were ran at a specific date (e.g. I can see how many jobs were ran today, but when I click on the number to see which ones it returns the following error):
URL: http://localhost:9001/jobs/specified_date_handler?webapp=reports&specifi... Module paste.exceptions.errormiddleware:*144* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
app_iter *=* self*.*application*(*environ*,* sr_checker*)* Module paste.debug.prints:*106* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
environ*,* self*.*app*)* Module paste.wsgilib:*543* in intercept_output
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*84* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*633* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*132* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*handle_request*(* environ*,* start_response *)* Module galaxy.web.framework.base:*190* in handle_request
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
body *=* method*(* trans*,* ****kwargs *)* Module galaxy.webapps.reports.controllers.jobs:*177* in specified_date_handler
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*specified_date_list_grid*(* trans*,* ****kwd *)* Module galaxy.web.framework.helpers.grids:*296* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
kwargs*=*kwargs *)* Module galaxy.web.framework:*1184* in fill_template
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*fill_template_mako*(* filename*,* ****kwargs *)* Module galaxy.web.framework:*1199* in fill_template_mako
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* template*.*render*(* ****data *)* Module mako.template:*296* in render
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data*)* Module mako.runtime:*660* in _render
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
****_kwargs_for_callable*(*callable_*,* data*)**)* Module mako.runtime:*692* in _render_context
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
_exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=*kwargs *)* Module mako.runtime:*718* in _exec_template
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
callable_*(*context*,* ***args*,* ****kwargs*)* Module _base_mako:*45* in render_body
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*next*.*body*(**)**)**)* Module _grid_base_mako:*134* in render_body
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*self*.*load*(**)**)**)* Module _grid_base_mako:*108* in render_load
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
self*.*grid_javascripts*(**)* Module _grid_base_mako:*517* in render_grid_javascripts
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*h*.*to_json_string*(*self*.*grid_config*)**)**)* Module json:*231* in dumps
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* _default_encoder*.*encode*(*obj*)* Module json.encoder:*200* in encode
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
chunks *=* self*.*iterencode*(*o*,* _one_shot*=*True*)* Module json.encoder:*263* in iterencode
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* _iterencode*(*o*,* *0**)* Module json.encoder:*177* in default
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*raise* TypeError*(*repr*(*o*)* *+* " is not JSON serializable"*)* *TypeError: datetime.datetime(2014, 2, 13, 12, 12, 24, 966618) is not JSON serializable*
Bests, Nikos
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Thanks so much Martin!
2014-02-14 19:32 GMT+01:00 Martin Čech marten@bx.psu.edu:
Hi,
this has been resolved in galaxy-central repo (not dist). You can apply the patch manualy, it is less than one-liner.
https://bitbucket.org/galaxy/galaxy-central/commits/3691fd3e12ef8160ae993cef...
Martin
On Fri, Feb 14, 2014 at 1:28 PM, Nikos Sidiropoulos < nikos.sidiro@gmail.com> wrote:
Hi Sam,
thank you for the quick reply but I can't seem to find the revision, or maybe don't know how to pull it.
I tried to check galaxy-dist on BitBucket but couldn't find any updates related to Galaxy Reports.
Bests, Nikos
2014-02-13 17:35 GMT+01:00 sam guerler aysam.guerler@gmail.com:
Hi Nikos,
Thank you so much for your report. This issue should be fixed now. Please update your revision and try again.
Thanks, Sam
On Thu, Feb 13, 2014 at 7:52 AM, Nikos Sidiropoulos < nikos.sidiro@gmail.com> wrote:
Hi all,
after the February 2014 galaxy update I'm experiencing errors in Galaxy Reports.
It only occurs when I'm trying to see which jobs were ran at a specific date (e.g. I can see how many jobs were ran today, but when I click on the number to see which ones it returns the following error):
URL: http://localhost:9001/jobs/specified_date_handler?webapp=reports&specifi... Module paste.exceptions.errormiddleware:*144* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
app_iter *=* self*.*application*(*environ*,* sr_checker*)* Module paste.debug.prints:*106* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
environ*,* self*.*app*)* Module paste.wsgilib:*543* in intercept_output
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*84* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*633* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*132* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*handle_request*(* environ*,* start_response *)* Module galaxy.web.framework.base:*190* in handle_request
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
body *=* method*(* trans*,* ****kwargs *)* Module galaxy.webapps.reports.controllers.jobs:*177* in specified_date_handler
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*specified_date_list_grid*(* trans*,* ****kwd *)* Module galaxy.web.framework.helpers.grids:*296* in __call__
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
kwargs*=*kwargs *)* Module galaxy.web.framework:*1184* in fill_template
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* self*.*fill_template_mako*(* filename*,* ****kwargs *)* Module galaxy.web.framework:*1199* in fill_template_mako
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* template*.*render*(* ****data *)* Module mako.template:*296* in render
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data *)* Module mako.runtime:*660* in _render
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
****_kwargs_for_callable*(*callable_*,* data*)**)* Module mako.runtime:*692* in _render_context
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
_exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=* kwargs*)* Module mako.runtime:*718* in _exec_template
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
callable_*(*context*,* ***args*,* ****kwargs*)* Module _base_mako:*45* in render_body
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*next*.*body*(**)**)**)* Module _grid_base_mako:*134* in render_body
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*self*.*load*(**)**)**)* Module _grid_base_mako:*108* in render_load
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
self*.*grid_javascripts*(**)* Module _grid_base_mako:*517* in render_grid_javascripts
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
__M_writer*(*unicode*(*h*.*to_json_string*(*self*.*grid_config*)**)**)* Module json:*231* in dumps
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* _default_encoder*.*encode*(*obj*)* Module json.encoder:*200* in encode
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
chunks *=* self*.*iterencode*(*o*,* _one_shot*=*True*)* Module json.encoder:*263* in iterencode
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*return* _iterencode*(*o*,* *0**)* Module json.encoder:*177* in default
http://localhost:9001/jobs/specified_date_handler?webapp=reports&specified_date=2014-02-13#
*raise* TypeError*(*repr*(*o*)* *+* " is not JSON serializable"*)* *TypeError: datetime.datetime(2014, 2, 13, 12, 12, 24, 966618) is not JSON serializable*
Bests, Nikos
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