3:13 p.m.
Dear list,
Currently I get SSL certificate errors when I try to install a tool in
Galaxy. I also get the same error when I try to use the galaxy-tools
ansible role (when debugging this I thought this might be because my
local server is on http, since the error appeared seemingly when a
message was posted to the local server -- but I'm not entirely sure).
I'm also missing the "Manage installed tools" link in the admin area
(but maybe this is expected in a fresh install?).
Thanks a lot.
Best,
Matthias
This is the stack trace when I try to install through the web frontend:
141.65.27.89 - - [18/Apr/2017:14:58:19 +0000] "GET
/admin_toolshed/prepare_for_install?changeset_revisions=9ba8ebb636f4&repository_ids=d5dd1c5d2070513e&tool_shed_url=https%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F
HTTP/1.1" 500 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:52.0)
Gecko/20100101 Firefox/52.0"
Error - <class 'urllib2.URLError'>: <urlopen error [SSL:
CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:661)>
URL:
http://bioinf2-dev:8080/admin_toolshed/prepare_for_install?changeset_revi...
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/web/framework/middleware/error.py',
line 154 in __call__
app_iter = self.application(environ, sr_checker)
File
'/gpfs1/data/galaxy_server/galaxy-dev/.venv/lib/python2.7/site-packages/paste/recursive.py',
line 85 in __call__
return self.application(environ, start_response)
File
'/gpfs1/data/galaxy_server/galaxy-dev/.venv/lib/python2.7/site-packages/paste/httpexceptions.py',
line 640 in __call__
return self.application(environ, start_response)
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/web/framework/base.py',
line 134 in __call__
return self.handle_request( environ, start_response )
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/web/framework/base.py',
line 193 in handle_request
body = method( trans, **kwargs )
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/web/framework/decorators.py',
line 98 in decorator
return func( self, trans, *args, **kwargs )
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
line 1035 in prepare_for_install
raw_text = util.url_get( tool_shed_url,
password_mgr=self.app.tool_shed_registry.url_auth( tool_shed_url ),
pathspec=pathspec, params=params )
File '/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/util/__init__.py',
line 1488 in url_get
response = urlopener.open( full_url )
File
'/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 429 in open
response = self._open(req, data)
File
'/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 447 in _open
'_open', req)
File
'/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 407 in _call_chain
result = func(*args)
File
'/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 1241 in https_open
context=self._context)
File
'/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 1198 in do_open
raise URLError(err)
URLError: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate
verify failed (_ssl.c:661)>
CGI Variables
-------------
CONTENT_LENGTH: '0'
HTTP_ACCEPT:
'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8'
HTTP_ACCEPT_ENCODING: 'gzip, deflate'
HTTP_ACCEPT_LANGUAGE: 'en-US,en;q=0.5'
HTTP_CONNECTION: 'keep-alive'
HTTP_COOKIE:
'galaxysession=5d9fe20b2f75201eeee9486487f5942375617bcc89a7da2cc7e5bd9aff8a0eb130e333f3419e10fa'
HTTP_DNT: '1'
HTTP_HOST: 'bioinf2-dev:8080'
HTTP_UPGRADE_INSECURE_REQUESTS: '1'
HTTP_USER_AGENT: 'Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:52.0)
Gecko/20100101 Firefox/52.0'
PATH_INFO: '/admin_toolshed/prepare_for_install'
QUERY_STRING:
'changeset_revisions=9ba8ebb636f4&repository_ids=d5dd1c5d2070513e&tool_shed_url=https%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F'
REMOTE_ADDR: '141.65.27.89'
REQUEST_METHOD: 'GET'
SERVER_NAME: '0.0.0.0'
SERVER_PORT: '8080'
SERVER_PROTOCOL: 'HTTP/1.1'
WSGI Variables
--------------
application: <paste.recursive.RecursiveMiddleware object at
0x7f2dd8bb5190>
controller_action_key: u'web.admin_toolshed.prepare_for_install'
is_api_request: False
paste.cookies: (<SimpleCookie:
galaxysession='5d9fe20b2f75201eeee9486487f5942375617bcc89a7da2cc7e5bd9aff8a0eb130e333f3419e10fa'>,
'galaxysession=5d9fe20b2f75201eeee9486487f5942375617bcc89a7da2cc7e5bd9aff8a0eb130e333f3419e10fa')
paste.expected_exceptions: [<class
'paste.httpexceptions.HTTPException'>]
paste.httpexceptions: <paste.httpexceptions.HTTPExceptionHandler
object at 0x7f2dd8bb5110>
paste.httpserver.proxy.host: 'dummy'
paste.httpserver.proxy.scheme: 'http'
paste.httpserver.thread_pool: <paste.httpserver.ThreadPool object at
0x7f2dd875fe10>
paste.parsed_querystring: ([('changeset_revisions', '9ba8ebb636f4'),
('repository_ids', 'd5dd1c5d2070513e'), ('tool_shed_url',
'https://toolshed.g2.bx.psu.edu/')],
'changeset_revisions=9ba8ebb636f4&repository_ids=d5dd1c5d2070513e&tool_shed_url=https%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F')
paste.recursive.forward: <paste.recursive.Forwarder from />
paste.recursive.include: <paste.recursive.Includer from />
paste.recursive.include_app_iter: <paste.recursive.IncluderAppIter
from />
paste.recursive.script_name: ''
paste.throw_errors: True
request_id: '7599ea98244711e7941208002755efa5'
webob._parsed_query_vars: (GET([(u'changeset_revisions',
u'9ba8ebb636f4'), (u'repository_ids', u'd5dd1c5d2070513e'),
(u'tool_shed_url', u'https://toolshed.g2.bx.psu.edu/')]),
'changeset_revisions=9ba8ebb636f4&repository_ids=d5dd1c5d2070513e&tool_shed_url=https%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F')
wsgi process: 'Multithreaded'
------------------------------------------------------------
--
-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.bernt(a)ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------
3:39 p.m.
Hi Matthias,
this looks like your python installation does not know how to verify SSL
certificates.
Redhat have a nice section on troubleshooting that here:
https://access.redhat.com/articles/2039753
I can get your error by specifying a nonexsting cert:
mvandenb@Mariuss-MacBook-Pro:~/src/readtagger/readtagger (master)*$
SSL_CERT_FILE=/does_not_exist python ~/urllib2_test.py
https://usegalaxy.org
Traceback (most recent call last):
File "/Users/mvandenb/urllib2_test.py", line 10, in <module>
urllib2.urlopen(req)
File
"/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py",
line 154, in urlopen
return opener.open(url, data, timeout)
File
"/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py",
line 429, in open
response = self._open(req, data)
File
"/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py",
line 447, in _open
'_open', req)
File
"/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py",
line 407, in _call_chain
result = func(*args)
File
"/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py",
line 1241, in https_open
context=self._context)
File
"/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py",
line 1198, in do_open
raise URLError(err)
urllib2.URLError: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED]
certificate verify failed (_ssl.c:661)>
Hope that helps,
Marius
On 18 April 2017 at 17:13, Matthias Bernt <m.bernt(a)ufz.de> wrote:
Dear list,
Currently I get SSL certificate errors when I try to install a tool in
Galaxy. I also get the same error when I try to use the galaxy-tools
ansible role (when debugging this I thought this might be because my local
server is on http, since the error appeared seemingly when a message was
posted to the local server -- but I'm not entirely sure).
I'm also missing the "Manage installed tools" link in the admin area (but
maybe this is expected in a fresh install?).
Thanks a lot.
Best,
Matthias
This is the stack trace when I try to install through the web frontend:
141.65.27.89 - - [18/Apr/2017:14:58:19 +0000] "GET
/admin_toolshed/prepare_for_install?changeset_revisions=9ba8
ebb636f4&repository_ids=d5dd1c5d2070513e&tool_shed_url=https%3A%2F%
2Ftoolshed.g2.bx.psu.edu%2F HTTP/1.1" 500 - "-" "Mozilla/5.0 (X11;
Ubuntu; Linux x86_64; rv:52.0) Gecko/20100101 Firefox/52.0"
Error - <class 'urllib2.URLError'>: <urlopen error [SSL:
CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:661)>
URL: http://bioinf2-dev:8080/admin_toolshed/prepare_for_install?c
hangeset_revisions=9ba8ebb636f4&repository_ids=d5dd1c5d20705
13e&tool_shed_url=https%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/web/framework/middleware/error.py',
line 154 in __call__
app_iter = self.application(environ, sr_checker)
File '/gpfs1/data/galaxy_server/galaxy-dev/.venv/lib/python2.7/
site-packages/paste/recursive.py', line 85 in __call__
return self.application(environ, start_response)
File '/gpfs1/data/galaxy_server/galaxy-dev/.venv/lib/python2.7/
site-packages/paste/httpexceptions.py', line 640 in __call__
return self.application(environ, start_response)
File '/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/web/framework/base.py',
line 134 in __call__
return self.handle_request( environ, start_response )
File '/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/web/framework/base.py',
line 193 in handle_request
body = method( trans, **kwargs )
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/web/framework/decorators.py',
line 98 in decorator
return func( self, trans, *args, **kwargs )
File '/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/webapps/gal
axy/controllers/admin_toolshed.py', line 1035 in prepare_for_install
raw_text = util.url_get( tool_shed_url,
password_mgr=self.app.tool_shed_registry.url_auth(
tool_shed_url ), pathspec=pathspec, params=params )
File '/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/util/__init__.py',
line 1488 in url_get
response = urlopener.open( full_url )
File '/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 429 in open
response = self._open(req, data)
File '/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 447 in _open
'_open', req)
File '/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 407 in _call_chain
result = func(*args)
File '/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 1241 in https_open
context=self._context)
File '/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 1198 in do_open
raise URLError(err)
URLError: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate
verify failed (_ssl.c:661)>
CGI Variables
-------------
CONTENT_LENGTH: '0'
HTTP_ACCEPT: 'text/html,application/xhtml+x
ml,application/xml;q=0.9,*/*;q=0.8'
HTTP_ACCEPT_ENCODING: 'gzip, deflate'
HTTP_ACCEPT_LANGUAGE: 'en-US,en;q=0.5'
HTTP_CONNECTION: 'keep-alive'
HTTP_COOKIE: 'galaxysession=5d9fe20b2f75201
eeee9486487f5942375617bcc89a7da2cc7e5bd9aff8a0eb130e333f3419e10fa'
HTTP_DNT: '1'
HTTP_HOST: 'bioinf2-dev:8080'
HTTP_UPGRADE_INSECURE_REQUESTS: '1'
HTTP_USER_AGENT: 'Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:52.0)
Gecko/20100101 Firefox/52.0'
PATH_INFO: '/admin_toolshed/prepare_for_install'
QUERY_STRING: 'changeset_revisions=9ba8ebb63
6f4&repository_ids=d5dd1c5d2070513e&tool_shed_url=https%3A%2F%
2Ftoolshed.g2.bx.psu.edu%2F'
REMOTE_ADDR: '141.65.27.89'
REQUEST_METHOD: 'GET'
SERVER_NAME: '0.0.0.0'
SERVER_PORT: '8080'
SERVER_PROTOCOL: 'HTTP/1.1'
WSGI Variables
--------------
application: <paste.recursive.RecursiveMiddleware object at
0x7f2dd8bb5190>
controller_action_key: u'web.admin_toolshed.prepare_for_install'
is_api_request: False
paste.cookies: (<SimpleCookie: galaxysession='5d9fe20b2f75201
eeee9486487f5942375617bcc89a7da2cc7e5bd9aff8a0eb130e333f3419e10fa'>,
'galaxysession=5d9fe20b2f75201eeee9486487f5942375617bcc89a7d
a2cc7e5bd9aff8a0eb130e333f3419e10fa')
paste.expected_exceptions: [<class 'paste.httpexceptions.HTTPExce
ption'>]
paste.httpexceptions: <paste.httpexceptions.HTTPExceptionHandler object
at 0x7f2dd8bb5110>
paste.httpserver.proxy.host: 'dummy'
paste.httpserver.proxy.scheme: 'http'
paste.httpserver.thread_pool: <paste.httpserver.ThreadPool object at
0x7f2dd875fe10>
paste.parsed_querystring: ([('changeset_revisions', '9ba8ebb636f4'),
('repository_ids', 'd5dd1c5d2070513e'), ('tool_shed_url', '
https://toolshed.g2.bx.psu.edu/';)], 'changeset_revisions=9ba8ebb63
6f4&repository_ids=d5dd1c5d2070513e&tool_shed_url=https%3A%2F%
2Ftoolshed.g2.bx.psu.edu%2F')
paste.recursive.forward: <paste.recursive.Forwarder from />
paste.recursive.include: <paste.recursive.Includer from />
paste.recursive.include_app_iter: <paste.recursive.IncluderAppIter from
/>
paste.recursive.script_name: ''
paste.throw_errors: True
request_id: '7599ea98244711e7941208002755efa5'
webob._parsed_query_vars: (GET([(u'changeset_revisions',
u'9ba8ebb636f4'), (u'repository_ids', u'd5dd1c5d2070513e'),
(u'tool_shed_url', u'https://toolshed.g2.bx.psu.edu/')]),
'changeset_revisions=9ba8ebb636f4&repository_ids=d5dd1c5d207
0513e&tool_shed_url=https%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F')
wsgi process: 'Multithreaded'
------------------------------------------------------------
--
-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.bernt(a)ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig
Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------
___________________________________________________________
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4:35 p.m.
Hi Marius,
thanks a lot -- you made my day!
The solution was:
export SSL_CERT_FILE=/etc/pki/tls/certs/ca-bundle.crt
Cheers,
Matthias
On 18.04.2017 17:39, Marius van den Beek wrote:
Hi Matthias,
this looks like your python installation does not know how to verify SSL
certificates.
Redhat have a nice section on troubleshooting that here:
https://access.redhat.com/articles/2039753
I can get your error by specifying a nonexsting cert:
|mvandenb@Mariuss-MacBook-Pro:~/src/readtagger/readtagger (master)*$
SSL_CERT_FILE=/does_not_exist python ~/urllib2_test.py
https://usegalaxy.org Traceback (most recent call last): File
"/Users/mvandenb/urllib2_test.py", line 10, in <module>
urllib2.urlopen(req) File
"/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py",
line 154, in urlopen return opener.open(url, data, timeout) File
"/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py",
line 429, in open response = self._open(req, data) File
"/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py",
line 447, in _open '_open', req) File
"/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py",
line 407, in _call_chain result = func(*args) File
"/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py",
line 1241, in https_open context=self._context) File
"/usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py",
line 1198, in do_open raise URLError(err) urllib2.URLError: <urlopen
error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed
(_ssl.c:661)> |
Hope that helps,
Marius
On 18 April 2017 at 17:13, Matthias Bernt <m.bernt(a)ufz.de
<mailto:m.bernt@ufz.de>> wrote:
Dear list,
Currently I get SSL certificate errors when I try to install a tool
in Galaxy. I also get the same error when I try to use the
galaxy-tools ansible role (when debugging this I thought this might
be because my local server is on http, since the error appeared
seemingly when a message was posted to the local server -- but I'm
not entirely sure).
I'm also missing the "Manage installed tools" link in the admin area
(but maybe this is expected in a fresh install?).
Thanks a lot.
Best,
Matthias
This is the stack trace when I try to install through the web frontend:
141.65.27.89 - - [18/Apr/2017:14:58:19 +0000] "GET
/admin_toolshed/prepare_for_install?changeset_revisions=9ba8ebb636f4&repository_ids=d5dd1c5d2070513e&tool_shed_url=https%3A%2F%2Ftoolshed.g2.bx.psu.edu
<http://2Ftoolshed.g2.bx.psu.edu>%2F HTTP/1.1" 500 - "-"
"Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:52.0) Gecko/20100101
Firefox/52.0"
Error - <class 'urllib2.URLError'>: <urlopen error [SSL:
CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:661)>
URL:
http://bioinf2-dev:8080/admin_toolshed/prepare_for_install?changeset_revi...
<http://bioinf2-dev:8080/admin_toolshed/prepare_for_install?changeset_revi...
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/web/framework/middleware/error.py',
line 154 in __call__
app_iter = self.application(environ, sr_checker)
File
'/gpfs1/data/galaxy_server/galaxy-dev/.venv/lib/python2.7/site-packages/paste/recursive.py',
line 85 in __call__
return self.application(environ, start_response)
File
'/gpfs1/data/galaxy_server/galaxy-dev/.venv/lib/python2.7/site-packages/paste/httpexceptions.py',
line 640 in __call__
return self.application(environ, start_response)
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/web/framework/base.py',
line 134 in __call__
return self.handle_request( environ, start_response )
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/web/framework/base.py',
line 193 in handle_request
body = method( trans, **kwargs )
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/web/framework/decorators.py',
line 98 in decorator
return func( self, trans, *args, **kwargs )
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
line 1035 in prepare_for_install
raw_text = util.url_get( tool_shed_url,
password_mgr=self.app.tool_shed_registry.url_auth( tool_shed_url ),
pathspec=pathspec, params=params )
File
'/gpfs1/data/galaxy_server/galaxy-dev/lib/galaxy/util/__init__.py',
line 1488 in url_get
response = urlopener.open( full_url )
File
'/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 429 in open
response = self._open(req, data)
File
'/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 447 in _open
'_open', req)
File
'/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 407 in _call_chain
result = func(*args)
File
'/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 1241 in https_open
context=self._context)
File
'/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/urllib2.py',
line 1198 in do_open
raise URLError(err)
URLError: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED]
certificate verify failed (_ssl.c:661)>
CGI Variables
-------------
CONTENT_LENGTH: '0'
HTTP_ACCEPT:
'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8'
HTTP_ACCEPT_ENCODING: 'gzip, deflate'
HTTP_ACCEPT_LANGUAGE: 'en-US,en;q=0.5'
HTTP_CONNECTION: 'keep-alive'
HTTP_COOKIE:
'galaxysession=5d9fe20b2f75201eeee9486487f5942375617bcc89a7da2cc7e5bd9aff8a0eb130e333f3419e10fa'
HTTP_DNT: '1'
HTTP_HOST: 'bioinf2-dev:8080'
HTTP_UPGRADE_INSECURE_REQUESTS: '1'
HTTP_USER_AGENT: 'Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:52.0)
Gecko/20100101 Firefox/52.0'
PATH_INFO: '/admin_toolshed/prepare_for_install'
QUERY_STRING:
'changeset_revisions=9ba8ebb636f4&repository_ids=d5dd1c5d2070513e&tool_shed_url=https%3A%2F%2Ftoolshed.g2.bx.psu.edu
<http://2Ftoolshed.g2.bx.psu.edu>%2F'
REMOTE_ADDR: '141.65.27.89'
REQUEST_METHOD: 'GET'
SERVER_NAME: '0.0.0.0'
SERVER_PORT: '8080'
SERVER_PROTOCOL: 'HTTP/1.1'
WSGI Variables
--------------
application: <paste.recursive.RecursiveMiddleware object at
0x7f2dd8bb5190>
controller_action_key: u'web.admin_toolshed.prepare_for_install'
is_api_request: False
paste.cookies: (<SimpleCookie:
galaxysession='5d9fe20b2f75201eeee9486487f5942375617bcc89a7da2cc7e5bd9aff8a0eb130e333f3419e10fa'>,
'galaxysession=5d9fe20b2f75201eeee9486487f5942375617bcc89a7da2cc7e5bd9aff8a0eb130e333f3419e10fa')
paste.expected_exceptions: [<class
'paste.httpexceptions.HTTPException'>]
paste.httpexceptions: <paste.httpexceptions.HTTPExceptionHandler
object at 0x7f2dd8bb5110>
paste.httpserver.proxy.host: 'dummy'
paste.httpserver.proxy.scheme: 'http'
paste.httpserver.thread_pool: <paste.httpserver.ThreadPool object
at 0x7f2dd875fe10>
paste.parsed_querystring: ([('changeset_revisions',
'9ba8ebb636f4'), ('repository_ids', 'd5dd1c5d2070513e'),
('tool_shed_url', 'https://toolshed.g2.bx.psu.edu/')
<https://toolshed.g2.bx.psu.edu/';)>],
'changeset_revisions=9ba8ebb636f4&repository_ids=d5dd1c5d2070513e&tool_shed_url=https%3A%2F%2Ftoolshed.g2.bx.psu.edu
<http://2Ftoolshed.g2.bx.psu.edu>%2F';)
paste.recursive.forward: <paste.recursive.Forwarder from />
paste.recursive.include: <paste.recursive.Includer from />
paste.recursive.include_app_iter: <paste.recursive.IncluderAppIter
from />
paste.recursive.script_name: ''
paste.throw_errors: True
request_id: '7599ea98244711e7941208002755efa5'
webob._parsed_query_vars: (GET([(u'changeset_revisions',
u'9ba8ebb636f4'), (u'repository_ids', u'd5dd1c5d2070513e'),
(u'tool_shed_url', u'https://toolshed.g2.bx.psu.edu/';)]
<https://toolshed.g2.bx.psu.edu/')%5D>),
'changeset_revisions=9ba8ebb636f4&repository_ids=d5dd1c5d2070513e&tool_shed_url=https%3A%2F%2Ftoolshed.g2.bx.psu.edu
<http://2Ftoolshed.g2.bx.psu.edu>%2F';)
wsgi process: 'Multithreaded'
------------------------------------------------------------
--
-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296 <tel:%2B49%20341%20235%20482296>,
m.bernt(a)ufz.de <mailto:m.bernt@ufz.de>, www.ufz.de <http://www.ufz.de>
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------
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--
-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.bernt(a)ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------
1901
days inactive
1901
days old
galaxy-dev@lists.galaxyproject.org
2 comments
2 participants
participants (2)
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Marius van den Beek -
Matthias Bernt