Howdy Galaxy devs,
A quick tool release announcement to ring in the new year. The latest version of the JBrowse-in-Galaxy tool is now available! https://toolshed.g2.bx.psu.edu/view/iuc/jbrowse/7342f467507b
This tool was discussed in a lightning talk at GCC2015 but would not install nicely due to a broken dependency chain. This has since been fixed and many features added in the latest version:
* Support for dataset collections * Support for multiple contigs/genomes within the JBrowse instance * Excessive configuration options for controlling colouring of tracks * Removed interstitial, open JBrowse in the main panel with one click. * Support for translation tables other than table 1.
More details in the pull request https://github.com/galaxyproject/tools-iuc/pull/507 for the curious.
And a silly image to top it off :)
Ciao, Eric
This is amazing news. As I cannot check it right now I am wondering if it has SPARQL support? To visualise genetic content from a spraql end point.
Happy new year!
From: Eric Rasche Sent: 31 December 2015 21:46 To: N: Subject: [galaxy-dev] Tool Release Announcement: JBrowse-in-Galaxy v0.4
Howdy Galaxy devs,
A quick tool release announcement to ring in the new year. The latest version of the JBrowse-in-Galaxy tool is now available! https://toolshed.g2.bx.psu.edu/view/iuc/jbrowse/7342f467507b
This tool was discussed in a lightning talk at GCC2015 but would not install nicely due to a broken dependency chain. This has since been fixed and many features added in the latest version: • Support for dataset collections • Support for multiple contigs/genomes within the JBrowse instance • Excessive configuration options for controlling colouring of tracks • Removed interstitial, open JBrowse in the main panel with one click. • Support for translation tables other than table 1. More details in the pull request for the curious. And a silly image to top it off :)
Ciao, Eric
Hi Jasper,
No SPARQL support on the Galaxy end yet, I've added that to the todo list for v0.5 https://github.com/galaxyproject/tools-iuc/issues/508 Thanks for the suggestion!
Cheers, Eric
On 12/31/2015 06:13 PM, Jasper Koehorst wrote:
This is amazing news. As I cannot check it right now I am wondering if it has SPARQL support? To visualise genetic content from a spraql end point.
Happy new year!
*From: *Eric Rasche mailto:esr@tamu.edu *Sent: *31 December 2015 21:46 *To: *N: mailto:galaxy-dev@lists.galaxyproject.org *Subject: *[galaxy-dev] Tool Release Announcement: JBrowse-in-Galaxy v0.4
Howdy Galaxy devs,
A quick tool release announcement to ring in the new year. The latest version of the JBrowse-in-Galaxy tool is now available! https://toolshed.g2.bx.psu.edu/view/iuc/jbrowse/7342f467507b
This tool was discussed in a lightning talk at GCC2015 but would not install nicely due to a broken dependency chain. This has since been fixed and many features added in the latest version:
- Support for dataset collections
- Support for multiple contigs/genomes within the JBrowse instance
- Excessive configuration options for controlling colouring of tracks
- Removed interstitial, open JBrowse in the main panel with one click.
- Support for translation tables other than table 1.
More details in the pull request https://github.com/galaxyproject/tools-iuc/pull/507 for the curious.
And a silly image to top it off :)
cid:part3.04080701.02080403@tamu.edu
Ciao, Eric
-- Eric Rasche Programmer II
Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu mailto:esr@tamu.edu
galaxy-dev@lists.galaxyproject.org