galaxy-dev August 2008

galaxy-dev@lists.galaxyproject.org

8 participants
31 discussions

Start a nNew thread

Main is at rev 1476:77f8bf51b2ae
by Greg Von Kuster 22 Aug '08

22 Aug '08

1 0

[hg] galaxy 1477: Fix for dataset_metadata_in_file validator: al...
by greg＠scofield.bx.psu.edu 22 Aug '08

22 Aug '08

details: http://www.bx.psu.edu/hg/galaxy/rev/99e223f6a132 changeset: 1477:99e223f6a132 user: Greg Von Kuster <greg(a)bx.psu.edu> date: Fri Aug 22 11:22:44 2008 -0400 description: Fix for dataset_metadata_in_file validator: all locally cached data files that are columnar must have columns separated by tabs characters, not white space. I've eliminated the 'split' param from the validator as it was causing problems. Extract genomic DNA tool should now finally work correctly. 2 file(s) affected in this change: lib/galaxy/tools/parameters/validation.py tools/extract/extract_genomic_dna.xml diffs (37 lines): diff -r 77f8bf51b2ae -r 99e223f6a132 lib/galaxy/tools/parameters/validation.py --- a/lib/galaxy/tools/parameters/validation.py Fri Aug 22 10:39:58 2008 -0400 +++ b/lib/galaxy/tools/parameters/validation.py Fri Aug 22 11:22:44 2008 -0400 @@ -235,18 +235,17 @@ metadata_name = metadata_name.strip() metadata_column = int( elem.get( "metadata_column", 0 ) ) message = elem.get( "message", "Value for metadata %s was not found in %s." % ( metadata_name, filename ) ) - split = elem.get( "split", None ) line_startswith = elem.get( "line_startswith", None ) if line_startswith: line_startswith = line_startswith.strip() - return cls( filename, metadata_name, metadata_column, message, split, line_startswith ) - def __init__( self, filename, metadata_name, metadata_column, message="Value for metadata not found.", split=None, line_startswith=None ): + return cls( filename, metadata_name, metadata_column, message, line_startswith ) + def __init__( self, filename, metadata_name, metadata_column, message="Value for metadata not found.", line_startswith=None ): self.metadata_name = metadata_name self.message = message self.valid_values = [] for line in open( filename ): if line_startswith is None or line.startswith( line_startswith ): - fields = line.split( split ) + fields = line.split( '\t' ) if metadata_column < len( fields ): self.valid_values.append( fields[metadata_column] ) def validate( self, value, history = None ): diff -r 77f8bf51b2ae -r 99e223f6a132 tools/extract/extract_genomic_dna.xml --- a/tools/extract/extract_genomic_dna.xml Fri Aug 22 10:39:58 2008 -0400 +++ b/tools/extract/extract_genomic_dna.xml Fri Aug 22 11:22:44 2008 -0400 @@ -4,7 +4,7 @@ <inputs> <param format="interval" name="input" type="data" label="Fetch sequences corresponding to Query"> <validator type="unspecified_build" /> - <validator type="dataset_metadata_in_file" filename="alignseq.loc" metadata_name="dbkey" metadata_column="1" message="Sequences are not currently available for the specified build." split="\t" line_startswith="seq" /> + <validator type="dataset_metadata_in_file" filename="alignseq.loc" metadata_name="dbkey" metadata_column="1" message="Sequences are not currently available for the specified build." line_startswith="seq" /> </param> <param name="out_format" type="select" label="Output data type"> <option value="fasta">FASTA</option>

1 0

[hg] galaxy 1476: Better fix for interval_maf_to_merged_fasta wh...
by greg＠scofield.bx.psu.edu 22 Aug '08

22 Aug '08

details: http://www.bx.psu.edu/hg/galaxy/rev/77f8bf51b2ae changeset: 1476:77f8bf51b2ae user: Greg Von Kuster <greg(a)bx.psu.edu> date: Fri Aug 22 10:39:58 2008 -0400 description: Better fix for interval_maf_to_merged_fasta when no strand column in input, added functional test. 4 file(s) affected in this change: test-data/13.bed test-data/interval_maf_to_merged_fasta_out3.fasta tools/maf/interval_maf_to_merged_fasta.py tools/maf/interval_maf_to_merged_fasta.xml diffs (716 lines): diff -r 973d6cbeea87 -r 77f8bf51b2ae test-data/13.bed --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/13.bed Fri Aug 22 10:39:58 2008 -0400 @@ -0,0 +1,96 @@ +chr16 20682314 20682813 ENSG00000005187 +chrX 123339504 123340003 ENSG00000009694 +chr3 52503897 52504396 ENSG00000010327 +chr6 112089190 112089689 ENSG00000010810 +chr6 112089249 112089748 ENSG00000010810 +chr6 112089261 112089760 ENSG00000010810 +chr2 31310208 31310707 ENSG00000013016 +chr22 16598265 16598764 ENSG00000015475 +chr22 16598139 16598638 ENSG00000015475 +chr22 16596941 16597440 ENSG00000015475 +chr22 16596908 16597407 ENSG00000015475 +chr12 101335726 101336225 ENSG00000017427 +chr12 101320236 101320735 ENSG00000017427 +chr12 101320163 101320662 ENSG00000017427 +chr12 101313809 101314308 ENSG00000017427 +chr7 99282701 99283200 ENSG00000021461 +chr7 99263073 99263572 ENSG00000021461 +chr19 38013262 38013761 ENSG00000021488 +chr3 52206685 52207184 ENSG00000023330 +chr3 52206657 52207156 ENSG00000023330 +chr10 101532011 101532510 ENSG00000023839 +chr10 101531994 101532493 ENSG00000023839 +chr5 71651457 71651956 ENSG00000049883 +chr3 52796382 52796881 ENSG00000055957 +chr3 52786149 52786648 ENSG00000055957 +chr6 166698400 166698899 ENSG00000060762 +chr6 166698708 166699207 ENSG00000060762 +chr16 2029817 2030316 ENSG00000065057 +chr10 126075862 126076361 ENSG00000065154 +chr10 126075869 126076368 ENSG00000065154 +chr10 123223889 123224388 ENSG00000066468 +chr10 123227846 123228345 ENSG00000066468 +chr10 123229123 123229622 ENSG00000066468 +chr10 123229361 123229860 ENSG00000066468 +chr10 123229555 123230054 ENSG00000066468 +chr10 123231339 123231838 ENSG00000066468 +chr10 123231360 123231859 ENSG00000066468 +chr10 123287470 123287969 ENSG00000066468 +chr1 92746841 92747340 ENSG00000067208 +chr1 92860438 92860937 ENSG00000067208 +chr3 151165384 151165883 ENSG00000070087 +chr16 56546748 56547247 ENSG00000070729 +chr16 56475004 56475503 ENSG00000070729 +chr8 145589254 145589753 ENSG00000071894 +chr1 159899157 159899656 ENSG00000072694 +chr1 159899076 159899575 ENSG00000072694 +chr4 5763326 5763825 ENSG00000072840 +chr2 70753968 70754467 ENSG00000075340 +chr2 70744123 70744622 ENSG00000075340 +chr2 70744138 70744637 ENSG00000075340 +chr2 70742773 70743272 ENSG00000075340 +chr2 70744065 70744564 ENSG00000075340 +chr3 172801314 172801813 ENSG00000075651 +chr3 172812085 172812584 ENSG00000075651 +chr4 74565827 74566326 ENSG00000079557 +chr19 10684644 10685143 ENSG00000079805 +chr19 10689340 10689839 ENSG00000079805 +chr19 10689256 10689755 ENSG00000079805 +chr13 93889844 93890343 ENSG00000080166 +chr2 151974175 151974674 ENSG00000080345 +chr2 151974202 151974701 ENSG00000080345 +chr5 113796627 113797126 ENSG00000080709 +chr5 113725416 113725915 ENSG00000080709 +chr5 113725066 113725565 ENSG00000080709 +chr2 165249579 165250078 ENSG00000082438 +chr2 165249502 165250001 ENSG00000082438 +chr4 187745932 187746431 ENSG00000083857 +chr2 27572711 27573210 ENSG00000084734 +chr1 111758461 111758960 ENSG00000085465 +chr11 49124766 49125265 ENSG00000086205 +chr11 49124879 49125378 ENSG00000086205 +chr7 26298700 26299199 ENSG00000086300 +chr7 26297541 26298040 ENSG00000086300 +chr16 80625865 80626364 ENSG00000086696 +chr19 54159879 54160378 ENSG00000087086 +chr16 55552764 55553263 ENSG00000087237 +chr3 187840344 187840843 ENSG00000090512 +chr3 187840445 187840944 ENSG00000090512 +chr4 25358148 25358647 ENSG00000091490 +chr3 113535219 113535718 ENSG00000091972 +chr3 113534107 113534606 ENSG00000091972 +chr15 40483770 40484269 ENSG00000092529 +chr15 40427094 40427593 ENSG00000092529 +chr15 40481381 40481880 ENSG00000092529 +chr15 40457707 40458206 ENSG00000092529 +chr15 40438491 40438990 ENSG00000092529 +chr1 120055534 120056033 ENSG00000092621 +chr1 120063274 120063773 ENSG00000092621 +chr6 159106769 159107268 ENSG00000092820 +chr6 159106768 159107267 ENSG00000092820 +chr6 159106766 159107265 ENSG00000092820 +chr9 111041832 111042331 ENSG00000095203 +chr9 110974075 110974574 ENSG00000095203 +chr10 94822723 94823222 ENSG00000095596 +chr10 94823138 94823637 ENSG00000095596 +chr10 29005931 29006430 ENSG00000095739 diff -r 973d6cbeea87 -r 77f8bf51b2ae test-data/interval_maf_to_merged_fasta_out3.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/interval_maf_to_merged_fasta_out3.fasta Fri Aug 22 10:39:58 2008 -0400 @@ -0,0 +1,480 @@ +>hg18.chr16(+):20682314-20682813 +ctgtggatcagaggaccctgtgccagatcatacaactccttgcagttcatgtaaggactcggattttacctggagtggaaaaagaagcactgaaagatttgagcaggggagtaacctgatagcgtttatgtttAGTCCTGCCACTTCGACAGATAAACGCACCAATGGGCTTGATGAGATTTAGGCCAACCCATAACCGCCCCTCAACTTCTTTCCTTTCAATTTCAAAACTCCTCTATGGCTTCCTCCATCTGTTCTTCCTTCTGAGAAGTGCTCTCTCTGCCCCTTTACAGAACTAACCACTTCGGCAACTCCTTGGACACTTTCCTTCTTGTTAATAATTTGCTTTCTCCGCCCCTCAAAAGCTTGCTGTTTCTGTAAATCATTACCTGTAAGAGGAACCGCTGGGAGTCCTGTAAACTTTAGCCCAGAGCTTGGCTCCTCCTCCAGAATGTCTCCACCAATCAAGGAAAGTGTTTTGGGCCAGTCTTGCTCCTCC +>mm8 +GTCTGGGTCAGAGGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCCTCCTAGTAACGCACTGCCTTCCCAGCCTACTAAAACTCTGCTGTGTGTACAGATCATTACCTGTAATAAGACAGGCCAGGGTT-ATGTAAACAT----------TCACGCTCCTCCCACCAA-TATATCCACCAATTAAGGAAAGCACTGCCGGCCAGTCTGACTCCTCC + +>hg18.chrX(+):123339504-123340003 +CTACTGATTAGTAGTTTTGTTTTTTTTTTCTTTCCTCCCTCAAGCTTTAGGAGTTGTAAAAAGAATAATAATAGTTCAAGGCAGTATTAAAACCACAGCTGTAAGTAATAAAAAGTGCATTTCCTGAATATAATACAAATGTAACTTTAACAAACTAAAGGCACGAACCAACCAAATACGTATTACAAACTAGAAATGCACAGTTCAAGGTAATCACTATTAAGTAAAAGCTTCAAATATTTGTTTCTAATGGATATTTAAAGCAGTTTGAAAATGATACATCATCAATGAATTGCAAAAACGTATAATTGCTTAAAATATAAGCAAAATAGACTCTAATATTGACATTTTGGATTTGTGATAAAATACATAATCACATTTATGAATGCACTCTCTATATACAGTTCACAAATTATTTTTCCATTAATTTAAAAGAACATCAGAGGTTCTAGGAACTTAAGGTCCATTTTTAGGTTGGTGTGGAGGTATTCAAATTTTC +>mm8 +CAACTTGTTA-TACCTTTTTTTTTTTTTCTTTTCCTCCTCAAAACTTTAGGAGTTGTAAAGAGAACAATAATATTTCAAGGCAGTATTAAAACCACAGTTGTAAGTGATAAAAAGTGCATTTCCTGAATATAATACAAATATAACTTTAGGTAACCAAAGGCACAAACTAACTAAATACATATTACAAACTAGAATTGCACAGTTCAAGGTAATTACTATTAAGGAATAGTTCCAAATATTTCTTCCTAATGAATATTTAAATCGGTTTGAAAATGATACATCACTAGTGAGTTGCAAAAGAGCGCAATCACTTAAAATAGAAGCAAAATAGGCTCCAAGATTGACACATTGGGTTAGTGATAAAATAC---ACCACATTTAAGAATGCACT-TTTATGTACAGTTAACAAATTATTTTCCTATTGACTTCAAAGAATGTCAGAGGTTCTAGGAACTTAAGATCTATTTTTAGGTTGGTGTGGAGGTATTCAAATTTTC + +>hg18.chr3(+):52503897-52504396 +CGGGCAGGACCAGCGGCTCAGGAGTGGCTGGGGCTAGTGAGGGGATGTGGGTCTGGTGGGCTAGCAGGGTGCCTGTAGCGAGTCAGAGCCCCATGAGCGCCCTGGAGTTGGAAAGGTGGAGGCAGGAACAGACAGACCCATTCAGGGGCTGCCCTGCCTTCCGCCGACCAGCACCCCAGGAGCCTCTGAATGAAACACACTGGGCTCGCAGGCGGGGGACTCGTTCACGTGTGCCTTTGGATTTGCTTCAGAACCTCTGATAGAGCCCAGGTCCCGGGGCTCATGGTGGCCTGGACTTCCAGGTTGTGATGCCAGGAGGGTCCCAGCCGGGAAGCCCCGAGCAGGGCTCAGGCCGCCCATGGGGGGTCAGTGGCCAGCACCTTCCCTTCCGCCTGCAGGCTGCTGATATGCAGGAGGAAATCCTGGCGGGTTCCTGTGGGGGTGAGCTGGCGGGGCCTCCGGGCTGCTTTTAAGGCCACTGCCCGCCCCGTCCCGCCTG +>mm8 +--------------GGCTCAGGAAGGCCTGAGGCTGGT-AGGGGAGACCAGTCTGAGGGGCTAGCATGGTGTTTCCACC------------------TCTACTGGTGTCTGAAAGACTGAGGCAGCTGGGGGCCAGCCAGCCCAGGGGCTGTCCAACCTCCTAGGCACCAGAACCCCGA-AGCTTCTGAATG-AAAAAGCCAGCTTGACAGATGGGAAAATTATTTATTGGTGC--TTAAATTTGCTTTAGAATCTCCCCTAGACCCCAGG-CAGGTGGCTAATGGTGGTCTGGACCTCTAGACTATGGTGCCAGGGAGGTCCTGGCCAGGAAGCCCTGAACAGGGCCCAGGTCGTCCATGGGGGGTCACTGGCCAGCGTCTTCCCTTCCGCCTGCAGGCTGCTGATACGCAGGAGGAAATCCTGGTGGGTTCCTGTGGGGGTGAGCTGA---------CGGATAGCTTTTAAAGCGGCTGCCCACCCTGTCCTGCCT- + +>hg18.chr6(+):112089190-112089689 +AAACATGAAAAAAAATTTTATTGTTTTAGACAAAGAGGCCACTTTTGGAAAATAATACTTTTTTTTTTTTAGTTGAATCAGGTGAAGACAGAGTTAAAATCACATAGGATTTGCATTTTTAAAAAAGGAAAGCACTAGGATTGTTGGCACTGGAGTAACTATTTACACTGAACAGAGGTTTGGCCTTTTACATAACATCGATACAATGCATTTTCCAAAGTCTGAGAAATAACAAGGTTCTGTCTCGAATGCTTCACAGAGGAGGTTCGGATTTGGGGACAAGTGTCATTAATGAGGGCCATGGAAGTTCGTCAGCTTCAGAGTCACATGCAATCTGATCCTGGGCGGTTCCGCTGCTGGGGAGCAGCTGGCTACGGAATTGAAAGCTAATGGGGAGGGGTGGGGCAGCCTCTGGGACAAGGCCTCTCTCCGCAGACCCGGGCCTTACAGGTTTTCACCAGGTTGGTACTGGGGCTCTGTCGCGGTAAAGTAGTCTTCC +>mm8 +AAACATGAAAAAAAATTTTATTGTTTTAGACAAAGAGGCCACTTTTGGAAAATAATACTTTTTTTTTTTTAGTTGAATCAGGTGAAGACAGAGTTAAAATCACATAGGATTTGCTTTTTTAAAAAAGGAAAGCACTGGGATTGTTGGCACAGGAGCAGCTATTTACACTGAACAGAGGTTTGGCCTTTGACATAACATCGATACAATGCATTTCC--AAGTCTGAGAAATAACACGCTTCTGTCTCAGATGGTTCACAGAGGAGGTTCGGACTGGGGGACAAGTGTCATTAATGAGGGCCGTGGAAGT---TCAGCTTCAGAGTCACATGCAATCTGATCCTGGACGGTTCCGCTGCTCTGGGGCAGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTC-GGGAAGAGGC----GTCTGAAGCGCAGGCTCTCACAGGTTTTCACCGGGCTGATACTGGGGCTCTGTGGCCGTAAAGTAGTCCTCC + +>hg18.chr6(+):112089249-112089748 +TTTTTTTTTTTAGTTGAATCAGGTGAAGACAGAGTTAAAATCACATAGGATTTGCATTTTTAAAAAAGGAAAGCACTAGGATTGTTGGCACTGGAGTAACTATTTACACTGAACAGAGGTTTGGCCTTTTACATAACATCGATACAATGCATTTTCCAAAGTCTGAGAAATAACAAGGTTCTGTCTCGAATGCTTCACAGAGGAGGTTCGGATTTGGGGACAAGTGTCATTAATGAGGGCCATGGAAGTTCGTCAGCTTCAGAGTCACATGCAATCTGATCCTGGGCGGTTCCGCTGCTGGGGAGCAGCTGGCTACGGAATTGAAAGCTAATGGGGAGGGGTGGGGCAGCCTCTGGGACAAGGCCTCTCTCCGCAGACCCGGGCCTTACAGGTTTTCACCAGGTTGGTACTGGGGCTCTGTCGCGGTAAAGTAGTCTTCCAGGAAGCTCTGCAAGTACTCAAAAGTGGGGCGTTCTTCAGGGTCCTTTTTCCAGCAGTG +>mm8 +TTTTTTTTTTTAGTTGAATCAGGTGAAGACAGAGTTAAAATCACATAGGATTTGCTTTTTTAAAAAAGGAAAGCACTGGGATTGTTGGCACAGGAGCAGCTATTTACACTGAACAGAGGTTTGGCCTTTGACATAACATCGATACAATGCATTTCC--AAGTCTGAGAAATAACACGCTTCTGTCTCAGATGGTTCACAGAGGAGGTTCGGACTGGGGGACAAGTGTCATTAATGAGGGCCGTGGAAGT---TCAGCTTCAGAGTCACATGCAATCTGATCCTGGACGGTTCCGCTGCTCTGGGGCAGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTC-GGGAAGAGGC----GTCTGAAGCGCAGGCTCTCACAGGTTTTCACCGGGCTGATACTGGGGCTCTGTGGCCGTAAAGTAGTCCTCCAGGAAGCCCTGCAAGTACTCGAAGGTCGGGCGCTCTTCCGGATCCTTTTTCCAGCAGTG + +>hg18.chr6(+):112089261-112089760 +GTTGAATCAGGTGAAGACAGAGTTAAAATCACATAGGATTTGCATTTTTAAAAAAGGAAAGCACTAGGATTGTTGGCACTGGAGTAACTATTTACACTGAACAGAGGTTTGGCCTTTTACATAACATCGATACAATGCATTTTCCAAAGTCTGAGAAATAACAAGGTTCTGTCTCGAATGCTTCACAGAGGAGGTTCGGATTTGGGGACAAGTGTCATTAATGAGGGCCATGGAAGTTCGTCAGCTTCAGAGTCACATGCAATCTGATCCTGGGCGGTTCCGCTGCTGGGGAGCAGCTGGCTACGGAATTGAAAGCTAATGGGGAGGGGTGGGGCAGCCTCTGGGACAAGGCCTCTCTCCGCAGACCCGGGCCTTACAGGTTTTCACCAGGTTGGTACTGGGGCTCTGTCGCGGTAAAGTAGTCTTCCAGGAAGCTCTGCAAGTACTCAAAAGTGGGGCGTTCTTCAGGGTCCTTTTTCCAGCAGTGGATCATGAGCTC +>mm8 +GTTGAATCAGGTGAAGACAGAGTTAAAATCACATAGGATTTGCTTTTTTAAAAAAGGAAAGCACTGGGATTGTTGGCACAGGAGCAGCTATTTACACTGAACAGAGGTTTGGCCTTTGACATAACATCGATACAATGCATTTCC--AAGTCTGAGAAATAACACGCTTCTGTCTCAGATGGTTCACAGAGGAGGTTCGGACTGGGGGACAAGTGTCATTAATGAGGGCCGTGGAAGT---TCAGCTTCAGAGTCACATGCAATCTGATCCTGGACGGTTCCGCTGCTCTGGGGCAGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTC-GGGAAGAGGC----GTCTGAAGCGCAGGCTCTCACAGGTTTTCACCGGGCTGATACTGGGGCTCTGTGGCCGTAAAGTAGTCCTCCAGGAAGCCCTGCAAGTACTCGAAGGTCGGGCGCTCTTCCGGATCCTTTTTCCAGCAGTGGATCATGAGCTC + +>hg18.chr2(+):31310208-31310707 +AAGCAGGGAGTGTGATGAATAGGTCAACTCTGTCCTCGCAGCCGTCCCTGAGAGGGCGCTGTTCCCAAATCGAAGCCCCAGAGGCGGAGACTGAGACACCGGCACTCTCCCACTGGACTGGGTCAGCATCCCTCTCCCCGCGCGGCCGCAGGTCTAGAGCTGAGCGCCTGCCCACAAACATGGCGGCGCCCTGCGCGGCTTCCCGTCGCCGCAACCGTGGGGCCGGCCCTGCCTTGCCAGTACTAGGGGACTTCCTCTGCGCGCCGGCTTCCTGCCCAGCTGGCATTTAAACCACCGCCTGGGGCTGCAGGATGCTGCTGCGGATGCAGAGCTGTCCGCGGGCTGGGCAGCGTCGCCGTCTCCCCTGAGCCGCCTCGGTCCGGCAGGAGCGGAGCCGAAGCATCCCTTGCTGCACGCAGGGCAGAGCAGGCGAGGGCTGGGGGCCGATCGGGGACCCCGGCTTGGGACCCCGGCATCTGGCAGTTTCCTTGCAGGTTCA +>mm8 +AAACAGAG-----------TAGGTCAAGGCTGTCTTAGTCTCCGTCCTTGAGAGGGCGCTGCTCCCAAGTCAAATCCCCAG-GGCTGGGAAAGAAATGCCTGCGCTTTCCCACAGGACTCTGGCAGCAGCTTTTTGCCCGCGCGGCCGCA-----------GAGCGCCTGCCCATAGACATGGCGGCGCCCTCCTTGGCTTCGCGTCGCCCTGACCGTGGAGCTGGCCGGGTTTTGCCAGTTCTCGGGGACTTCCTGCACGT-----------------CTGGCATTTAAACGCGCGCCGGGGGCGGCGGGATGCTGCTGCGGATGCGGAGCTGTGTGA------------GCCGCTGCCTACCCGGCGCAGCCTGGGCTCCGCAGTAGCGGAGCTCGAGCATCCTTTAGTC-----------------------------ATCTATCTGGGGA----GACCTGGAACTCAGGCTT----CGGCTTCCCGGCAGGTTTG + +>hg18.chr22(+):16598265-16598764 +GGGCTCCGTCTACACTGGAAGCAGCTATACAGCTGTGACCACATCGAGCTTTAGCCAGTCACACTTCTGGAACTGTCCGTTCAGTCCATCCCCTAGAGCAAGAAAGGAGAAAAAGCCAGAATCAGCTAGGCTCATTCACAAACCAGGCTCCAGAGCTCTGTGCCACAGTAGAGCAAAGCTGGGGTTTATGCAAAAACATGTTCTCCAGACCCCTGAAGTCCTATCCGTGCATCCTACTTTTTGCTACATGGGGGCAACTGCAAAAACAGGCCGTTCAGGCGGTGAGGTGGGTATTCACATCTCCAAGGCACTGACGGTGTCAGGAGGCCCCTGCTGGGTCAGAGGAATCACGATTCTGCCTCAGCCCTCAGTCTCTGGTAAGCTGTCCATACAGACTGCTGCACACGTCTTGCCCACCCTTTCCCCCTTTACATGGGTGTTGGTAAAAGCTGTCCAGGAATGGTCTCAGGCTTACCTCCTTCCAACAATTCAGCTGGGT +>mm8 +TGGTCGCGGTTCCTCTGGAGGCAGTGTCACCA--------------------------TCGGGCTTGTGCGGGC-TCC--TCAGTCCATCTCCTAAGAAAGAGG---------CAGCAGAGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr22(+):16598139-16598638 +GACATTTTCATTCAAGTATATTAATGTAGATATTTTAAAGTGGGTTATAAGTTTAACATTGTCTTTAAAATAGAAGTCACAGCTATCTTCCAGCCTGTCTTCTCTAGGAACGCTGTTGACATGCCAGGGCTCCGTCTACACTGGAAGCAGCTATACAGCTGTGACCACATCGAGCTTTAGCCAGTCACACTTCTGGAACTGTCCGTTCAGTCCATCCCCTAGAGCAAGAAAGGAGAAAAAGCCAGAATCAGCTAGGCTCATTCACAAACCAGGCTCCAGAGCTCTGTGCCACAGTAGAGCAAAGCTGGGGTTTATGCAAAAACATGTTCTCCAGACCCCTGAAGTCCTATCCGTGCATCCTACTTTTTGCTACATGGGGGCAACTGCAAAAACAGGCCGTTCAGGCGGTGAGGTGGGTATTCACATCTCCAAGGCACTGACGGTGTCAGGAGGCCCCTGCTGGGTCAGAGGAATCACGATTCTGCCTCAGCCCTCAGTC +>mm8 +GA---------------------ACGCAGAGA-TGTCCAGTGAATCACCAGCTTGGCCACCACCTGGAAATAGGAGA--CAGCTGTTCTCTGGCCTGTCTTCAGGCCAAGGTCTTTC-------CATGGTCGCGGTTCCTCTGGAGGCAGTGTCACCA--------------------------TCGGGCTTGTGCGGGC-TCC--TCAGTCCATCTCCTAAGAAAGAGG---------CAGCAGAGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr22(+):16596941-16597440 +CCACACTGCGCGGCAGCACTTCTTTTTAGTATTTGTAAGCTTTTGCCCACTTTCAATTGAGCCAGCCCTAGCGTGGTATGTATTGCATGCTGAACAATATAGAGTTTGTTTTTCCTTTCTGATGATTTTAAACTCTTAAAGAACAGGAAAGCATCTGGTAAGAAGAAATCATGAGTCCGTCAGTGCCCTTACTCATATGCGTCTCCAGTGGCCTCATGTTGTGGTCACAGGAGTTTCCTGTTCACAGCAATGTGTGTGATATGGACCCAGCATCCACTGTCGTGCTTTTAAACTGATTCCTGGGACATAGCTTACCACTGGAACAGCAGACCAGTGTTGCACTGTTTCTAAAGCTAAGCTTTTCCTTATTTATTTTGGTACTACCTAAGTGACTTGGTTTTGACTGTCCCTAAGAGAGGGAACCACTTTGCTGAATTTTTAAAAAGTCCAACTGCTCTTTCATCTTTTATGCTTAGAAACCTGTTCTCTCCAGATGCAC +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr22(+):16596908-16597407 +GTGTTAGGAAGATTTATTTCCAAACAGTGGCCTCCACACTGCGCGGCAGCACTTCTTTTTAGTATTTGTAAGCTTTTGCCCACTTTCAATTGAGCCAGCCCTAGCGTGGTATGTATTGCATGCTGAACAATATAGAGTTTGTTTTTCCTTTCTGATGATTTTAAACTCTTAAAGAACAGGAAAGCATCTGGTAAGAAGAAATCATGAGTCCGTCAGTGCCCTTACTCATATGCGTCTCCAGTGGCCTCATGTTGTGGTCACAGGAGTTTCCTGTTCACAGCAATGTGTGTGATATGGACCCAGCATCCACTGTCGTGCTTTTAAACTGATTCCTGGGACATAGCTTACCACTGGAACAGCAGACCAGTGTTGCACTGTTTCTAAAGCTAAGCTTTTCCTTATTTATTTTGGTACTACCTAAGTGACTTGGTTTTGACTGTCCCTAAGAGAGGGAACCACTTTGCTGAATTTTTAAAAAGTCCAACTGCTCTTTCATCTT +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr12(+):101335726-101336225 +CATTTTCCTTTTTTGCCTCTGCATTCAGCATTTCTACTTCCAATCTCCCTCCTCTGCTCTTTCTTCTTTCCTCTGATCTGCAGACTTGCTTCTGTCCCCTCCTTCTGTTCCCctcctggatgtgtctttggccaacctttccttctctgagacttcgtgttcttgttggtagatgggggctgatactgtaaacatcacaaaaataATTGCATTGAGAACAAGTGGTTCCCATGGTGTCCCTTTGAATGAGCTCAGAATGCCCAGGCTCCATATGATGCAGGAGACAGCACTCATGCTGGAGAGGGGTCTAGACCTCAGTCACAAGACCCACCATTCCAGAACTTTGGGACTCATCTCTTGACACCTACCCCCTCCCCAGTTAGAAACCAAGAGGCGCTGGGTCACCTGGGAAGAGAAAGAATGAATCTGCCTTTGCCCCAGCAAGCACGCTTTCCTGCCACATTCACCTAAAAGTCTTTTCTGAGATCCTTGCTTCCTG +>mm8 +--ATGTCCCTCTTTGCCTGCTTGCTCACAGTTCCTAGC-CCAGTCTTTTTTCTCTG----------GGACCTCTGATTTTCCGAGTTGCCTCCGTTACCTCCTCCTGTTCCCCTTCTGGGTGTGTCTTTGGCTCACCTTTCCTTCTCTGCAGCTTCGTTTTCTTGTTTGTCGATAGGGACGGGGACTGCAAACATCACAAAAATAATTGCATTGAGAACGGGTGGCTCCTGTG-----TCTTTGAATCTGCCCAGAATGCCTGGGCTCCATAGGAAACAGAAGCTAGCTTTACTGCTGGAGAGGGTTCTACACCTCAGGCACCAGAGCCGAGGTGCCCGAGCTTTGCGCCTTATCTC-TAATACCCACTTCCTCTTCAGCT---------------------------AGAAGGAACA---------------------------CTCCTTTTCCCTTAATTTGCACAGTGATATCCTTTCTGACTCTTGTGCCCACCG + +>hg18.chr12(+):101320236-101320735 +ATCACTCCTAAAGACAATGTTGGAATGTTTACTTGTGTATTTCATTGGGGGAAACGCCCATCTTTTAAATGTTATCAAACTTATTTTTTGGTAGGTGTTCCAAAGTTTAACAGGTAACTCGTGCAGAGCAAAGGATCCTGCGGTGGCATGTCACTCTTCACTCCTCAGGAGGGTCTTCCTACATCCTGTAGTTCTTGTTTCCTGCACTCCCTCTACTTGCGTTCTTCAAATGTACTTCCTATAAATAAAGGAGAAAAAGTGACATTAACTTGATGAAGTTTTATGTATCCATCTATTTCTAACATTGGGCCTCAACCTTCCATGTCTTACGCCTTACCAGTTGAGCTAATAGAGAGCTTGAACCTTGGTTTTCCTGAGAAGGGCATGTATAGGTGGACAGGCCCTTAGTACTTTTGCCAAACCTCACTCAGGCATCTTCTATGTACCCCTGGTGGCGTGAATACCACAGACAGCTTTATAATCACACAAAGATGAGATT +>mm8 +AGCACTCCTAAAGACGATGTTGGAATGTTTACTTGTATATTTCATTGGGGGAAATGCCCATCTTTGTAATGTTATTGGACTTATTATTTGGTAGGTGTTTCGATGTTTTGCAGGTTGCTCAAGC--AGCAAAGGATCCTGCGGTGATGTGGCATTTTCTGCTCCGTGGGAGGCTCCTCCTACATTCTGTAGGTCTTGTTTCCTGCACTTCCTCTACTTGTGTTCTTCAAATGTACTTCCTGCAAATAAGAAAGATAAGCGGCCATTAAGTTGTTGTGGTTTTCTATATCCAT----TTCTAACACTGGCCCTCAGCCTTTTGTATCTTATGCCTCACCAACCTATCTTAAGGAGGGTTTGAGTCTTGAATTCTTTGAGAA----ACATACAGATGGTCAGGTCTTTAGTTAATTCAACCAAACTTGACCTGGCT--CTAGGAGCACCCA---TAGCATAGGTACC----ATTGCTTCATAATTACACCAAGAGGCTACC + +>hg18.chr12(+):101320163-101320662 +TTTTCTATAGAACATTATTGATAAAAGATCAACAGCAATCTACCAACTCCAGGACCATTTTTGCAAGGTGCAAATCACTCCTAAAGACAATGTTGGAATGTTTACTTGTGTATTTCATTGGGGGAAACGCCCATCTTTTAAATGTTATCAAACTTATTTTTTGGTAGGTGTTCCAAAGTTTAACAGGTAACTCGTGCAGAGCAAAGGATCCTGCGGTGGCATGTCACTCTTCACTCCTCAGGAGGGTCTTCCTACATCCTGTAGTTCTTGTTTCCTGCACTCCCTCTACTTGCGTTCTTCAAATGTACTTCCTATAAATAAAGGAGAAAAAGTGACATTAACTTGATGAAGTTTTATGTATCCATCTATTTCTAACATTGGGCCTCAACCTTCCATGTCTTACGCCTTACCAGTTGAGCTAATAGAGAGCTTGAACCTTGGTTTTCCTGAGAAGGGCATGTATAGGTGGACAGGCCCTTAGTACTTTTGCCAAACCTCA +>mm8 +TTCTCTATAGAATGTTATTGATAAAGGACCAACAGCAATCTACCCACGCCAGGACCACTTTTGCAAGGTGCAAAGCACTCCTAAAGACGATGTTGGAATGTTTACTTGTATATTTCATTGGGGGAAATGCCCATCTTTGTAATGTTATTGGACTTATTATTTGGTAGGTGTTTCGATGTTTTGCAGGTTGCTCAAGC--AGCAAAGGATCCTGCGGTGATGTGGCATTTTCTGCTCCGTGGGAGGCTCCTCCTACATTCTGTAGGTCTTGTTTCCTGCACTTCCTCTACTTGTGTTCTTCAAATGTACTTCCTGCAAATAAGAAAGATAAGCGGCCATTAAGTTGTTGTGGTTTTCTATATCCAT----TTCTAACACTGGCCCTCAGCCTTTTGTATCTTATGCCTCACCAACCTATCTTAAGGAGGGTTTGAGTCTTGAATTCTTTGAGAA----ACATACAGATGGTCAGGTCTTTAGTTAATTCAACCAAACTTG + +>hg18.chr12(+):101313809-101314308 +ATTACTAAAGAAAGATATACCATTTTATTATGACACTCTAGCCATACATTTTCAAAATATGCTTATTAAACAGTAAATGTAAGATAATGATTCAATTAGTTACATTTTTAGAAGTCATTAGGATTGATATTCCTCTGCCATAAGTGAATTGAATAATAATTTCAAATACAATCAGaattaatttaataaaaaatatGCTTTTCAACTAAGACAGATGTAACGAATGGCCAGTCATTATTTTCTGGTTTCAAAGTAGCAGGGGAAATTAATTCAGTGTCTGTAAGTTTATTTATCACACTTGGCCTATAAGTGTGATAAAAATACATGAGGCAAAATACATGATGTAATCCCAATTCTCATAGTTCATTAACTCTTTTACCAAAAAGATCTGACATGGTATTTGGGGCCTTTATGTAAACTGAATATAAGCTGCGTGATATTTGAAAGGTTTTGATATTTTGAATAGACATTTTCATGATACACAGACACAGATAAAAGA +>mm8 +ATTACTAAAGAAAGATATACCATTTTATTATGACACTCTAGCCATACAATTTCAAAATATGCTTACTAAACAGTAAATGTAAGATAATGATTCAGTTAGTTACATTTTTAAGAGTCATTAGGACAGATATTGCTCTGCCATAAATGAATTGAATAACCACTTCAAATACAATCAGGAGTAATTTGATAGAAGATTTTTTTTTGTG-TAAAACACATACAATGAATGACCAAATATTACTTTCAGGTTTC-----AGTAGGG-AAATCAATTCAGTGTCTGTAAGT-TAATCATCACCCTTGGCCTTTAAGTGTGATAAAAATAAATGAAGCAAAATGTGCGTTGTAATCCAGATTCCCATAGCTCCTTAAATCT-TTAACAAAGAGATCTGATATGCTATTTGGAGCTTTCCTGTAAACTTAATATACACTGTATGATGTTTGCAAG----------------------GTTTAAGGATACAGAGACACCGATAGGAGA + +>hg18.chr7(+):99282701-99283200 +TTCTGCTTTGCACAACCCTGGAGGAGTTGCTAGGTCTTGTTCCCATCTATTCTACTGGAAGAACTGGTTCTCTTCCACGTGGAAACCATGCATTTAAAAGGAAACTGGGATATAGTGACTGGAAACCACACCATTTGCCTTGATTCCACCATCCCCCTTCCATATGCTTACAGGAGGCTACACATTCAAGATAAATCTTTATTGagcatctagtatagagcctgccacccagtagatagttactaaatatttgttaaattcatgaTGCCTGTTTAACACATTTTCTACAACTATGGAGATCTCTAAAACTTACGTAGGACAAACTGCTTCTGCTTTGAACTCAAGCCTTTAGGTCCAATGGGATTTCTGAAAAGTGCCTTAAGTTTTGCTGAAGATGAAGAATGGAAGAGAATACGAACATTGCTATCTCCAGCTTTCACCAGTGTAAAATTCAAGGAAGTAAGAAAATAAGGTGATTTATAATTAGAAACTTAAAGGA +>mm8 +TCTTTTTTTGCAAATGCTTGAAAGACACTGCAGGGCTGG--CCTAT----TCTCATGGA-------------TTCTGCAAGGGCGATTTTCATTTAAAGTGAGATGGTCATAGAAAGATGTGAAGCTGTGCCAGATGGATAGATATCACCTTCA----TTTATAGGATTACAGAAATTTTCA--------GTAGAAGATTGTTGAACATCTAGTA-AGATCCAGAAAATT-----ATAGT-----AATGTTTGTTAAATAAATGATGCTTGTTTAATATACTTTCTAAAATTGTGAAGATTATCATAATTTTAATATGATAACCTTCTTTCCATTTGAACCTTAGTTTTTTGGGCCAGTGGGATTCATGAAAAAGGCCATTACCATATCTGAGGATGAAGAATGGAAGAGACTTAGAACACTCCTGTCTCCAACCTTCACCAGTGGCAAACTCAAGGAGGTGATTAGAGAGGGTGTTC-----------ACTTAAGGAA + +>hg18.chr7(+):99263073-99263572 +gctttctaaaaagaattatttttatttgggaataaagcattgcaatgggaatatgcgtgccaaggtaaactatgtgcttattcaggtaggtaaagtaagacaaagtttaaaaaaataatgagaaggattacatatttgttttggaatgattatccttggctataaagatcaataacaagactgacatcagtttgaggttggacaggcagttgctgggcagatgttcttgcagaagtatttttctttaggttCCTGAGAATCTATAACCTTTGGGCTTACCAATAGCAGTGACTGATTTGTTTACTGATTGTTCACAGAATAGGAAATCAAAGGAGGCCAAAATAAGGACAGCCATAATTATTTGCCAATTGTCAATTTGAAAAGGGTACCCAAATCCCTCCATATGAGGAGTAGCATAAGTGGCTTTTCTACTGGCTGCCGCTGTAGACCCACCTCCTTCTCCAGCACATAAATATCGCTGTTAACATTAACTAAATCA +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGAATATAAGCTCAAAGG---TCAGAGTAAGAAAATGCATGACCCTTTGACAAATGCCAGGTGAGAAGCCACACCAGACCTACAAGTT--CGAGCATTGTGCAAGTGGCCCTTGTACTGGCTGAATCCCTGTAACCTCCTCCTTTCCCAGCAAATAA-----ATAGACTGGCCTCACTAGATGC + +>hg18.chr19(+):38013262-38013761 +ACATCTGAGTATATTTTATTCGTAAGAAAAAAAGGAAGAAATAACCACAAATATTGCTTAAGAAAATAAATTCAGCTGACTTGGCTACAAGAGACGGAGCTTGTTACTCAGGGTCTTCCTCCGGTGGGACCACTTCCATTAGCATCTGAAGGTGCATGGTAATCGGCTCTGAAATAAGAGTCAAAAATGAGTACAGTTAGTTAGACTGAAATTCGAAAGTTTCACTGGAGTTGTTGTGGGTGAGGGTGACATTGTTTTCAGTCTTTGGTGATGCGTCACCTAGACCCTGTGCTCAGGATGGCCAGCTTTCCTGCCTTCTGGTTGGATTTCACACTTTCCTGGCTTCTGTCTTCTCCCAGAATTGCAGGAATAGAAATAAAAACCTCCTAGGAGTGTCCGGAGGGACGACTGCACTTTCCAGTTCAGATGAGCTGAACAGGAGAAACAGGCAGGCTTTTAATCACATTCACTTAATAAATCTTAACTGGCTGTTACAGGC +>mm8 +ATATCTGAATACATGTTTTCATTAAGAAAAACAGGAAGAAATAACCACAAATATTGCTTACAAAAATAAATTCAGCTG----GGCTACGAGTGATGGA-CCTTTTACTCTGGGTCCTTTTCTGGTGGGACGACTTCCATGAGCATCTGCAGGTGCTTTGTGACCGGCCCTGGAACAGAAGCGAGGCATAGGTGCAGTTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAACCACAGTCACTCAGTTAACACTAAGTGGCTGTAGTGCAC + +>hg18.chr3(+):52206685-52207184 +CAGGACCACTCCATTTGTGGGCGATATAGCCAGCTCCACCTCCTCCGGGAAGCCCTTGTTCACAGTTTCCAAAGCAAGCCGCAGGCGGGATGGATCCTGCTTAACACCCCGGCCCAGAACCCCTTGGATCTCCTTCTTCCTCCATGTCCAAGACACCCAGCTTAACAACCCTGTAGCCCCCAACTTGGCCCTAGCGGCACCTCGCCTCGACCTTGCCATTTTATACTCAATTGGGGCGTAGGGTTCTGAAGCCCAGGGTAGTTGGTGGGGAGGCAGCACGAGGGTGCAGGATGAGGTCGGGAAAAGAGACCTCGTCCGCCCACCGCCTAGCGCTTCCTCCTCCCTGCAGGCGAGCCGGGGAATCCCCGGCAGCACCGATATCCGCAGAGCCCAAGAAGTGGGCCTCTCTGCCCCGCCCCCCCGGCTCGCCGAGGGCTACGCGGCGCGCCTGCGCAGAAGAAGGCAGCGCCCAAGGCGCATGCGCAGCGGTCACTCCCGC +>mm8 +CTGGGCCATTATATTCTTGGGCCATCCATCCA-------TGCAGCAAAGAAG--GTCTGTCATCGAAGCAAAGGCAAGCCCTTCGTTGATCGGAT----CTTAAGACCCTGGCCCGAAA-CCC------------CTTCCTATATGCCCAATAAACCCA-TTT-------TTTTAGCCTGTAG-ATTTCCCCGGGTGGGGTTGGTTTCGACCT--------------CAGCGGGGGCGCAGGAGTCTGACGCATAGGGCTGTTCG-TAGAAGGAGACAAGGGACGAAGGGAAGGGATCCAAA-AAGGGACTTGCCCCGTCCACCGCCCTGCGCTCTTGGCTCC------GGCAGCGTAGG-----CCTGAGACATAGTCAGTTGGAGAGGAACAGAGAGGGACCCTGGCACCTTGCCGGGCCGGCTTC-----GG------CGCGCGCGTGCGC-GCGGCAGGCCGCACCCAAGGCGCATGCGCGGCGGTCACTCCGGC + +>hg18.chr3(+):52206657-52207156 +TGAGTGTCCCGCTTCTTCCGCATCCTGCCAGGACCACTCCATTTGTGGGCGATATAGCCAGCTCCACCTCCTCCGGGAAGCCCTTGTTCACAGTTTCCAAAGCAAGCCGCAGGCGGGATGGATCCTGCTTAACACCCCGGCCCAGAACCCCTTGGATCTCCTTCTTCCTCCATGTCCAAGACACCCAGCTTAACAACCCTGTAGCCCCCAACTTGGCCCTAGCGGCACCTCGCCTCGACCTTGCCATTTTATACTCAATTGGGGCGTAGGGTTCTGAAGCCCAGGGTAGTTGGTGGGGAGGCAGCACGAGGGTGCAGGATGAGGTCGGGAAAAGAGACCTCGTCCGCCCACCGCCTAGCGCTTCCTCCTCCCTGCAGGCGAGCCGGGGAATCCCCGGCAGCACCGATATCCGCAGAGCCCAAGAAGTGGGCCTCTCTGCCCCGCCCCCCCGGCTCGCCGAGGGCTACGCGGCGCGCCTGCGCAGAAGAAGGCAGCGCCC +>mm8 +TGGGCTCCCTTCTTCCGCAGCCTCTCTCCTGGGCCATTATATTCTTGGGCCATCCATCCA-------TGCAGCAAAGAAG--GTCTGTCATCGAAGCAAAGGCAAGCCCTTCGTTGATCGGAT----CTTAAGACCCTGGCCCGAAA-CCC------------CTTCCTATATGCCCAATAAACCCA-TTT-------TTTTAGCCTGTAG-ATTTCCCCGGGTGGGGTTGGTTTCGACCT--------------CAGCGGGGGCGCAGGAGTCTGACGCATAGGGCTGTTCG-TAGAAGGAGACAAGGGACGAAGGGAAGGGATCCAAA-AAGGGACTTGCCCCGTCCACCGCCCTGCGCTCTTGGCTCC------GGCAGCGTAGG-----CCTGAGACATAGTCAGTTGGAGAGGAACAGAGAGGGACCCTGGCACCTTGCCGGGCCGGCTTC-----GG------CGCGCGCGTGCGC-GCGGCAGGCCGCACCC + +>hg18.chr10(+):101532011-101532510 +TATATAACATATAGGCTCACACTGGATAAGCTATTTTATAACCTGACTTCTTCAAAGAAAGTTTACATCATGTTTAAACCATGTTTTAGATTCTATATTTTTAATTAAAAATCTAAGGAAGAAGGATATTTCACATTTCTATAAACTCTAAGATCTTGCAGCAGAAGCGAAACTGCACATTTAGGGGTGCCTGCCCCTCTACTGATGCTGCCCTTTGTGGGTCATATGTCCTTAGGAAAATGAAAGACTGTGCACTCTTGATTTGTTGGCCAGCTCTGTTGACATCTTTCAGTGGTTCCTTTTATGTATGGCCACTCCTACAGAGGCCTCTTGTACTTTGGGAACTGGTGAGTCTCCCTGTCCCTAGGGCTTTTTAGTCACATGTCCATCCACTGTTTCAATGTAACATGCATCTAGGCAAGGTTAACGATTAAATGGTTGGGATGAAAGGTCATCCTTTACGGAGAACATCAGAATGGTAGATAATTCCTGTTCCACT +>mm8 +T-------TCATTGATCCACAATGCTTTCGCTCTTTTATAACTTGACTTTTTCAAACAAAGTTTATATTAC-TTTAAACCGTGTTTTATGTTTTAAGTTCTTAATCAAAA----AACTCAGAGGGGTATTTAACATCTCTGTGAACTCTTAGAGTTC-AAACTGAAGTAAAACCCCACATGCAGGGATGCATAGGTTGTGTACTGGACT-TCCGACCT--------------------------------------------------GCCAACTGCATTAATGTCTCTGATTGGTTCTTTCTAGATTTGGTCACA-CTACAGGGGC----AGGGCTTTGAGAAGTGATAAGCCTCCCAGTATCTGGTGATTCCCAGTCACATGTCTGCTCACTGGGATGACATAGCATTCATC-TAGCAAAGTTAACTATTAAGTTGTCAGGATGAAAGGTCAGCCTTTAATCAG----TGAGGATGGAAAGCAATTGCTCATCTGCT + +>hg18.chr10(+):101531994-101532493 +TGAAAGCCTGTATTATGTATATAACATATAGGCTCACACTGGATAAGCTATTTTATAACCTGACTTCTTCAAAGAAAGTTTACATCATGTTTAAACCATGTTTTAGATTCTATATTTTTAATTAAAAATCTAAGGAAGAAGGATATTTCACATTTCTATAAACTCTAAGATCTTGCAGCAGAAGCGAAACTGCACATTTAGGGGTGCCTGCCCCTCTACTGATGCTGCCCTTTGTGGGTCATATGTCCTTAGGAAAATGAAAGACTGTGCACTCTTGATTTGTTGGCCAGCTCTGTTGACATCTTTCAGTGGTTCCTTTTATGTATGGCCACTCCTACAGAGGCCTCTTGTACTTTGGGAACTGGTGAGTCTCCCTGTCCCTAGGGCTTTTTAGTCACATGTCCATCCACTGTTTCAATGTAACATGCATCTAGGCAAGGTTAACGATTAAATGGTTGGGATGAAAGGTCATCCTTTACGGAGAACATCAGAATGGTAG +>mm8 +--------CAAATTATGT-------TCATTGATCCACAATGCTTTCGCTCTTTTATAACTTGACTTTTTCAAACAAAGTTTATATTAC-TTTAAACCGTGTTTTATGTTTTAAGTTCTTAATCAAAA----AACTCAGAGGGGTATTTAACATCTCTGTGAACTCTTAGAGTTC-AAACTGAAGTAAAACCCCACATGCAGGGATGCATAGGTTGTGTACTGGACT-TCCGACCT--------------------------------------------------GCCAACTGCATTAATGTCTCTGATTGGTTCTTTCTAGATTTGGTCACA-CTACAGGGGC----AGGGCTTTGAGAAGTGATAAGCCTCCCAGTATCTGGTGATTCCCAGTCACATGTCTGCTCACTGGGATGACATAGCATTCATC-TAGCAAAGTTAACTATTAAGTTGTCAGGATGAAAGGTCAGCCTTTAATCAG----TGAGGATGGAAA + +>hg18.chr5(+):71651457-71651956 +CCACCCCAACACATAAATCTGGCGAATCATACGCAAATTCCCTCATGCTATATAACCTTCCACTGCTCTTCGTACCTTTGGACAGGAACATACTGTTATTTTAGGGAAGGAAATGGATCAGATACCTTGTCTCCTTCTTCTGCACTACCAAACACCCCAAATGGCGTCCCTAGCAATCAGATTCCAGAAACGTTTCCTCTCCTCTTGAAAGCCCACCGCTCCCTTCACCCAAAAAACAGAATAATCAGGGGCCTAATGAAGCTGTCCGGCCAACCTGCAGGAGAGAGCTGAGGAAGAACCACTTGCCGCGCCAGGAGCATCCCGCGCCGCACTATGGAGGCAGCCATCTTGGAGCGTACCAAAAGGAACAGCCAACGGGTTACGGACAGAGGAAGGGGCGGGGTTACAGCTCGACCTCTCGGGGCGCCCAGAATTGGACGAATCCCTTTTGTCGCTCTCGACGACAGGACCGACGCTCCGCCTCCTCGCCCCGGTTCCA +>mm8 +CTAATTTAATACATTAAACTTGCAAGACATACGCAGA--ACCTCATGC--TACAGCCTTCCCCTACTTTTCAAAAGTTTGGAATGGCGGGTACTAGCCTT-----AAAGAAGAGGGA---------TTATTTTTCCTTTCTGGGTT-ACCAATACCCTAAACGGCTTCTCTAGCAACCGGATCCCAGACGCACTTATGCGCTTCCTGGAAGCCCATCACCCCCTTCCTTCAATAAACAGCGTGCTGGGAGGCCTAATGGAGCTGCACCACCAACCTGCGAGGCAAAGGCGAGACGCGTCTAGTCGCCGAGCCAGGAGCATCCCACACCGCACCATGGGAGCCGCCATCTTGGAGCGCACCAAGTGGA----------AGGCGGGCGTGGG----GGGACAGGCACAGAGCCCGCCTCCGC--------CGGAAGTGGTCCTAC---------CACCTCAGA-G----------------GTCCCCCCTGCCCGGGTCCC + +>hg18.chr3(+):52796382-52796881 +TCCGTCCCCTGAGCCGCCCTTCTCCACATCACCGCGAACTCCCTGCTGCGCTTTGTGAGCTTTTGTGCAGGCTGAACCCCCAGCAGCCTCCACTGGTCCCCTCTTGGTGTGAGTGTATGTCTGTGAGGAGGCAGGACCCCAGGGGAGGGCTGAGACCCCCAGAGGGACGGCTGGGCCCAGGCCTGTTGTGGACAGAGCTGCATGCCTTTCGTGTGGGGCACCGTGGGTGACACTGTCTTCGATAATATGTCCTTGTCTTCTACAGAGATGCTGGGACCCAGAAGGAGTAAGTGGCAGCCATCCTGGCCATTCACATCTCTACCCCTCCTTGATGATCACCCCGTTGGCTTTCTTCCTCCGTTCTAGCTGTCTTCACTGCTTGTCACTGGGAATCTTTAGAACAGACCTCTGAACAGCCTGGCCTCCCCAGCCTGAGGTCCCTGGGGGAGGAGACAGAGAGGGGGCCAGCTAAACATGCCAGGCCAAGCTTCTGTCCCCG +>mm8 +TCTG-------------------------------AATCTCAGGGCTGTGCATCACGAGCCTTT-----GCCTTCCCTCG----GGTCTCCATCAAGCCCCTCTCCCCG---GTGTCTATCTGAG-GAAGTCGAGGGCATTTGAGAGGGCTGAG-CCTACAGTAGTTCATCT----CTCACCCTGTTGAGGAGTGAGCTACATGCCCTGGAGGTGGGGTATC-AGAGTAACAGTGTTT-----------TCCTTGTCTTTTGCAGAGATGGTGGGACCCAGAAGAAGTAAGTGGTAGCCATCTTGGGGACCCCCTTCTTCACCCCTTCCTCCTACTTACCCTGTTGGCTAGCTAGCTCTGCCCTGGCTATCACTAGCTCTGGTTCCTGGGATTCCTTAGGACAAGCCTCCGTACAGCTTGGCTTTCCCAG-----GGTCCCCATTATAAAAGACATA--GGAGGCCAGGTCATCTCCTAGGACCAAACTTTTGTACCCA + +>hg18.chr3(+):52786149-52786648 +atcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcactgagccaagatcctgccactgcactctagcactcaagaccaaaactccatctcaaaaaaaaaaaagtaaaGCCTAATGAAGTTTAGAAATCCATTTTTAACTGTTGCTTCTTGCCACATGTCACCGTGTCACTGGTGCTGCCTTGTGCCAGCCCGAGGATGAGATGAGCCATCCGGGGATCCTCACAGTTCACATAGGCTAAGCGCAGTTCTACACAGAGGGACATGGTCTGGAGCCCCATCAGTAGTTTAACCACCCAGAGCTGGGAACCCCCCTGAGGCAAAAAGCTTCCACTGCCAAATTTTGATTCCTCTAAATGTGttaggttgatgcaaaagtcattgcggtttttgtcattaaTATTTGCCTGCACCTTGTCTAATGTTTAATCCATGTTTATCCAGCACTGTATTGATTACTGGTCTGACTGAGGTGA +>mm8 +---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTGCCTCCGCTGTGTCTAATGTTTAAACTGTGTTTGTCCAGCACAGTATTAACTAACAGTCTGAGGGAAGTGA + +>hg18.chr6(+):166698400-166698899 +ACAAATATTTAAATCATTTATTGCCATTAAGTTACAGCATCTCAATATATACACTGCATGGAAATACACAGGTAACATTTTTAAACAGTGGGGACAAAATTTTAAGTACGTGGCCAGCTGTTGGTTGTCTTGTGGTCATTAAAGACAATGTTAAGAATCAGGAGTACTTAAGTGCTAGTGGTTACAAATTTTGTTCTCTTCAGTTTTTCATTAAGTAAATTCTAATAGATGATATACATATTACTGCAGATAAAACCATCATCAGAAATTATTAAATTAATTGCATATTTTGAGCTACTCTTTATGGAAAGAAGTAAAATATTTAATACTTGTAAGGCAGCAGAGAGTTGGTTTAGAAACTCTCAGCTATTTCTATAAAAATAGAATGGTTAGTAAAAATAGCATTCAGTGTATTTTCCTTAGGGAGGCTATTTATAATGAAATCTGTGACTCAGCAGCAGCTGGCAATGCTGTCCCTTCAAGACCTTGTTCTTCCTTT +>mm8 +GCAAATATTTAAACCATTTATTGCCATTAAGTTACAG-ATCTGAGT-TACA-----TATGGAAA-ACACCGAT---ACTTGTTATCACTGGAAATTATG-TGTAGACATGTGACCAACTGAGGGTT-TACTATTGTCATTAAAGAAAAAGTCAAGAATTTTGAGTACTTAAGTGCTTGTAGTTATAAATTTTGTTCCCTTAGATTTTTTATTACACAAATCCCAATAGATAATATACATATTACTACAGATAAAACCATCATTCAAAATTATTAAATTAGTTGCATATTTTGAACTACTCTTGATGAAGACAAATAAG--GTTTAGCATTGATAAGGCAGCAGAGAGTGGGTTTAGGGACTCTCGGCTAT-TCAATAATGTTGGCATGGTCATT-AAGATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGAGATCTGTGGCTCAGCAGTGGCTGG-AGCACTGTCTCTTCAAGAGCTGGTCC------T + +>hg18.chr6(+):166698708-166699207 +AAGAAGTAAAATATTTAATACTTGTAAGGCAGCAGAGAGTTGGTTTAGAAACTCTCAGCTATTTCTATAAAAATAGAATGGTTAGTAAAAATAGCATTCAGTGTATTTTCCTTAGGGAGGCTATTTATAATGAAATCTGTGACTCAGCAGCAGCTGGCAATGCTGTCCCTTCAAGACCTTGTTCTTCCTTTTCCATTGTTATGCAGATGCCGTTTTAGTCATCCTGGAAAGAAACAAAAAGAAAAATTCAATGAGAAACAAAATTTCAATGCCAATCGCAAGGGCTTTGGATGGCTTTTAAAAGACACCTTTACATAACATTTATTTCAACTTACAACTTATAAAAACAATAATATaggttgggtatccctcatctgaaatgcttaggcccagacatgtttcagattttttcagatttcggaataactggattataccagttgaacatccctaaactgaaaatccaaaatccaaaatgctccaatgagcacttcctttg +>mm8 +GACAAATAAG--GTTTAGCATTGATAAGGCAGCAGAGAGTGGGTTTAGGGACTCTCGGCTAT-TCAATAATGTTGGCATGGTCATT-AAGATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGAGATCTGTGGCTCAGCAGTGGCTGG-AGCACTGTCTCTTCAAGAGCTGGTCC------TTGTACCGCTATGCAGATGGCCGCTTACTCATCCTGGAAATAATT--GGAGACAATTTCAATGAGACACAAAGTCTA-CCGCCAGTCCCAGAGGCTCTGCATGGCTTTAGAA-GACAAGTTTCTATAACATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr16(+):2029817-2030316 +CATCTGCAAACACACCAAAGCTTTATTCAACAGGCGTGGCTTCCTGAAGCGTAAAGCCACTTCACAGACGGTGGCCACAGCGGCACCTCGGCCAGAGCCATGCGGCCATCAGAGACCCTGGGCGGCCGGGCAGAGGGCTTGGTTGAGGCAGGCGTGGCAGCGAGGGTGCACAGGCAGACAGGTCTGCTGGCCGAAGCCCACCAAGAGTCCATTGATCTCGTGCCACAGCTCCCTGTGGGGGTGGGGGCTGGGTCAGTGCTGACAGAGGGCGGGCGGGGTGAGCTCTTCTCCCTAGGAAGCCCCCCACATACTCATACCTAGGCAGCCACTCCTCCAGGGCGGCGCGGGTCTCCTCTGGGGACTTGGTTGCCTTCTTGGTCCACCTCAGCCTGTTGGCGATTCTGTGCACATGCGTGTCCACTGCTGCTGGGAGGCCAAGCGGGGTGAACAGGGGCACACTCCACCAGCCTAGCCCGTGCCCCTCCCCGCCCAGAGGCGA +>mm8 +CAGGTGCAAACACCCCCAAAGTTTACCACCCCGCC---------------------------------------CCACAAAGGCACCTCAGAGGAAGCCCTATGGCCCTTAGAGATCCTGGGCAGCAGGGCACAGGGCCTTGTTGAGGCAAGCCTGACATCGAGGATGGACAGGAAGACAGATCTGTTGGCCGAAGCCTACCAGTAGTCCGTTGACCTCACTCCACAGCACCCTGTGAGGGTAAGAGAAAGGTCAGT-------GTGGATGACAGCAGGACACCTCCCTCCCCCAAGCTCACCAAGCTACACTGTACCTGGGTAGCCACTCTTCCAAGTTCTTACGTGTCTCTTCTGGGGTCTTGGTCATCTTCTTGGTCCACCTCAGTCGGTTGGCTATTCTGTGCACATGTGTGTCCACTGCTGCTTGGAGACAAGGCAGGCTGACC--AAGGGCACTCTGCCAG-CTGGGCTGTGTCCCCCCCGGTCCTAAGGTGT + +>hg18.chr10(+):126075862-126076361 +ACATTTGAAATATAAGCTTTATTTTAAATTTAAAGAAGTATTGAAAATAAACATTTTTTACAAATTATAATCAAGCACTCAAAACAATTTAGGAATGTTAAACACTAATTCTTAATTCAAAATAATGACATCCATAGAATACAACCCTGGTGTTGGCCAATATGAAGTTTACTTAATATTAGTATTTTATATACACTTAACCATTAATCCTTCCTAAAATTCAATAACAATGATTTCACTTTATAAGATGAAGCCTTTTATGCAATACCCAGAGATAACTTTTTCAAATATGAAACACTTATACCAGTGAGGAAATTATAAAAACATATATCAATTATACTGAAGGACTTGATTTAGAGGCTGTCTGTATATAGATGCATTTCACCTTAGGAAGTACACATGCACATCAAAACACTTCAACTGAATATAGATGCCATTACATTATTTAGTTACGTTACAAAGCAAACGGCAGGTTCATAAACGTTGTTCTATTATGTAT +>mm8 +-AAAAGAAACATTAAGCTTTATT-------CAAAGAAATACTGAAAATAAA--TGTTTTACAAATTGCAATCAAGC----AAAGTGATTTAGTAATG---------AATTCTCAGA-------------ATCTATATAATAC-ATTCTGGTGTTGGCCAATGAAAAGTTTACTTTAAACTAGTATTTTACATATGCTTAACCTTCAATCA-ACTTAACATTCATTGATAATGATTTAAC------------TGTTC----TGTAGTACTCAGAAATAACTTCT--AAATACAAACCATTCACATCAGCAAGGAAACTGTAAAGACGCACGTAAAT--GACTGCAGGCCTCCATCTGCAGGCTGTACGCAGATGGGTCCGTTTCTCCTTAGAAAGTTCCCA----CACAGTCAAACCTCAACAA---AGAGACGCC-TCTCGCTCTACTTTTCTGTCACGCAGCCACCTGCAGGTTCCTAGGTGTCACTCTATTATGCAT + +>hg18.chr10(+):126075869-126076368 +AAATATAAGCTTTATTTTAAATTTAAAGAAGTATTGAAAATAAACATTTTTTACAAATTATAATCAAGCACTCAAAACAATTTAGGAATGTTAAACACTAATTCTTAATTCAAAATAATGACATCCATAGAATACAACCCTGGTGTTGGCCAATATGAAGTTTACTTAATATTAGTATTTTATATACACTTAACCATTAATCCTTCCTAAAATTCAATAACAATGATTTCACTTTATAAGATGAAGCCTTTTATGCAATACCCAGAGATAACTTTTTCAAATATGAAACACTTATACCAGTGAGGAAATTATAAAAACATATATCAATTATACTGAAGGACTTGATTTAGAGGCTGTCTGTATATAGATGCATTTCACCTTAGGAAGTACACATGCACATCAAAACACTTCAACTGAATATAGATGCCATTACATTATTTAGTTACGTTACAAAGCAAACGGCAGGTTCATAAACGTTGTTCTATTATGTATCAACTGA +>mm8 +AACATTAAGCTTTATT-------CAAAGAAATACTGAAAATAAA--TGTTTTACAAATTGCAATCAAGC----AAAGTGATTTAGTAATG---------AATTCTCAGA-------------ATCTATATAATAC-ATTCTGGTGTTGGCCAATGAAAAGTTTACTTTAAACTAGTATTTTACATATGCTTAACCTTCAATCA-ACTTAACATTCATTGATAATGATTTAAC------------TGTTC----TGTAGTACTCAGAAATAACTTCT--AAATACAAACCATTCACATCAGCAAGGAAACTGTAAAGACGCACGTAAAT--GACTGCAGGCCTCCATCTGCAGGCTGTACGCAGATGGGTCCGTTTCTCCTTAGAAAGTTCCCA----CACAGTCAAACCTCAACAA---AGAGACGCC-TCTCGCTCTACTTTTCTGTCACGCAGCCACCTGCAGGTTCCTAGGTGTCACTCTATTATGCATCAACTGA + +>hg18.chr10(+):123223889-123224388 +AATTTATAAATCTGTAAGTGTCCTCTGTCCCTTTCAAAGAACCTCATGCTATGGATTTTAACTAGTAAGAGACACCAGCAAGCGTCAGTTAAGTGTCCTCTGTCCCTTTCAAAGCACCTCATGCTATGGATTTTAACTAGTAAGAGACACCAGCAAGCATCAGTTAAGTGTCCTCAAAAGAGAATTAgaggctgggagcagtggaatggcttgaacccaggaggcggaagttgcagtgagcctagatcatgccattgcactccagcctAAAAAAGAATTAGAAGAGGAAAAGAAACCTAAAAGGAGTGCAGCCCAAAAGGAGGCAGTGTTCTGAGCTGCAGAAGGAAAAAATCACCTACCCATATGTGCACGGTAAGCTGAATTCAGTCACTGAACAGCTTCATGTGCTGAGGTATCCCTTTGTAAATTGTATTTCAAAGGTCCGGAGCGGATGGTTCCCCAGTGCCGGACATTGAATGCCCTCCCATCCACTGACTTC +>mm8 +-----------------------------------------------------------------------------------------------------------TTCCAAGTCCATCATGCTATAGAGTTTGACTTACAACTGATACAGGCAAAATTCACTCAAGTACTCCCA--------------------------------------------------------------------------------------------ACAAAGGAACTGCAAGAGGACCAAGAACCTGAATAGA---CAACCCAGGAGGACACAGGGTTCTTTG-TGGAGAAG--CAAAGTCACTTGTCCACATATATATTTTAAACTAAACTTTATCTCTGAACTACTCCGTGGCCTAAGGCTCCACTTAGGTAA---TATT----TGGC-----------ACTGTCTGTATG-------TCCACTG----TCTGTACTGTGCCTCT + +>hg18.chr10(+):123227846-123228345 +AGTTGCGTGACATTTATTTTGTCTTGTTAACATTAATATCTGTAGAAACATTTTTATTGTCAGTATAAAAATTAACAGGTTTTATTAAATACTTTCTCCAATTTTGTAACACATAAGATCAGTGTAATCTGCATTCATCTTGCACGGCTATTGCAAAGTGAGTGGGTGTTTCCAAAGCAAAACACAATACTTTAGTACAGAAGGAACAACGGCGATATTTTGTCTGATGTAGGTATGAGGCTGGATCTTTTGGTGAGGTCCTGCCAGAATTAGATGAAAGCAATCCCTTAAAAAGATGGACGTATCCCCAAAACTATCAGCAGAACAACTCTGTGTTTCAATTTTCTATGATGGGACTTGAAGATCCTAACAGGCGTCTCCAACGCCAAAGAGTCTGGAAGCCATTATCAAAATTCACTGAAGAGAATACAGGCTAATCTGATTAATGTGCAACTCAGAAGCAGAAGGCCAGCTGCCAGAGAGAAGCACATTCTGCTAT +>mm8 +AGCTGCGTGACATTTATTTTGTCTTGTTAACATTAATATCTGTAGAAACATTTTTATTGTCAGTATAAAAATTAACAGGTTTTATTAAATACTTTCTCCAATTCCAAAACACATAAAATCAGTGTAATCTGCATACATGTCGCATGACTGTAGCAAAGTGAGTGGGCGTATCCAAAGCAAA--ACAATACTTGAATACGAAATCAACAAAAGCGTTATCTTGTCGGATGTAGCTATTAGGCCAGATCTTTTGGTGAGGTCTTGTCAGAAGTAGCCAGAAGCAAACCCTTAAGAAGATGGAAGGAGGTCCCAGACTCTCAACCGAATGATGCTGTTTTGCCATCCTTCGAGAGGA----TGGAGATTCCCCAAAGGGCTCTTGGTGCTGAAGAATCT-GAAGCTGTTATTAAAACTCACTGAGA---AGCAAGGCAAACGTGATGAATGTGTAACCC--GGGCAGAAGGCCAGCTGCCGGACG-AGA-GGACCCTGCTAT + +>hg18.chr10(+):123229123-123229622 +GTTACATGGTGGCTTGTGGCAGTCCACTGCTCCAGAAACCTTCTTCTCCTCCTGGGGAAGATTACAAGTTTTCAACTGTATAAATCTTTACACATATGCTGATTACTTTTCCAATTATTTACTCCTCTGATCCATATATACAAGTGGAGACAACAAGCTCTGGGAGGCATGGTCTCCCTGCTCAGTGTAGCTAGGTTCCCAGTGCTGTCCTGTTTGGGGACAGGCAGACACAGTCATTCATGTTTTAACACTGCCGTTTATGTGTGGATACTGAGGAAGGCATGGTTCGTAAGGCATGGGGTCTGGAGAAAAAACAGAATCATCTCCTGAAGAACAAGAACTTCTTGTGTCAGGGTAACTAGGTGAATACTGTTCGAGAGGTTGGCTGAGGTCCAAGTATTCCTGAAAGAAGGGAAGAGAGACGTTTTATTTCATCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGACTGAGGTCCAAGTATTCCTGAA +>mm8 +GTGGCATGGTGGCTTGCGGCTGTCCACTTATCAGGAAACAGTCTTCCTTTCCTGGTTAGG-TAACATGTTTCCAACTGTATAAATCTTTACACACGTGACAAATATGCTTCCCACTATTTACTCCTCTGATCCATATATACAAGTGGAGGCGACAGGCTCT-GGAGGCACAGCCTCTCTGCTCAGTGTAAGTAGGTTCCTGGTGCTGTCCTGTTTGGGGACAGGAAGACACATTCACTCATGTTTTAACACTGCCGTTTATGTGTGGATACTGAGGCAGACAGGGTTCATAAGGCATGGGGTCTGGAGAAAACACAGAATCGTCCCCTGAAGAACAAGAGCTCCTTGTGTCGGGGTAACTAGGAGAATACTGTTCGAGAGGCTGGGTGAGATCCAAGTATTCCTGCAAGAAGGGAAGAGAGACGTTTTATTTCACCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGACTGAGGTCCAAGTATTCCTGCA + +>hg18.chr10(+):123229361-123229860 +CATGTTTTAACACTGCCGTTTATGTGTGGATACTGAGGAAGGCATGGTTCGTAAGGCATGGGGTCTGGAGAAAAAACAGAATCATCTCCTGAAGAACAAGAACTTCTTGTGTCAGGGTAACTAGGTGAATACTGTTCGAGAGGTTGGCTGAGGTCCAAGTATTCCTGAAAGAAGGGAAGAGAGACGTTTTATTTCATCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGACTGAGGTCCAAGTATTCCTGAAAGAAGGGAAGAGAAGAGTTTTATTTCAAACACAAACTCTTGAGATGTGGGTATTGGACGTGGGACAGGACAGGAGACCCCTAGAAGGTGAACAGAGACCCAGCCCACCTGACTTCCACGAAGACCTCCCTGAGACCACGTCTGATGTACCCCAGGCTGTCCTTAGCTTTTCTCTTGGAATCCATCATAAATCAACTATTGACAGGTAGAGAACAATAAAACCTAGTTGAGCTATAGGT +>mm8 +CATGTTTTAACACTGCCGTTTATGTGTGGATACTGAGGCAGACAGGGTTCATAAGGCATGGGGTCTGGAGAAAACACAGAATCGTCCCCTGAAGAACAAGAGCTCCTTGTGTCGGGGTAACTAGGAGAATACTGTTCGAGAGGCTGGGTGAGATCCAAGTATTCCTGCAAGAAGGGAAGAGAGACGTTTTATTTCACCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGACTGAGGTCCAAGTATTCCTGCAAGAAGGGAAGAGAAGAATCTCATTTTAAACAGAAGCTCCTGAAAAATCTCTATCAGATTTGGGAAGGGACGGGGAACCCCCGGAAGCTTTCCAGAGGCCTAGCTCACCCCAGTG-TACAAAGACCTCCCTGATACCCCACTCCATTCACTCCAGGCTACCCTGAACTTTTCTCTTACGACACAGCATCTATAAACCACCAGCAGGCAGCAGACCATAAAACATAG-TGAACTGCTGGT + +>hg18.chr10(+):123229555-123230054 +CATCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGACTGAGGTCCAAGTATTCCTGAAAGAAGGGAAGAGAAGAGTTTTATTTCAAACACAAACTCTTGAGATGTGGGTATTGGACGTGGGACAGGACAGGAGACCCCTAGAAGGTGAACAGAGACCCAGCCCACCTGACTTCCACGAAGACCTCCCTGAGACCACGTCTGATGTACCCCAGGCTGTCCTTAGCTTTTCTCTTGGAATCCATCATAAATCAACTATTGACAGGTAGAGAACAATAAAACCTAGTTGAGCTATAGGTGCTGGGCAGGCAACTCGGCTTCACACGGACCTAAATAACCCGCTGAGTCTACACCACCTCCTCACTAGAGCCCTTGCTTCAAATGCGAGCCCCAGCAAAATGAAAACCGGTAACATGTTGTGGGTCCCCAGACCCCCTTTAAGTAGTTGAGACTATGAATATTTATTTTCTGAATTACATTTTACTATTGTAGT +>mm8 +CACCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGACTGAGGTCCAAGTATTCCTGCAAGAAGGGAAGAGAAGAATCTCATTTTAAACAGAAGCTCCTGAAAAATCTCTATCAGATTTGGGAAGGGACGGGGAACCCCCGGAAGCTTTCCAGAGGCCTAGCTCACCCCAGTG-TACAAAGACCTCCCTGATACCCCACTCCATTCACTCCAGGCTACCCTGAACTTTTCTCTTACGACACAGCATCTATAAACCACCAGCAGGCAGCAGACCATAAAACATAG-TGAACTGCTGGTAGCAGGTTGCCCACTCTGCTACA---GGACCTCGGTGACCCACTATAT--ACAGC-CCTCTTCACTACGGCTCACAATCGGAGTTTAAGACCCAGTGAAGT--AAACCCAG-----------------CAGGA-CCCTTTACAAAGCCAGGAC-ATGAATATGTATTTTCGGAATCACATTCTACAGTTGTCAT + +>hg18.chr10(+):123231339-123231838 +ttttattttttttttttttgagacggagtctcgctctgtcgccaaggctggaatgcaatggcatgatctcggctcactgcaacctccgcctccccggttcaagtgactctcctgcctcagcctcccggagtagctgggattacaggtgcacaccaacacgcccggctaattttttgtatctttagtagagacagggtttcaccatgttggccaggctggtctggaactcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgcctgaccAACTTTTCCCAGTTTCTCAATGAAGCCATAAACTTTCAGATCTGATAGGAAAAAAACAGGGATATCAGTAGATTCCAAGTCTACAGTTAAAGGAACTTATACTAGAAACAACAATTTTGGCAGAAGAAGAAAGTTGGTTTCTTCCCCCCCTTGAACCGTTCCTTTCCTTTCAACTTCTGAAGGTCAGCTGTATTCATT +>mm8 +---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTTTCTAAATGAAGCTGT-AACCTTCAGATCTGACTGGGGGT--GGGGGGCTATCACTGGATTCCAAGCCTAGGGTTAAAGGAACTTAGGCTAGAAACAACAGTTTTGGCAGGAGAAGAAAGTTGGCTTTTTTTCCCCCTTGAACTATTCCTTTCCTTTCAACTTCTGAAGGTCAGCTGTGTTCATT + +>hg18.chr10(+):123231360-123231859 +gacggagtctcgctctgtcgccaaggctggaatgcaatggcatgatctcggctcactgcaacctccgcctccccggttcaagtgactctcctgcctcagcctcccggagtagctgggattacaggtgcacaccaacacgcccggctaattttttgtatctttagtagagacagggtttcaccatgttggccaggctggtctggaactcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgcctgaccAACTTTTCCCAGTTTCTCAATGAAGCCATAAACTTTCAGATCTGATAGGAAAAAAACAGGGATATCAGTAGATTCCAAGTCTACAGTTAAAGGAACTTATACTAGAAACAACAATTTTGGCAGAAGAAGAAAGTTGGTTTCTTCCCCCCCTTGAACCGTTCCTTTCCTTTCAACTTCTGAAGGTCAGCTGTATTCATTTAAGTGCAATCTCTTCCTTTA +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTTTCTAAATGAAGCTGT-AACCTTCAGATCTGACTGGGGGT--GGGGGGCTATCACTGGATTCCAAGCCTAGGGTTAAAGGAACTTAGGCTAGAAACAACAGTTTTGGCAGGAGAAGAAAGTTGGCTTTTTTTCCCCCTTGAACTATTCCTTTCCTTTCAACTTCTGAAGGTCAGCTGTGTTCATTTAAATGCAAGCTCTCCCTTTA + +>hg18.chr10(+):123287470-123287969 +GTCTTCAATGTTTAATTAAAATGGCCTACTTATCTGTGCACTCTGACAAAAATGTATTTATAAGCTCATATACATGGTTCCCTTTGCACAGAGGAAATAGATGCCAGGAACAGACACTGAATTGGTACCGTCTAATGACTTTCTTGTGATGGAAGTGAAGGGCCCTCAACATTCACCTTTTTCCAGCCAGCCACAGGCTCAGTCCTCAGACCTTTTCCTTTACTCTTCAGCTGGCCTTCTACAGTTGCCCTGTTGGGGAAATGATGCTTCTCTTTTAAAACCAAAGGTCTGCTACAGCACATCTGTACCCTTTTCACCTGCCCAATTAACATTTTCAGAGTAATCTCAGCTTCCAAAATGTCAGACATTTCATACCACGTCCACTTTACACAGATGACGCTTGGGAACCATGAGGATCATGCAAAGCTCATAAACCCTGGCTGCCTGGAAAACAGAATATTGTCAGATGACAGAAGCAGCCTTGTAAAATGATAGTAGA +>mm8 +ACCTTAAATGGGAAATGAAAATGATCCGCTTATGGGTGCACTGTGACAAAAACCTATTTGTGAGCTCAAACATGTGGTTCCTTTGGCTCAGA-GAAATGTCTTCCAGGAATAAGCATTGAGCTAATTTCTGACATTGACTTTTTTC----------------------------------TTCCAGCCAGACAGGGACTCAGTCATTAAAT-----CTGTTTCTTTACTCTTTGTATGATA-AGTTGCCCTTCTTTAACCTTGTTGCCTCTCTTTTAAAAACAA-----------------------------CCCTTGCACGTACCAAGAATTTCAACATAATCTTAACTTCCAAAA--TGAAATGTTTTATACCACATCTACCTGATAAAAATAATGCTTAGGGGCCAAGAAGACTCCCCCAAGCCCATAAAACCTGGCTACCCAGGAAACAGAACACAGTCATACGACAGACGAGACCTTCTCAGATGACATTGGA + +>hg18.chr1(+):92746841-92747340 +TCTTATAAAATGGAAAACTTTAATTGTTTAAAGAAAAGGCACAAGTAAACATTTCAGGTTATCATACAATGTTACAATAAAAAATTCCAATAGCAAAATGAAACACATTATAACTTTGCTTCTTGGTAGTATACTGAATGTATTATTCTATCATCTCCTCTTTGGAGTAAAAAGAAGGGATAGGCAGATCAATGGATGTGATGTAAAAACTTGGATCATAAATAGCATCCACTATACCTTTAACCAGAAATTAAACTTCAGTAGaattaaaattaatttttaaaaCTTAGTTTTGTTAATAATAGAGCAGCAGTAACTTTCAAGCTAAAACTCATTGTTTTGGTAAGTAAATAACTGATTTCATGAAATGTTCGCTGTCAATGTCTGGTATGTTAATATACATTAATCAAGCTGGTCATGAAACAGTTTTACCAAAATATAATTCATATACTTATTTTACTTTAAACCTGAATATTACAGTACATTATATAAAAGATAA +>mm8 +TCTTGTAAAATGAGAAACTTTAATTATTTAAAGCAAAGGCACAAGTAGACATTTTAGGTT---ATACAGTGTTACAATAAGAAAACCCCGCAGGACAATGAAATACGTTGTAACTTTGCATGTCC-----------AATGGATTACCATGTCAGCTCTTCTCTGGAGGGAAGGGG-----TATGTAGACCCACAGATGT------AAAAGTTGGATGTTAAATAGCATCTACCCTATTGCCAATAAGaaatttaatt--aatagaattaataagaaattttaaaaattGTT--TGCTAAT-CTAGAGCAGCAATAACTTTCAAGCTAAAACTCATTACTTTAGTAAGTAAGTTACGGATTCTAC-AAATGTTGGCCATCGATGTCT----TGGTATTGTGCAATATCCATGCTGGCCATGAA--AAGCTTACCAAAACATAATTGATATCCTTAACT---TTTAAAACTGAATATTACAGTGCATTATGCAA------A + +>hg18.chr1(+):92860438-92860937 +tacgcattaaaaaatattattttaagaaggggtccacaggttccagactgccaacagtgttgatagcagacacaaacacaaaaacggtaagaacctttgTACTTAagaaactcttgaagatatacacaaggaaacataagcaagaatgttcagagtagcactgtttgcaagagcaaaaaggagagtggatcaataaattgaggtatagtcactgacagacttttctaaaagtccttaaaatgacagaactggagttacatgtataaacatggacaaatttcTTAATCTAAATACATGGGTGTTTGATACAATAATCTTTAGATTACTACACACCACCACCATTACCCTATACtatttttatttatttatttttCATTTATCAATGTAAAAATTTCATGGATTACCACCAGTCCAAATACTGGCATTTAGGAACCAGTGCCTATTACCATCCTGCTTCCAGCAAAATCCATCCAAAATCACACTTATTAGTCAGCAATGG +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr3(+):151165384-151165883 +GTTGGAATAAATTTATTTCATCTGTCTGTAAACAAGGTGTTTAATAGTTATGGCATTTTTTTAAATGCATATTAAATCAGATGAGTTAGACTGTATCCCAGATGTAACAAAGTGCAGGGAAAGAAATGGACAAATCAGCAACAAGATTTGTTTTTAAATCTGTACATTATCCACAAGGCCCAAACAATAGAAGCAAATACTAGAATGTCCCTAAAGTAGTGCCATTCGAAAGAAACCCTTAATAGGTCAGTTAAAATCCATCTCACAATAGCAACAGTTCATTTTAACAATAGTATGGCACAGAATACATATGAAAAAAATTCATCACAAGACAGCCAAGTCCACAATAATGCAACTTCATATAAAAACTCAAGCTGCAAATAAAAATTGGTCCTATGAAGAACAAACTGGACACACTCCAGATGGTTATGTTGGGATACCTAATGTCCATAATGGCAGCCTTTTACAATTTTACTAAAGAGTAGAGCTGGTGTGCAAA +>mm8 +GTTGGAATAAATTTATTTCATCTGTCTGTAAACAAGGTGTTTAATAGTTATGGCATTTTTTTAAATGCATATTAAGTCAGATGAGTTAGACTGTATCCCAGATGTAACAAAGTGCAGGGAAAGAAATGGACAAATCAGCAACAAGATTTGTTTTTAAATCTGTACATTATCCACAATGCCCAAACAATAGAAGC-AATACTAGAATGTCCCTAAGGTAGTGCCATTCGAAAG--------------------GAAATCCATCTCACAATAGCAACAGTTCATTTTAACAATAGTATGGCACAGGATACATATGAAAAAAATACATCACAAGACAGCCAAGTCCACAATAATGCAACTTCATATAAAAACCTAAGCTGCAAATAAAAATTGGTCCTATGAAAAATAAACTGGACACACTCCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCC-TTTACA--TTTTCTCAAGAGCACAGCTGGTGTGC-AA + +>hg18.chr16(+):56546748-56547247 +CAGAGACCTCCAGCTCCCATCACCCCTGAAACAAAGGAGAAGACAGGGTGGGTGGCTGGGTGGACAGGCGgagggaatgagtgagtgagtgagtgagtggatgagtgaatgaatgGGGAAGGTAAGGGACACATATCCCCCAGCCTCTCAGAGTCTCCCCATGACATGGGACGtgagtggaatggtgtctcccaaaaagataattgcaagtcctaaccccattacttgtgaatgtgaccttatttggaaatagcttctttgcaggtgtgattaagttaaggatctcaaagtgagatcatcccggattgagggtgggccctaaatccagtgactgatgtcctttttaaagaacggagagggaggcttgacacacacagacacagaggtaaaggctgtgtagagacggaggcgggcactggaggacagccagaagccaaggtttgccaaggaccgcaagtggccaccaggagcaaggagagcagcatgggcatgtctcgct +>mm8 +CAGAGGCCTCCAGCTGCTGTCGCCCCTGAAACAAAGGAGGTGACAGAGTAGGAGGATGGATGGATAGACAGATGGAAtggatggatgagtggatgagtggatgagtggatggatgggAGAGGAAGTGAACATGTAT-CCCCAGACCCTC--AGTCACCCCAT-------GTAGCGGATTAAAAAGTGTC-CCTGAAAAGACATGCCTAGGTCCT-ATTCTATCCTATATAAATGTGACTTTATTTGAAAATACAGTCTTTGAGAATATTATTGTCCTCAGAATCTCAAAGCAAAAGACTTCTGAATTTAGGGCAGGCCTTCCCCC-AGTGACAGTCA----------------------------------AG---GACACAGGGAGTAA------------------------ATAGAAGGACAGCTGGAAGCCAAGGAGGCTCAAG------------------GGAATCAGGAGAGCGGCAAGGACATTCCACACC + +>hg18.chr16(+):56475004-56475503 +tttgagatgaggtctcgctatgttgcccagtctgctctccaactcttggcctccagtgatcctcctgcttcggcttcccaaagcactgggattataggcatgagccaccatgcccggcAGTGAAGTATTTTCTATCCTTGAAATGTGTTAGACAAATTCCTGAGGGGAAACCCCACACATTCAATAACACTTTACTTTTTCAGCAAAGCTTCCCATGTATTGGAGCCTCATTTTATCCCTCACCCATGAACTTTAAAAGTGGAAAATCATTTTGTTCTTAAAAAGAGGAACAGTCAGGAAAAGGTAGGGCTCTCAAATGATAGTGAGAGCTCAGGGACTCGAACACTTGATGCAACTTGTCGAGCTCAGGCCCAGCCCCGCGAGGAGCTGAGTCGGGGCTGGCGTGCTGGCGGGACGGTCAGAGCTGCAGCCACTGAGGTCACGACTACGGAAAAGCATCTTCTCTTGAGCCGTGGGGGAAGGTGGGGCGCTGGGGCGC +>mm8 +---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGACCCTACCAAGTCATCAACCCTTGATTTGTCTAGTAGAGTTCTCCTTGTGTTGGAGCCCTCTTCTAGTCTCTCCTCAAATCTTTGAGAAGTACAAGGCGGTTTTCTTCTTGAAAATAGCAACCTCAGGAAGGGAGCAGGGTGCTCAGGGAATGGCAGGAGCTCGAGGGCACTACCACCTGGTGAAATTTG---AGCGTTTCTACAAGCCTGTGAGAAGGCGCCCTTAGGCTGGGACGCT-----------------------------------------------------------------TGGCGAG---------GCGGGGGTTC + +>hg18.chr8(+):145589254-145589753 +CAAGCAAAAAATGTTTTTCCTTGTGTTTTGTACAAAAAGGGGGTGGGAGGTAGTTCCGTGTGCTGGTGGTGACGGCATCCACGGGGCTAGAAGTGGGCGGTGACGCGGTCCGTCTCCAGCAAGTCGTCCAGGATCTGCAGGGGATGGAAgggtgggtgggtgggtgggtgggGATGCACACGGAggggcggggcgcgcggggggcggggcgcgcACTCACTATGTCTGGTGTGGTGCCGATCTTCTTGGCTAGCTCGCTGCGCTCCATGGTGCTCAGGTACAGGTAGCGGTTGAGCAGCTCCCCATCCAGCACGTTGCGCACGGCATTCTGGAGGGTGCGGCGGTCCACGTGCAGCATCCTGGGGCGTACAGGCACAGGTGTCAGGGCAGGCTGGGGTGGAGGGGGTGCTGCACGCGGGCGGGGCCGGGGCTCACCGGAAGGCGCGGGGGTTGAGGCCGGCGTGGTGTGGCAGCATGGTGGTCAGCGCGTTCTGCAGCA +>mm8 +GAA---AGAAATCGTTTTCTTTGTGTTTTATACAAAATGGTAGAGGGAAGT------GTACAACACCAGA-GCAGCATCC-TAGAGTTAGAAGTGAGCCGTGACCCGGTCTGTCTCCAGCAAGTCATCCAGGATCTGTGGGTGATGGA----GAGGTAAAGGTGTAGACAGGAA---GGGTGGTGAGGGCGA--GGCCGAGGGCGAGGGCGT-TACTCACAATGTCAGGCGTGGTACCTATCTTCTTGGCCAGCTCACTGCGCTCCATGGTGCTGAGGTATAGGTAGCGGTTTAGCAGTTCCCCATCAAGGACGTTGCGCACAGCATTCTGCAAGATGCGCCGGTCTACGTGCAACATTCTGGGGTG-GTAGACATAAAGGTCAGGGCAATGTGGAGTACAGGGTGAGAC---CGGGGAAGGGGC--GCACTCACCGGAAGGCGCGGGGGTTGAGGCCAGCGTGGTGGGGTAGCATGGTCGTCAGTGCATTCTGCAGCA + +>hg18.chr1(+):159899157-159899656 +TGGTAGGTGGCCTGGAGTCCCCATGCTCAATTTCAAGAAGCATCCAGATTCCAGGGCCTGGGTCTCCAAATGGAAGTAGAAGTACTAGAAGATTGCTGGTGCACGCTGTCCTGCATCACCCTTTCTCAGGAGGATAGAGACTGAAACAGGAGGTTCTGAGCTGAGTTTTGGTGACCATTTCCCTCTTTCTCCCAGAGGCCCAGGCCAGCTGTGGCCTCAGAGGAAGAAGAAGGGAGTTGTTTCCCTAGTTTCTAAAATTTCTGTGAATTTGAACATGGGCTACACCAGATTTATTCTGGGAAGCTCTGAATCTTCTAGGAGGGAAAGACTGAGAGGAAAGAGGGTGGAAAGGGAGGAGCCTGTGATAAAACAGAACATTTCTTTTTCACTTCCCCTTTCAGACTCCAGAATTTGTTTGCCCTCTAGGGTAGAATCCGCCAAGCTTTGAGAGAAGGCTGTGACTGCTGTGCTCTGGGCGCCAGCTCGCTCCAGGGAGTGA +>mm8 +TGGTAAGTGGTTGTGGGTACCTTTATTCAGTTTCTGGAGGAGTCCAGATCCCACAGACTGGACCTTC---------------------AAGACTCTTG-------CCATCCTCCAT------------------CACAGACTGAGGCAAATGACTCTGAGCTGCGTTGGGGTGAAGTTTTCCCTCTCTGTACCAGACGTCCAGGTCAGCTACGGCTCCAGCAGAACATGAAGGGAGTTGTTTCTC-AGTGTCTAAA--------AAATTGTGATTTGAGCTGAATCCAGTTTATTCTGGTAAGTCCTGAGTCTTCTAATAGAGAACGGATGAAAGGAAAGAGGGTGGAAGGGGAGGAGCCCAGGATTAAACAGACCGTTTC-TTTTCACTTCCCCATTTGGACTTCACAATTTGTCTGTTCTC-TGGGTACTATCTGCCAAGCCGGGAGGGAAGCCTGTGCCTGCAG-----------CTGACTCGCTCCAG-AGCTGA + +>hg18.chr1(+):159899076-159899575 +GCCATCCTGACATACCTCCTTGTCCTTGTTCCACAACTCAGCAGTGAGTCTGGGATTATGACAATAGAGAAAATTAAATGATGGTAGGTGGCCTGGAGTCCCCATGCTCAATTTCAAGAAGCATCCAGATTCCAGGGCCTGGGTCTCCAAATGGAAGTAGAAGTACTAGAAGATTGCTGGTGCACGCTGTCCTGCATCACCCTTTCTCAGGAGGATAGAGACTGAAACAGGAGGTTCTGAGCTGAGTTTTGGTGACCATTTCCCTCTTTCTCCCAGAGGCCCAGGCCAGCTGTGGCCTCAGAGGAAGAAGAAGGGAGTTGTTTCCCTAGTTTCTAAAATTTCTGTGAATTTGAACATGGGCTACACCAGATTTATTCTGGGAAGCTCTGAATCTTCTAGGAGGGAAAGACTGAGAGGAAAGAGGGTGGAAAGGGAGGAGCCTGTGATAAAACAGAACATTTCTTTTTCACTTCCCCTTTCAGACTCCAGAATTTGTTTG +>mm8 +GCTGTTCTCACATATGGCCTAGCTTTTGGTCTACAATCCAACAGTGAGCTGGGGATTGTGATAACAGAGAAACCCAGATGGTGGTAAGTGGTTGTGGGTACCTTTATTCAGTTTCTGGAGGAGTCCAGATCCCACAGACTGGACCTTC---------------------AAGACTCTTG-------CCATCCTCCAT------------------CACAGACTGAGGCAAATGACTCTGAGCTGCGTTGGGGTGAAGTTTTCCCTCTCTGTACCAGACGTCCAGGTCAGCTACGGCTCCAGCAGAACATGAAGGGAGTTGTTTCTC-AGTGTCTAAA--------AAATTGTGATTTGAGCTGAATCCAGTTTATTCTGGTAAGTCCTGAGTCTTCTAATAGAGAACGGATGAAAGGAAAGAGGGTGGAAGGGGAGGAGCCCAGGATTAAACAGACCGTTTC-TTTTCACTTCCCCATTTGGACTTCACAATTTGTCTG + +>hg18.chr4(+):5763326-5763825 +CGTCTCAGTGGGGTCTGGGTGTAAGGATCCCTTTACCCATCCTCCTAGTGGAGACTGAGTGTAACGGTGTCTCCACCCATTGTCTCGACCTTCCCTGGGACAAAATAAGATTAAAACAGGAGTCTTCGCGTGAGCAAGTTCAGAGGCGTGGAGGGCGGTGTGTTCCCGGGAAGGTTGATGGGTAGAGGTTAGGGGCAAGGGCAGGGGGTTGGAATTGCATtgatcccagcgtcttcatcaggaggatgggcggagcacccaccgcagagggttattgagaaagttaatgagatcattaagctaaatgcgtagcatattctaagcctcaaaaaaCTTAAAGGAGCCTTCTAAGCCTCAGTAAAGTTAAAGGGGTGGAAACCGGGCCCCCCTCCGGAAGGGTCCGGGGCTGGGAGGCGCGTCTGTCTCTGGGCATGCTCAGTGCAGGGGCAGGGCTGGGGCGGGGGTGGCTGAAAGTTTTGAGCGGTGATCCAGGCTCCTC +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCCTCGGGCTGAAAGGCGCGCCCCG-GCTGCGCATGCTCAGTGCA-CTGTAGGGATGGCCCGGAAA-GGCTGAAAGTTTGGGGCGGCGGTCCAAGCTCCTC + +>hg18.chr2(+):70753968-70754467 +GAAGAGAACCAGCCAGGAGCTTTGTGTCGTGAGCACAGAGCACATCAACGGGTAAGAGGTGGACCCACAACCACCAACTCCCCTTATTTTATTTTTTGCTGACTCCCCTTAAAAACACCCATGATTTCTTTGCATGTAACTATTGTTTAATTCATCAAATTTACATTTTCTGTCCAAACAATCCCTAGGGATAAAAAGTGCCATGTTCCTCTATTTGCTTTTCAATTGGCACATTAGAGCTCCAAGCAAGCCAGCAAGGGttttttggtttttgctgttgttgtttgagatgaagtctccctctgtcacccaggctggagtgcagtggtgtgacctcagctcactgtaacctccgccttctgggttcaagcaattctcctgccacagcctcctgagtatctgagatttttggcgtgtaccaccatgcctggctaatttttgtatttttagtagagacggggtttcaccatgttggccagactggtctcgaactgctgac +>mm8 +---------TGGACAAGAC-CTGGTGCTGCAA--------CACAAGCACAGAT-GGAGGCAGAGTCCCCACC-------------------------GCTGGCTCTCCAGAGGGTCACCTGGGGCTTGTTCTCAGGGGATTACCAGTTAACTCAGCTAGCTTACAACTTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr2(+):70744123-70744622 +TCTTTTTCTTCTTTGAGGGAGACTTGGAAGGTGAGCCCTCTGGGGACATGGGGCCGCTGGTGACCGACTCGGTTTTGTCCTTAGAGGTATCAACATCCGTGTCAGCACTGGTGGTCATCTGGCTCAGGCCTTTGCTGAGGATTTCCTCTGCCGTCTGCTCCTCCTCCCTCCCGTTGACCACCACCCCTTCCGGCTGGGTTGTTTCGGGCTCTGTGGTGGCGGCTTTGCTTGTTTCTGTCTTCTTAGTACCTTCTAGAAAAAGATCAAAAGATATGACCTGTAAGATTTCATTCAGGTGACAGCTTCCACCTGGGGCTAACAGAACCATTTCTAGGGAATTCTATAAAATCAATCCAGAGCGAGGGGAGGGCCAGCCTGATGTTGAGGGATGGCTACCAGAGACAGATGGAAGGACTGGGTTCTGATCTGCACCTTCCATGTGGCCTGTCCTGGGAACACCCCCTTGCAGGCTGGCAGCTCTGGGCTCTTGTCTATGAAT +>mm8 +TCTTTTTCTTTTTGGAGGGTGACTTAGAGGGCGAGCCCTCTGGGGACAAGGGGCCACTGGTAACTGACTCGGTTTTGTCCTTGTAGCTGTCGCCATCAGTGTCAGCGTTGGTGGTCATCTGGCCCAGTCCTTTGCTGAGGGCCTCTTCTACGCTCGGCTCCTCCTCCTTCCCATTCACCACCAGCCCTTCTGGTTTCACTGGCTCAGGCTCTGTGTT---GGCTTCGCTGACTTCTGTCTTCTTGGTA---TCTAGGAAAAGACCAGAAGACCCAACCTGTAAGATTTCATGAAGGCG--AGTGT----------TCAACAGAACCACTTCTAGGGAGGTCTGGAG-------CCAGG--GAAGTGCAGGCTGGCATGGGGTGGGAGAAGGATCCTGGAACAGAGGAGGGGTGGCGT---------TCTCACCTCTCACTA--CCTGCCTGGGGAACACCCATTGCGCAGGTGGTAACTCTGGGTCCTTGTCTACATTT + +>hg18.chr2(+):70744138-70744637 +AGGGAGACTTGGAAGGTGAGCCCTCTGGGGACATGGGGCCGCTGGTGACCGACTCGGTTTTGTCCTTAGAGGTATCAACATCCGTGTCAGCACTGGTGGTCATCTGGCTCAGGCCTTTGCTGAGGATTTCCTCTGCCGTCTGCTCCTCCTCCCTCCCGTTGACCACCACCCCTTCCGGCTGGGTTGTTTCGGGCTCTGTGGTGGCGGCTTTGCTTGTTTCTGTCTTCTTAGTACCTTCTAGAAAAAGATCAAAAGATATGACCTGTAAGATTTCATTCAGGTGACAGCTTCCACCTGGGGCTAACAGAACCATTTCTAGGGAATTCTATAAAATCAATCCAGAGCGAGGGGAGGGCCAGCCTGATGTTGAGGGATGGCTACCAGAGACAGATGGAAGGACTGGGTTCTGATCTGCACCTTCCATGTGGCCTGTCCTGGGAACACCCCCTTGCAGGCTGGCAGCTCTGGGCTCTTGTCTATGAATTTAGATGGATATTAA +>mm8 +AGGGTGACTTAGAGGGCGAGCCCTCTGGGGACAAGGGGCCACTGGTAACTGACTCGGTTTTGTCCTTGTAGCTGTCGCCATCAGTGTCAGCGTTGGTGGTCATCTGGCCCAGTCCTTTGCTGAGGGCCTCTTCTACGCTCGGCTCCTCCTCCTTCCCATTCACCACCAGCCCTTCTGGTTTCACTGGCTCAGGCTCTGTGTT---GGCTTCGCTGACTTCTGTCTTCTTGGTA---TCTAGGAAAAGACCAGAAGACCCAACCTGTAAGATTTCATGAAGGCG--AGTGT----------TCAACAGAACCACTTCTAGGGAGGTCTGGAG-------CCAGG--GAAGTGCAGGCTGGCATGGGGTGGGAGAAGGATCCTGGAACAGAGGAGGGGTGGCGT---------TCTCACCTCTCACTA--CCTGCCTGGGGAACACCCATTGCGCAGGTGGTAACTCTGGGTCCTTGTCTACATTTTGAAATATATGTTGG + +>hg18.chr2(+):70742773-70743272 +AAGAGAATGGATTGTCTAATTTTTAGGAGCCAACAAATGCTCATTAATCAATGCCCCACGGAAGAACATGAGAAGACAGTGTTGGCATTTAAAACAATAACTGTGGCCATTACCAGGCCCCAGGATGGACAGATAGGGACAAGGACAGGGATACCCAGCATTTCTCTGAGAGCTGGTGCAAGAGGATTAATCCTGAAGGGCTCATTTCTGATTCTCCTCTGCTGGACAAAGAATGACTGAGTTGGAACCTCAGAGGGTGCAAGTCAAGGTGCCAAGAGTAAGATGCCAGTTTCGGTCTGTAAGCAAGTGTTTCTGGGGGTGAGGGAAGGTCAGGGGAAACCTGACCACTGGACAGGAGTGAGGCAGGTACAGTGCATTGCTCCAGGTGTCATGCAAAGCTAGAAAGTCAGCATTTCCTCTGTTGTTTTGATCCTCCTTATACAACCCAAAGCCAACAGAGGATTTCAACTTCCCCAAATTTCTGCCCTGAGCATTAAAC +>mm8 +AGGAAGATGGATTGTC-------TTGGAGCCAGA-AGTGTTCACTAACCAATCCTCCTTAGGAGGATATGGGAAACCAGTGTTGGCGTTTAAAATAACAGCTCTGCCTATTGCCAAGCTTCAGGATGCA-AGAGAGTGATGGGCTTGGGAATGCCAGCCGTGTCTTTAAGAGTTGGTGAGAGAGAATTAACCCCAAAGGACTCATTTCTGACCATCCTCTCCTGTACCC--TCTGACTGAGTTGGGACC-CAAAAAGCCAAGGTCAAGATGCCAAGAGCAAGAT----TTTCTGGTCTGTGGGCAAGAGCCCTTGGGGATGTGGGAAGGCCAAGGGACACCTGGCTGCCAGGCAAGAGTGAGGCAGATACA-------GCCCTGCATAGCATGCAAAGCCAAAGGGGTA----------------TCTGA-CCTCCTCACACAACTCAATGCCAGCAACAGATTTGGATGTCCCAGAATTTCTTCCCTGAGCATGAGAC + +>hg18.chr2(+):70744065-70744564 +CAGGACTCCACTTTCTCCTTCTTTTTGCTCTTTTTCAGGAAGGAGGGGGTTCGGAATTTCTTTTTCTTCTTTGAGGGAGACTTGGAAGGTGAGCCCTCTGGGGACATGGGGCCGCTGGTGACCGACTCGGTTTTGTCCTTAGAGGTATCAACATCCGTGTCAGCACTGGTGGTCATCTGGCTCAGGCCTTTGCTGAGGATTTCCTCTGCCGTCTGCTCCTCCTCCCTCCCGTTGACCACCACCCCTTCCGGCTGGGTTGTTTCGGGCTCTGTGGTGGCGGCTTTGCTTGTTTCTGTCTTCTTAGTACCTTCTAGAAAAAGATCAAAAGATATGACCTGTAAGATTTCATTCAGGTGACAGCTTCCACCTGGGGCTAACAGAACCATTTCTAGGGAATTCTATAAAATCAATCCAGAGCGAGGGGAGGGCCAGCCTGATGTTGAGGGATGGCTACCAGAGACAGATGGAAGGACTGGGTTCTGATCTGCACCTTCCATGT +>mm8 +CAGGATTCCACCTTCTCCTTCTTCTTGCTTTTCTTCAGGAACGAGGGGGTTCGGAATTTCTTTTTCTTTTTGGAGGGTGACTTAGAGGGCGAGCCCTCTGGGGACAAGGGGCCACTGGTAACTGACTCGGTTTTGTCCTTGTAGCTGTCGCCATCAGTGTCAGCGTTGGTGGTCATCTGGCCCAGTCCTTTGCTGAGGGCCTCTTCTACGCTCGGCTCCTCCTCCTTCCCATTCACCACCAGCCCTTCTGGTTTCACTGGCTCAGGCTCTGTGTT---GGCTTCGCTGACTTCTGTCTTCTTGGTA---TCTAGGAAAAGACCAGAAGACCCAACCTGTAAGATTTCATGAAGGCG--AGTGT----------TCAACAGAACCACTTCTAGGGAGGTCTGGAG-------CCAGG--GAAGTGCAGGCTGGCATGGGGTGGGAGAAGGATCCTGGAACAGAGGAGGGGTGGCGT---------TCTCACCTCTCACTA + +>hg18.chr3(+):172801314-172801813 +ATTTCATTAGCTCTCTCCTTCACCTTGtttattaattctacaagcatttattgccatctcctatgtgccaagcactggtccaggctctggggatacactatgaacaaaatacagtgaagtccctgccccatggagcttacattctagtagggggagacagacaaacacataaatacaaaatatcagagggtTCAAAACAGCTTAGAGGTATCTTGCCTGAATTCTGTTTACTGCATATCCTCATTCTTGGGCAATGATAAAGTGAAGAGAGAGGCCAACAATGGGCTGCAGCAATGTTGctagtcccagctctaccatctacacattgagtggatttaagtgagttctcatctgatctgagcctcagtttcctcatctataaaatggggagaaattggattaaattacttataagggaaagggtcctttcaggctttTTTCATGAGAGTAGGGTGCTGAAAATCAAGAGCCAGTTTGTTGACTCCTCTAAGGtttaaaa +>mm8 +AGCTCATCAGCTCCCTCTCCTGTATAATATTttcactccacaaacatttacccacatgtcctttgtactaggcactgtttcagagtctgaagacaaac-----taaacaacctatgaagtctctgccgtgtccaggtaccattctagtagtgg-----agacaaagaaacaCAG-------ATTACAGGATTCGAAAGAGC--AGAAGACGCCCT------GTCTGAAACCTCCATGTCCTTCGTCTGGGGTAATAATGAAGTGAGGAGAGA---CTAACACTGGGTGCAGGAGT-CTGTT---------------GTACATCTGATGGGCAGGTCTACATCATTACTCCTCCAATGTAACCCTCT---------GCTGTACCATGGGGAGGG-TTAAAGTAAATGATTTATTATAGGTC----TGTGCCAGACCTTTCTAATGAGAACATTTTGTACAAAATCAAGAACCATTTTTTTTACTGCTTTAAGGtt----- + +>hg18.chr3(+):172812085-172812584 +CAGGGATCTTCGACACCTGGAGTCATTTTAGACCTGAAAACAGAAGTTTCCACATTTAAATTTTACACCAGCAGTCACTGGCATACCCCTTCAATAATTTTTATTATATCCTTGTATTACTGGAATTAATTTGATTTTAAAAACTTAAATGGAAGCTGGAGGGTTTGACCTGGTCTAGTCCTAATTCAGTTAAGGACTAGTATTTAATtggctcacgtctgtaatcccagtgctttgagaggccaaggcaggaggatcacttaaagccaggagtttgagaccagcctgggcagcacagcgagacacggtatctacaaaaaatttttaaaaattagctgggtgtggtgacacgggcctgtagtcccagctactcggaatgctgagccaggaggattgcttgagcctaggaattcaaggatgcaatgagctgtaactgcaccactgcaGTTTTTTCTACTGCACGTGACAGTAATAAAAAGCTATTAAAATAAAAAATAtt +>mm8 +CAGAGA--------------AGTCCTTTTAAACCATGGAAGTGTGATACTCACACTTAAATCTGAGACCAGCAACTACGGGA--GTTCTTTGGGTCATATCCCTGTAAT-------AAAGTGAAATTAC-----TTTTAAAATCTTACACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGAT---AGACTATTAAAATACtatgtatg + +>hg18.chr4(+):74565827-74566326 +ttttttatatgttgactgacaggttgttttcatattttggctattgtgaataatgaggtaataaacaccgaagtgcaggtatatcttcTTAATTTTTTAtttttaatttttgtgagtacatagtaggcgtacatatttatatatctttgagatactgatttcacttcctttggatatatatgcataagagagattgcttgattatatCTGTTCTGGCCCTTTGTTCCTTTAACATTTGCAGTATTTTAAGTTTTTTTTTGGTTGTCTATTTGATTAAGTATTGTGCATACTTAGCCTGTGGACTTTTGTTCCAACTCAGTAGATTTTTTCCAGCGAAACACAAAGGTAATTTTTTTTTCTGGTTAATATTTAGCAAGAATTCTGCAGAGTGATCAAAAAAATCAAATACTCAGTATTTCAGAAATAGATTAAATAGGTTACTTTTTTACTGATAATGTGAAAGAATGATATAAAAACTTGATTTTCCTCAACAACATTA +>mm8 +--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTCTTTTC-TTCTTTAACATTTGGAGTATGTTA--------------CAACTTTTGGAAGGAGGATTATTCTTAC----CCTGTGGGCTTTTATTCCAATTCAGCAGATTTTTTTCAGTGAAACACAGCATAAT--TTTTCCCCTAGTTAATAATTACCTAGAATT-TGCACCAGGACCAAAAAA---AAAGCCTATGTATTTCAGAAATAGATTAACTAAGTTACTTTTTAACAAGTTAGGTCAAAGAATACTATAAAAAGTTGTTTTTCCCCAGTCACATTG + +>hg18.chr19(+):10684644-10685143 +CTGCACGCACTGCTGCACAGTGACAACACGGCCGCGCTGCACCACCTCACGGTCCACAACATCGCCTACCAGGTGAGCCAGTGCCCGGGGCAAGGTGGGCGGGGGTGTCCTAGGTGCGTATGCCCCACGCTGACCTCCCCTCCCCGCAGCTGCAGCTCATGAGCGCCGTCCGCACCAGCATCGTGGAGAAGCGCTTCCCGGACTTCGTGCGGGACTTCATGGGCGCCATGTACGGGGATCCCACCCTCTGTCCCACCTGGGCCACTGACGCTCTGGCCTCTGTGGGAATCACACTGGGCTGACCTGGCATTGGGAgagggagggaggaaggaagggagggagggGCTGGAAGATACTGAAGGATTCCTTTTTGAAAGGTTTTTTTTATTGTAACTTACAGAGTGTGTCTGTGTCTTCTTGAGGAAGTGGCCTGTCTGGGTCCCCCTCCCAGTCTGAGCGTCATTGCAGTGGAATATCTCCCCTTCTCACCAATCATAAC +>mm8 +CTGCATGCCCTGCTACACAGTGACAACACTACAGCACTACACCACCTAACCGTGCACAACATTGCCTATCAGGTGACCTGGAGGGCAGGGCGGGTGGGGCGGGGACACTCTTGGTGCTGGTGGCTCACACTGATGCTTCTGCCCTGCAGCTGCAGCTCCTGAGTGCCGTGCGCAGCAGTATCTTGGAACAGCGCTTTCCTGACTTTGTACGAAACTTCATGCGCACTATGTATGGTGACCACAGCCTCTGTCCTGCCTGGGCCGTTGAAGCACTGGCCTCTGTGGGAATCATGCTCACATGACCTGGTTGCT-GGGAAGGACACTGGGGTATGGGGA---------------ATTCTGAAGGATTCTTTTTTAAAAAGATTTTGTTACTATTGTTTTCATCTTGTGTCTGTC--TTCTT-------------------------------------------------------------------------------- + +>hg18.chr19(+):10689340-10689839 +GCAACGAAGTGATATTTATATGAACCAATGGGAAATTCTTAGGGAACGAGGTAGTAGCTCAATCCCCAACACCATTGGTCCACATTGTCTACTGGCACGTCTGCCTGCCAATAAGATGGTGGAACTTCGCCAATGGGCAGAGCCAACGTGCCTTTTTCGGAAACACCCCCTTCCTCTCTTGACAACTTGCTTTCTGCCGCTATTGGCTGTTGCACAACAGTGACGGTTCTTTTGTCCAATAAGTCAGCAAGACGGTCCCCAGGGGGAAGGTTTACTCAACCATAGGCCCGTGCCTAGTTTTTATTGGCTAGTGTATCCGAGTGGCGGTGCAGCAGGCCAGTCGCGTGCGGCGCGAGTGCTTTGGGCGCAGCCCCCGGGGCCGGGGCGGGAGGTCGCTCGGGTCGGGTGTCGCCTGAGAACCGGATGAGGCGGCGACCGTGAGGCCGAGCCGGGAGCGGGCGTCTTGCCGAGGCCCGGGCGGGCGGGGAGCAACGGCTAC +>mm8 +GTAGAGAAGTGATATTTATATCAGCCAATGAGAAATTTTTACGGAATTAACTAGTGTCTGGATCCCTTACACCCTTGG--CAGGTT-------GACGTTTC-TGCGACCAATAAGCCAACCCGAATCACCTAGTGAGCGAGGCCTCAGTGTCTTTTCCAGAGACCCCGCCTTCCCGGTCTGACAACCCG-GTTTGACTTCTATTGGCTTTCACTTAAGAGTGACAGTTTTATTACCCAGTGAATTTGTGAGAT--------------TAGCCCTTC----------CTCGTGCCTT--TTTTATTGGCTCACGTTCTTGAGTGGCAGTGCTTTGAACCAATTGGATATAGCAGTAGGGTTGCGGACTCCGCCCCGGAGGCCGGGAGGGTTGTTCGCTCGGGTCGGGTGTCGCCTGAGAACCGGATGAGGCGGCGACTCTGAGGCCGAGCCGGGAGCGGGCGTCGCGGCGGAGACCGGGCGGGCAGGAAGCAACGGCCAC + +>hg18.chr19(+):10689256-10689755 +GTTTTTCTGATTGACAGATATGGTTCTCAATGATAGTCAAGATTCGGATGTTAAAGCCCGCCCTCTTTTGCCTGGTTGGCTGGAGCAACGAAGTGATATTTATATGAACCAATGGGAAATTCTTAGGGAACGAGGTAGTAGCTCAATCCCCAACACCATTGGTCCACATTGTCTACTGGCACGTCTGCCTGCCAATAAGATGGTGGAACTTCGCCAATGGGCAGAGCCAACGTGCCTTTTTCGGAAACACCCCCTTCCTCTCTTGACAACTTGCTTTCTGCCGCTATTGGCTGTTGCACAACAGTGACGGTTCTTTTGTCCAATAAGTCAGCAAGACGGTCCCCAGGGGGAAGGTTTACTCAACCATAGGCCCGTGCCTAGTTTTTATTGGCTAGTGTATCCGAGTGGCGGTGCAGCAGGCCAGTCGCGTGCGGCGCGAGTGCTTTGGGCGCAGCCCCCGGGGCCGGGGCGGGAGGTCGCTCGGGTCGGGTGTCGCCTG +>mm8 +-----------------------------------------------------------GCTCTCTTTCCTCTTACTGGTTGGAGTAGAGAAGTGATATTTATATCAGCCAATGAGAAATTTTTACGGAATTAACTAGTGTCTGGATCCCTTACACCCTTGG--CAGGTT-------GACGTTTC-TGCGACCAATAAGCCAACCCGAATCACCTAGTGAGCGAGGCCTCAGTGTCTTTTCCAGAGACCCCGCCTTCCCGGTCTGACAACCCG-GTTTGACTTCTATTGGCTTTCACTTAAGAGTGACAGTTTTATTACCCAGTGAATTTGTGAGAT--------------TAGCCCTTC----------CTCGTGCCTT--TTTTATTGGCTCACGTTCTTGAGTGGCAGTGCTTTGAACCAATTGGATATAGCAGTAGGGTTGCGGACTCCGCCCCGGAGGCCGGGAGGGTTGTTCGCTCGGGTCGGGTGTCGCCTG + +>hg18.chr13(+):93889844-93890343 +AATGCTTTCAGAAAAGGAGGAGGCTTAATCAATATTGGGGGGGGGGTTATTATTAGATATCACAAATTGTCAGGTCTATCTTTATTTGAAGGTAGAGGTAGCCTCAAGCACTTTAGTTGGGTTTGTTAAACAAGCAAGCAAAGCGGAAACTACAGCTAAGCATCTTCTGAATGAGATCATCATCACTATAGAAGAACCTATGTCAAAGATCTTCAACTCAAGAAGGAACAGTGAGGATTAGTTCCTTTATTGTCAGCGTCAGAACTGTGGCTTGGCCAGCCTCTTCTCTTAGGTAAGGCATGAGCA--CTAGGCTTCTTCTGTGTATCTCTTGCTGCTTAAATGTGTCTCCATTAGGGGTGTATATCCTTTTCGAAGTCTTCTATATTGAAGAAAAGCCAACAGCACAAAAAGACCAACCAAAGCCACCAGTGTTCCCATGACTACTAAGAGAGTTGTGGGCCAACCTGGAGTTTCTTCAACTGAAACTAAAGCAGAAG +>mm8 +--TGCTTATAGAATAGAAAGAGGCTTATTCAATAT-----AAGGACTTTTAATCAAAGGTCACATATAACTAGCCACACCTTACTTTGACCGTGGTGAATGACCCAAGCATTTTGTCTGTGT-------ACAA-TAAGCAAAGCAGCAACTAGAGATAATTGTCTGCTAAGGCATATCATCATCACTACTAAAGAGCACACGCTGAAGAGTTCCACCTCAAGAAGCGACGGTG-TAATTAGTTACT-----------------ACCCAGGTCAGGCC------------------AGGTAGGAGCA--CTAGGCTTCCTCCGTGTATCTCTTGCTGCTGAGACCTGTCTCCATTAAGGGCGCATAGCCTTTGCGAAGCCTTCTGTATTGAAGAAAAGCCAGCAACCCCAAGAGCAAGACGAAAGCTCCCAGGATTCCAATGACCACTGAGAGAGTTGTGGACCAAACTGGAGCTTCTTCCTCTGCAATGAGAGCAGACA + +>hg18.chr2(+):151974175-151974674 +tttgtatttttgttttttttaagtagagacggggtttcaccatgtgttggccaggctggtctcgaactcctgacctcagactcggcctcccaaagtgcttggattacaaggtgtgagtcaccgcgcccggccAGCTCTTAGTCTTAAACCCAACAGTACGTTATCTCCTTTTGCTAACTGATTTGTTGCTAAAACTTCAACAAGCACTGGACTTGGAGTTTGAACACTTAGTCTGAGGGCCCACTATGTTCAGTCTAGTGAGTCTGAGCAATTAACTCACATTTTGAATTTCAAGTCTCTCGCCTTAGGCAAAACACCACCACCTGATGCTCACCAGAGGGGCGTGACGCGGCAGCTgggcagggaagggatgggaagggatgggaagggaGGCGATCGATAACTCCGGTGTGCCGCTGACTGTTGGATTGGCTCGAACTTCTCCCGCCAGGCCTAACCTACTCCCGCGCACTCCTGGGCCCGCCCAGCCGCCATCTTG +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------CAAGCCCAACAGCCTGCCATTCACTCTCAATAAATGGTTTTGTG-GGCTCCTTTGGGAAGCACTGGAGT-----TTTGCAAACTTGGTCGGCTGAGCAAGTAGCTGGAGTCAGGTGGAGTGGGGC-ACTAATTTACATCACCCATCTCTAGCCCCGGGCTGGAGGCGATACACACCCCCC--GAGGTGCTCcgggggcgggg--gcgggggcgggggcgggCAGCA---------------------GGCCATCGAGCAGCCCGGCGCGCCACCGCCCGTTGGATTGGCTCGAGCCTCTCCCGCCAGGCCTgcccggctcccgcgcgccgctgggcccgccccgccgccATCTTG + +>hg18.chr2(+):151974202-151974701 +gacggggtttcaccatgtgttggccaggctggtctcgaactcctgacctcagactcggcctcccaaagtgcttggattacaaggtgtgagtcaccgcgcccggccAGCTCTTAGTCTTAAACCCAACAGTACGTTATCTCCTTTTGCTAACTGATTTGTTGCTAAAACTTCAACAAGCACTGGACTTGGAGTTTGAACACTTAGTCTGAGGGCCCACTATGTTCAGTCTAGTGAGTCTGAGCAATTAACTCACATTTTGAATTTCAAGTCTCTCGCCTTAGGCAAAACACCACCACCTGATGCTCACCAGAGGGGCGTGACGCGGCAGCTgggcagggaagggatgggaagggatgggaagggaGGCGATCGATAACTCCGGTGTGCCGCTGACTGTTGGATTGGCTCGAACTTCTCCCGCCAGGCCTAACCTACTCCCGCGCACTCCTGGGCCCGCCCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGT +>mm8 +---------------------------------------------------------------------------------------------------------------------CAAGCCCAACAGCCTGCCATTCACTCTCAATAAATGGTTTTGTG-GGCTCCTTTGGGAAGCACTGGAGT-----TTTGCAAACTTGGTCGGCTGAGCAAGTAGCTGGAGTCAGGTGGAGTGGGGC-ACTAATTTACATCACCCATCTCTAGCCCCGGGCTGGAGGCGATACACACCCCCC--GAGGTGCTCcgggggcgggg--gcgggggcgggggcgggCAGCA---------------------GGCCATCGAGCAGCCCGGCGCGCCACCGCCCGTTGGATTGGCTCGAGCCTCTCCCGCCAGGCCTgcccggctcccgcgcgccgctgggcccgccccgccgccATCTTGGTCGTGGAG-GAGCGGGCTGCACGCGT + +>hg18.chr5(+):113796627-113797126 +agtcccatcgaccacccaagggctgagtagtgcgggcgcacagcacgggactggcaggcagctccacctgcagcccctgtgcaggatccactgggtgaagccagctgggctcctgagtctggtggggccttggagaacctttatgtctagcccagggattgtaaatacaccaattggcattctgtatctagctcaaggtttgtaaatacaccaatcagcaccctgtgtctagctcagggtttgtgaatgcaccaatcgacactgtatctagctactctggtggggccttggagaacctttgtgtggacactctgtatctgtctaatctggtggggacgtggagaacctttgtgtctagctcagggattgtaaacacaccaatcagtgccctgtcaaaacagaccactcggctctaccaatcagcaggatgtgggtggggccagataagagaataaaagcaggctactggagccagcagtggcaacccgctcgggtcctc +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr5(+):113725416-113725915 +AGGCGGAATCCCTGCCCTGGAGCGCCCTGGCTCTGGACTGCACCCCCCTAGGGTTTGTCCTGCAGATTCCCCTCCCCATCTTTCTCTGCCACACACGCTTCCCTAAGCCGCGCGCGCCGCAAACTCAGTCTCGGTCCCCGCAGGTGATGTCATGCCCATTGTTTTGGTGCGCCCAACCAATCGGACTCGCCGCCTGGATTCTACCGGAGCCGGCATGGGCCCTTCCTCGCACCAGCAGCAGGAGTCCCCGCTCCCGACCATAACGCATTGCGCAGGGTGCACCACCGCTTGGTCTCCCTGCAGCTTTAACAGCCCTGACATGGAAACCCCATTGCAGTTCCAGCGCGGCTTCTTCCCAGAGCAGCCGCCGCCGCCGCCGCGCTCCTCACACCTGCATTGCCAGCAGCAGCAACAGAGCCAGGACAAGCCGTGCCCGCCCTTCGCGCCCCTCCCGCACCCTCACCACCACCCGCACCTCGCGCACCAGCAGCCGGCCAGC +>mm8 +AGATGGAATTCCTGCCTTGGAGTGCCCTGACCCCGGCCTAAGCCCCCAGGGGTTTCATTCTGCAGGTTCCCCTCCCAACCTCTCTC--ACACACATGCTCCCCTAAGCCGCGCGCGCCGCAAACTCAGTCTTGGTCCCTGCAGGTGATGTCATGCCCATTGTTTTGGTGCGCCCAACCAATCGGACTCGCCGCCTGGATTCTACCGGAGCCGGCATGGGCCCTTCCTCGCACCAGCAGCAGGAGTCCCCGCTCCCGACCATAACGCATTGCGCAGGGTGCACCACCGCCTGGTCTCCCTGCAGCTTTAACAGCTCTGACATGGAAACCCCATTGCAGTTCCAGCGCGGCTTCTTCCCAGAGCAGCCGCCGCCACCGCCGCGCTCCTCACACCTGCATTGCCAGCAGCAGCAACAGAGCCAGGACAAGCCGTGCGCGCCCTTCGCGCCCCTCCCGCACCCTCACCACCACCCGCACCTCGCGCACCAGCAGCCGGGCAGC + +>hg18.chr5(+):113725066-113725565 +AAACTTTTTCTCCCCAAAGCCAGTGCCCCCGCAGTTACTTGGCGGGCAGCCGGCAGCCCACTCTCGGCGGGATGATCTGGGAGAAGCGGGCGTGGGACGAGGGGGCTGCTGTTTTGCAGCCCTGCGAGGCGTGCAGTCGGAGAAGTGGTCGGGGTTCCACACCGTCCCTGAGCCTGCCCCCGGCCAAGGTGGCCCGACGTGCTGCAGTGGCTGGCGCAGGTGATCCGGGCAGCGCGTCCGGCACTAGTCAAGGGGGCAGCGGCACGGGAGGGAGGGGCGCCTTTCTCTTTTCTCCTCCCCCTGCAGCCCAGCTGCACTGCGTGGGGGCTCTCCATCTCCACGCAATCAGCAGGCGGAATCCCTGCCCTGGAGCGCCCTGGCTCTGGACTGCACCCCCCTAGGGTTTGTCCTGCAGATTCCCCTCCCCATCTTTCTCTGCCACACACGCTTCCCTAAGCCGCGCGCGCCGCAAACTCAGTCTCGGTCCCCGCAGGTGATG +>mm8 +AAACTTCTTCTCCCCAAAGCCGGTGCCCCCGCAGTTACTTGGCTAGCAGCCTGCAGCCCACTCTCGGCAGGACGATGCGGGAGAGAGA---GTGGGGCGAGCAGG-TGCTGCCTTGCAGCCCTACAAGGCTAGAGGGCGGGAGAGTAGCTCGGGTTTCTCCCTGCCTTGGCGCCTGCCCCAGACCAGGGTGGCCAGACATGCTGCAGTGTCCCAGGCAGGTCATTCGGGCAGCATGTTCCGCACCAGTCA-GGGGGCCGCGGCAGTAGAGCAAGAGCAATCGCTCTC---TCTCCCACCTCTGCAGCCCGCCTGCATGGGGTGGGGGCTCAGTCTTCCCACGCGATCCGCAGATGGAATTCCTGCCTTGGAGTGCCCTGACCCCGGCCTAAGCCCCCAGGGGTTTCATTCTGCAGGTTCCCCTCCCAACCTCTCTC--ACACACATGCTCCCCTAAGCCGCGCGCGCCGCAAACTCAGTCTTGGTCCCTGCAGGTGATG + +>hg18.chr2(+):165249579-165250078 +GTTTTAGTGAAAACAAATTTAATATCATCTTGTTTGAACAAAGCTTTCAGAATAAGTGAGCAATTAAATTCTTAAAGTAGGGACAGAACACCAACAGGCTCTAGACTCCGGAAGAGCTGTAAGCCGACAAATGGGCATTGTTTTGCTTAACAGTTTTAGCTTCAATGTAAATATATATTATTACTTAGAATATTAGCATCTGAACTATATAATGACTATTTTATCATTTTACTTGAATTAAAACCAGAATTTCTGGAACTTCCAAATAGTCTTTAAAGTTTTTCAATATAAACATAAACTAACCCCTATTCCTCTCTACATATCAAATGTGAAATAACTGTCACAATATATCAGCATTTTCACAGAAAGATGTTTAAGGCTTCTGGCACATAAAATGTGTAATTTCTGTGTGACAATGTCATAATTATATACAGAAAATATTTAAAATTCTTGTAGAATTTAAGTTCTAAAGATTAAAAAAACAAGAGTTCCATGTTAA +>mm8 +GCTTTA--GGAAA-AAGTTCAGTGTCAGG-TGTCTGAGC--AGTCTTTTGAATAAAAGAGGAATAAAATTAT-TAAGGAAGTCCAGGACACTAACACGTTCTAAACTTCTGGGCCACTGGAAGCCGACAATCAAGTACTGTTTCTCTCAACGATTTTGGCTTTCAGGAAAATATATATTATTATTTAGATGGCTAGCATCTGAGATACATAATGACTAACTTAGCATTTTCTTTAAAAAAAAATCAGGATTTTGCAAATGTCTGA------CTTCAAAGTTTTGAATGTGGACATAAACTAACC-CTATTCCTCCTTATAG--CAAAAGTGAAATAACTGCCACAATGTATCAACATTTTCACAGGGATA-TTTTAAGGCCTCTGGCATAGAAAATATGCAATATCTGTGTAACAACATCATAATTATATACAGAAAATATCTTAAATTCTTGTGCAATTTTACTTCTAAAGGTTAAA---------GTGTTCTATTTA + +>hg18.chr2(+):165249502-165250001 +TTTAAAAAGCACCCCAAATATACAACTTGCTTTTATTAAATTGAAAAAAAAATCCCCAAGAGGCAGATATCCCAGTAGTTTTAGTGAAAACAAATTTAATATCATCTTGTTTGAACAAAGCTTTCAGAATAAGTGAGCAATTAAATTCTTAAAGTAGGGACAGAACACCAACAGGCTCTAGACTCCGGAAGAGCTGTAAGCCGACAAATGGGCATTGTTTTGCTTAACAGTTTTAGCTTCAATGTAAATATATATTATTACTTAGAATATTAGCATCTGAACTATATAATGACTATTTTATCATTTTACTTGAATTAAAACCAGAATTTCTGGAACTTCCAAATAGTCTTTAAAGTTTTTCAATATAAACATAAACTAACCCCTATTCCTCTCTACATATCAAATGTGAAATAACTGTCACAATATATCAGCATTTTCACAGAAAGATGTTTAAGGCTTCTGGCACATAAAATGTGTAATTTCTGTGTGACAATGTCAT +>mm8 +GAAACAACAGACTGTAAATATATAACTTGCTTTTATTAAACGGAAAAAGGTTTGTCAGGATGACAGATACTCCAGTAGCTTTA--GGAAA-AAGTTCAGTGTCAGG-TGTCTGAGC--AGTCTTTTGAATAAAAGAGGAATAAAATTAT-TAAGGAAGTCCAGGACACTAACACGTTCTAAACTTCTGGGCCACTGGAAGCCGACAATCAAGTACTGTTTCTCTCAACGATTTTGGCTTTCAGGAAAATATATATTATTATTTAGATGGCTAGCATCTGAGATACATAATGACTAACTTAGCATTTTCTTTAAAAAAAAATCAGGATTTTGCAAATGTCTGA------CTTCAAAGTTTTGAATGTGGACATAAACTAACC-CTATTCCTCCTTATAG--CAAAAGTGAAATAACTGCCACAATGTATCAACATTTTCACAGGGATA-TTTTAAGGCCTCTGGCATAGAAAATATGCAATATCTGTGTAACAACATCAT + +>hg18.chr4(+):187745932-187746431 +AAGCTCAAGTATTTTATTAATAATTTATTGTCAGTAAGAAAGACTGGCTAATGGTAGTTTTCATTAAAAACCTTTACAAGACCATTGCATCACAAATATACAGACACTATAAAAACTGTGTCATGGTGGTTTTGGTTCTAAACAGGTATGCAGAAGGTCCCCGTTACACTTTCCAATAATGAAAAATGTTTATAATTCTAAATACAGCAACCCATGTAAGACATGTTCATGTATCTGATCTCTCCTTCATCCTATGTACAGCTAGAAATGAATGACTACACTGAAATGTACTAACAAAATGTCACACTTCAGTGGAAAAAGACAGAATGAAACCCTGGTTATAGTAAAAAAAAAAAAATCAGGGTGCTAGATAATGGCACTGACACCACCAAAATTCAGTTGAAACAAATGCACAAAATATCTTGGAAATCTAGTTAAAACTATGAAAAATCAAATCTGTACATAAAATTTACAAAAAAAAGAGACAGGAAAATTAAAA +>mm8 +AAGCTAAAGTATTTTATTAATAATTTATTGTCAGTAAGAAAGGCTGGCTAATGATAGTTTTCAGTAAAAACCTTTACAAGACCATTGCATCACAAATATACAGACACTATAAAAACCGTGTCGTGGTGGTTTTGGTTCTAAACAGGTATGCAGAAGGTCCCCTTCACACTTTCCAATAATGAAAAATGTTTATAATCCT-AATACAGCAACCCATTTAAGACATGTCCA-GTAACAGGTC--GTCCACACCCTATGTACAGCTA---------CACTGGACCGAAATGTGTCAATGAAATGTCATACTTCAGAGGAAAAGAACAGCGTGAAACCCTGGTTACATCAGAAAA-------TCA-GATGCTAGGCAACGACGCTAACACCACACAGATCCAGCAGAAACAAAAACACGAGGCGTCCTGAAAACCTAGGTAAAACTAGGAaaaatcaaaTCTGTACATAAAATTTACACAAAGAAGC-----AAAAATTAAAA + +>hg18.chr2(+):27572711-27573210 +TTTTTCCCGCTGTAATATCCAGTACAGTGTGTGCACACTTGGGGCTCAGAAGCTTCTACTGCCTTCCTTTCTGAGAGGAGAGGATAAAATGGGACCAGTGGGACTGACTGTGTGTGCTGAGCATGTGATCAAGCCATGGGCCAGGTCCTCTGACTTGTGCTGACTTGGTGACCCTGATCTCTGGCCTCGGAGGACACTTGCCCAGGGATTCTCACTGCCGTGGGTGTTGTCCTGCACTCCCAGGCTCCAGGTCCTCTGTAGAAGAGGGCATTGTCCCGGTAGGGCAAGAGTCCCGAGCCTCAGGTCTTCCTCTTCAGGGGCCAAAGCAGAGGCTGGCGAGTCAGGGTGCTTGCAAAGAGGAAGCCCAGGAGTTTCCCTGGGGTTACCAGAGGGCTGGGGGCCTAGTGACCAGGAAAGGGTGGTGCTCTGAGAGCCCAGGGTGCTTGGGTTAATCATCACTGGGGCTCAGATAAGGCCCTGCCAACTGGAAGCAGAGTCA +>mm8 +-CATCTCCTCTGTGATATCCAGTTCAGTGTTCGCACACCTGGGGTCCAGAAGCGTCTATTGCTTTTCTTTCAGAGAGGAGCAGATAAAATGAG-CCAGTGGGGC------TGCATGCTGA-CATGTGATCAAGCCATGACCTGAGTCCTCTGACTTCTACT--------GACCCTGATCTCTGGCCTTTGGAGGCATTTGTTCAGGGATTCTTTCTGACCTGGG---TGTTCTGCAAGGGCAAAA----------GCAAAGAACGT----CTGGTCCTCTTCTCCAAGGGCAG------------------------------------AGGCTGGCAAGCCAGAGTATACGCAAAGAGGACCCTCAGGAGCTCCTGTGGGCTGGCCGGCGACAGGAACGGGTGTTGA--AGAGAGGGGTGGTGTTTTGAGAGGC-AGGGTTCTTAGGTTAATCATCTCCATGGCTCAGATAAGACCCTGCCAACTGGAAGCA-AATTA + +>hg18.chr1(+):111758461-111758960 +GGTTCTTGTGTTTACAGTTTATTTAATGGAAAAGAGATTGGCCTATTCTGGTTTTGATGCCTGCTTTGCCCCGGGATGAGAAGGCTTCCAACATGTCACTTAGAAGAAAAGACAAGGGTTTTCCCTGGTTTCTGACACCAGAGGGGCTTAGGCTTCTTCATCCACAGCAGAGTTTTCTGGGATTTCTTTTTTTAGAGAAAGAGGACTTGTTTGAGGGGTTACTGAGTTGACAGAGGAATGGTTTCCATAGATGGGAACAAAGCGGTTGTCAAAAGCTAGAGGAGTTTGTTCCGGGAGCTGGATGACGGGGCTGGAGGACAGCATCATCCTGTTTTCAGCTTCCATCTGAAGACCCAAGTTACCCATCCTGGGGTGAGTGCCCACCTCAGAAGTCAAATTCTCCCCTCTTAAAGGCATAGTCTGCCCTTCAGGGGTGACTGATATGTTTCTGGAGGGGACAGTCACCTTTTCACGGGCCACAGCCTTCCTTCTAGGGGCC +>mm8 +GATTCTCATGCTTCCAGTTTATTCAATAGAAAGGAGATTAGCCCATGGTGACTTTGGTGCCAGCTTTGCCCCAACATGAGGTAACGTCTGTTGTATCACATAGAAGAAAGGACAAGTGTTTTCCCTCGGATTTGCCACCAATGGAGCTCATGATCTTTGATTCATAACAGAGTTTTCTAGGTTTTCTTTTTTTTAAGAGAAAGA-TTTGTTAGAAGGGCAATTGAATTGACA----AATGGTTCCTATCAGTAAGAGTGAAGCATTTTTCAAAAATGAAAGAAGTATATCATAGGAACAAGACAATAGAGCTGGAAGA----------------------------------CCAATTTCACCCATCTTGGAGTACGTTTCTACCTCAGTAATCAAACTTGCCCATTTTAGAGTTTTACTCTGTCCATTAGGGGTAGCTGACATCTCTCTAGGGGAAACAGTGGCCTTTTCAAGTACCATAGTCTTCTTCCTGGGAGTC + +>hg18.chr11(+):49124766-49125265 +TATAATATTCAACTTTATTTCAAATATACCAATTTTAAAATTTATCAATATACCCATTACGATTCTTTCTGAGTGACATACCACACAAATTCAATACGGATTCTCTAAAGAATCCTCTTAGGCTACTTCACTCAAAGTCTCTGCAGCTGCCTGCACTGTGAAGGCTGCAACATAAATCTGTCTCTTCACTTCTCCCCAGGCCTTGGAAGGGTCCACTTTGCTTTCAATATCAAACAGAGCATCATAAATTCCTGGGAATGACTCCCCTGCATACTTGTTGTGGCTGCTTGGAGCATAGATGACATGCCTGTTGATAAAATCGTTTGCTGTTTATTAGGTGCCCAAATGATATACAAGAGAAACACAAGAGCACTCTGCAATTCCTGGATTGCATATTCCTATAACAATTTGAACAAGCCACTTGTCAACTGAACTTCCAAGTTCAATCATCTCTGAAGACTATTATATGAAATCTATAGtaattaattatatttttatt +>mm8 +---attatCCACTTTTGTTTTGAatgtatgcatgtgtatatatatatatataAGCTCCATAGTTCCATAGGGAT--------------------TTTGTG-ATTCTGTAGAATGTGTTTAAGCTACTTCCCTCAGAGTCTCTGCTGCAGCTTGCACTGTAAAGGTTGCAATAGAAATCTGTCTCTTCACTTCGTTCCAGGCCTTAGAAGCATTGACTTTGCTACTTATATCAAAAAGGGCATCATAAATCCCAGGGAATGATTCTCCTGCATACTTGTTGTGGCTGCTTGGAGCATAGATGATATGCCTGTTGATGAAACATATCTTTGTCCATTAATTGCACAAGCAACATACAAGAGAATAAAGGCA-----CTATA---CACACATGTCATACTCCTGTCCTGGCTTGAATAAGTCACTTGTTACCTGAGTTT-AAAATGCAATAATATCCAGGCAC------------------ATAAATACATATAATTTTTGC + +>hg18.chr11(+):49124879-49125378 +CCTCTTAGGCTACTTCACTCAAAGTCTCTGCAGCTGCCTGCACTGTGAAGGCTGCAACATAAATCTGTCTCTTCACTTCTCCCCAGGCCTTGGAAGGGTCCACTTTGCTTTCAATATCAAACAGAGCATCATAAATTCCTGGGAATGACTCCCCTGCATACTTGTTGTGGCTGCTTGGAGCATAGATGACATGCCTGTTGATAAAATCGTTTGCTGTTTATTAGGTGCCCAAATGATATACAAGAGAAACACAAGAGCACTCTGCAATTCCTGGATTGCATATTCCTATAACAATTTGAACAAGCCACTTGTCAACTGAACTTCCAAGTTCAATCATCTCTGAAGACTATTATATGAAATCTATAGtaattaattatatttttatttcaaacaaataaattaaaGTGGTTCAGTGCTACAAAACTAACAATGATGATAGTAACCACAGCAATCATTCTTGGTATTTAATGtttacttgcaatttttctgatgtttagaa +>mm8 +GTGTTTAAGCTACTTCCCTCAGAGTCTCTGCTGCAGCTTGCACTGTAAAGGTTGCAATAGAAATCTGTCTCTTCACTTCGTTCCAGGCCTTAGAAGCATTGACTTTGCTACTTATATCAAAAAGGGCATCATAAATCCCAGGGAATGATTCTCCTGCATACTTGTTGTGGCTGCTTGGAGCATAGATGATATGCCTGTTGATGAAACATATCTTTGTCCATTAATTGCACAAGCAACATACAAGAGAATAAAGGCA-----CTATA---CACACATGTCATACTCCTGTCCTGGCTTGAATAAGTCACTTGTTACCTGAGTTT-AAAATGCAATAATATCCAGGCAC------------------ATAAATACATATAATTTTTGCTTTAATGAATAACTCAAAGTGGTTCAGATAAATAAAAATAACAGTAAGGACAGT--TGATGTTAATTGTGCTTAATACTTAAAAACAACTTATA-TTTTTATAGTTACTAAAA + +>hg18.chr7(+):26298700-26299199 +GAGAAGGCCCAGGGGAAAATCCATATAATTGACTGATTATCAGATTTGGTGACCAGGAAAGCAACAGCCTGTTTTTCAGTTCCGATGCATCATACTTTTCTCAAATTACACGGATTATTGAGGGGGATCGTCACGGAATGGGGAGCAACATGTCCTGCTGAAAGGAAGGGCTTCTATCTCTACAAGACACGTTAAAaatgatggtatcagaaaattagaacggggaggaggcttgcacatgatctccatcaaacctttcattttacagacagggaggctaaggccgagggacgctgagtgttgggaccaggatcattcagccagatgggagcagaaccaggcctacaacctggcaggcttctgacttccaccccgGAGTTATGTCCACCTCTGGGGCCTGGGAACTGGGTTTGGATTGCATAAGCTCCCCCTCCTCTCCCAGGAGGGGGCTGGGCTGGAGGCTGAGGCCTTCGCCAGGAAGAAGCAGGGACTGCTTGGA +>mm8 +GAAAAGGCCGCGGAGGAAACCCACGCTGTGAGCTGATGATCGGGTTTGCTGAGTTGGGAAGCAACAGCCTGTTTATCGGTTCTGACACATCACACTTTGCTAAAATTACAAGTATTGTTAA-GGGGATGGTCACGGGATG-------------TCTGCT-------------------TCCGCAAAGCACATGGAGAGCGATGG-ATCAGAAATTGAGAACACTGA------TCTTTCGTGATCTCCATCAACCCTTTTAGTTTGCGACAGGGGAAACCAAGGTCTGCAAGGGTGGAGC------------AGCATGCA-CCCGGTGGGAG-------------------------------------------GGGTGTGTGAAAATCCCTCTCGTCCGGGGAGTGGGCTTGT---------------------------GGGAGTGGCCGGAAGTG-GGCTGGGGGTATT------------ATGGAACTCCTTCAA + +>hg18.chr7(+):26297541-26298040 +CAGTTTAAGTGATGATTGTGGTTTCCCATGCAAACAGGTGTGGGGACCCAGCCTCAGGTGCCATTTGGGAAATGCTTTCCTCAGTCAGGTCCCTTGGCAGATCTCATTAGCTTTCCCCCCAAATGTTTTATTGAGACATTTCAAACATAGACAAAAACTGAAATAATTTTATATAAACACCATAGCCCACCACCTAGATGCTATGAACATTCTGCCATTCTTGTTTATCACGTTATTTATCCGTCCTCCTCCCCATCGGCAATCCTCCCCATAACTGTGGGGTCAGGGTTAGGAAGCTTAAGGTGACTCAGGTGGCGAATTCCGAAGGGTGCCGCTGGAGCACCTCCAGCCTCAACGTCCGGACTAATGGGGGCATTTCCTCCCTAACTCAATTTCAGGAAGCAGGAGGCTAGCTCTGCAGGGTGGGGGCGCACCTGGGCTGGGCTGCGCGGAGGCGGCGGAAGCACTAGGCGCGGCGCCCACAGGCGGACGGCTGGCG +>mm8 +-----------------------------GCACACAGGTGGTGAGAGCCAGCTCAGATGATC-TATAGGAA---------CCGGACATAT-CTTTGGCAGATCTCA-TAGCTTTCTCCTCATCTTTTTTAAAGGGAGATATTAAA--------AATATTG--------TTATACAAAAGTAAT-GCCCTCCATCGAGATCCTGCTAACATCTAGTCATGCTTGTTTGTTATTGGCTTCTCTCATCTTGATTCC------------------TCACTGCTGGGT--------------------------AGGGAGAAAGACCCGCTAGCTA-------------------------------------GGTGGCCTTTCCTACGTT-------------------AAGGCTGGCA----------------------------GTggcg-------ggtgggggtggggggc----------------ggcggcgggcg + +>hg18.chr16(+):80625865-80626364 +AATATCTTCCTCTACTTTCATATCCCTCTCCATCCAACCCTTCAGCCTGCCTCAGTTGGGATTTGTAGGAGTCCTGAAGCTATGGACCAGATCAGAGGTGCCTTCCCTTCCAGAATCTATTTTCCAAACTTCATCGATTGCCTATATTTATATGCATGCATGcacacacacgcacacacacacacacacTCTCACTCACTCCCGAGTCAGAAAAAGGACTCAGCACCCAGACATACTGCAGGCTCTTGAAGAAGACAGTATTTTCCTGTGAGCTAGAGGATCTTCCTGTTATTCTCCATGCAGTTCAAATTCTGTCAATTATTATCCAGTTAGTCATCGCTCCAGAGGTGGACTGTCATTAAAAAAAAATAGAAGGTGTGTGTTTGTGGGTGAGTATGTGCATGTGTTGTGTATGCAGGGGGTGGGGAGGGGCGAGAGCGGTCAAATAGGAAGTGCCTTGGTATTTATGTTGAAGTGCACACTGGTTTAAATTACCCAC +>mm8 +AGAGCCTTTTTTTGGCT-------------CATTGAGCCCTTAA-CCTGTCTCAG------TTGGCAGTAGTCCTCCAGATACAGGCCAGATCGGGGATGCTCTCTCTT--AGAATCCACTTTCCAAGCTTCACTGATTACCTGGAT-------------AacacacacacacacacacacacacacactcacacatacagatcacTCGGAAAAAGAACTCAAC------CAACACAGGAGGCATCCAAAGGAGA---------------------------------TTGTCTTCTT-----TTCCAAGTCTGTCAATCATTATCTGAGTAAACATCTGTC---AGGTGGGA------------------gtaggtgtgtgtgtgtatgtgtgtgtgtacgtgtgttgtgtgtgtATGTGTAAGTGTTGAG-------TGCCTTAGGGGAATGAGC-AGGTATTTATATCACAGTGCACA---GTTTAAATTACATCC + +>hg18.chr19(+):54159879-54160378 +AAGGATCCGGAGACTCCTTATCTCGCAGCGCAAACCTCAGGCAACTACAGGTCCTCCCTGCACCTTTGAGGTGCCCCTCCCCCCACTCAAGGTTCCAGAAAAATCCATGCCCTCGGAAACCCCAGAATCTTACTTTCCCGAGGCACCCCAGGACCCCAGGGTCATCAGTTCACAGGGCTGTTAGTGCTCCCATAAAACTCTAGCCTCCCAGAGGGACCCCAGCCCCCACCCTCCCGCCCACGAACCCCTGCATTTCCAGAATCAGCCCCAGGGCCCCAACCCCCCCAAGCCCCCATTTCACAACACGCTGGCGCTACAGGCGCGTGACTTCCCCTTGCTTTGGGGCGGGGGGCTGAGACTCCTATGTGCTCCGGATTGGTCAGGCACGGCCTTCGGCCCCGCCTCCTGCCACCGCAGATTGGCCGCTAGCCCTCCCCGAGCGCCCTGCCTCCGAGGGCCGGCGCACCATAAAAGAAGCCGCCCTAGCCACGTCCCCTCG +>mm8 +ATGACGTGACATATCCCTT------CATTGTGTGCATTGGACATATGGAGGTTCCCTTTGCATTACAGAATTACCCCACACTCAGCCCA--TCCCCAG----ATCCATGTTCTC--AGGCCCCAAAA-TTCTCTTTTGTGAGACACCAAAGGACCTCGAAGTCATCCCCTCCCCAGGGTCTCAGTGACCCGGAG-----------------------CCCAG----AACCCT-------GCGACCCC-------TCCAGGTTGCGCCTCCGGATCCGGACCCCCCCAAGCCTCCATTTCACAA-GGCCTCGCGCTCCAGTCCCGTGACTTCATCTCACTGGGTGGGTGGGGAGCGAGGTTCCCCTCAGCTCCGGATTGGTCAAGTATACTTTTCGTCTCCGCCTCACGCCACCGCCGATTGGTTAGTCTCGGGCCTGGGGCACCCCTCCTCCGGAGGTCAACATGCTATAAAAGGAGCGCTCCTTGCCGGGACTTAGAG + +>hg18.chr16(+):55552764-55553263 +AAAGTCTACATAGAGGACTGTTTCTGGggtacccagatgcagcgtcaaatgccatggaatactacagtgaggacattatcctttcaagctttcaaatcagagcaagggaaaggtcgatgctagagtttctctagcacccatgaagccctctccctttttctactgagttttactttacaggcaacagcaggcttcaagcttggggtcattgtcgggcaacagtatctggcaagaattcaatgtctttttctcatagtcattgtattttggcctctttctatttatggcaactgagagagaaagcttattcctagatatatgtatttaagtaaaaaataaatgaattcatggaaacatattaagcaattatccagataacataagggatggcaaaaatggtgcagatggtGGAGGGGAGACAAGTAGAAGTTGGGGTGCTCTTGTTGAATGTCTGGCTCTGAACTCTAGAGGAGGCCGCAGGGGCTGGGCAGGAAGGAGG +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr3(+):187840344-187840843 +CATTGTTTAAAAATAACTTAAATGATGATAAGTAGAACATTTTCCACCCAGATGGCCAAAGTGCTTAAGGAATCTCAACTGTGCTTCTGGCAGATGACTGTGGGGTTCAACTACCTCCCTGATCTAACAAGGGCTTTGCACACAGAGTGTCAGCCAGGAAGTCTGAATTCACCAAGCACCACTGGGACATAAGATAACTATTAGAGTGGCCAAGGAGACCTCCACAGCAAAGGTGTTAGGGGAGAGGGGGAGAATGGGACAGTCCTCCATATTCCTATTCAGGAGGGGACCTGCAAATCAGAATCTAATCATAAGAGCCTTGAACAAATGTTATGATTTCTCAGGAAACAGTTGGGAAACTTAAATTCATTTGTATGTACAGGTGGATATGAGGTTGCTCAAGGGTCTAAGGTTAGAATCATTGGGAAATGCTATCCAAAGTACTGACTTAGGAAAATCCAAGTTCAGAATTCAAGGTGAACTTGGTTAGCCCTTCCAG +>mm8 +T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTGATCAAACATTATAATTCCT-GGGAAAGGGTTAGGAAACTTGGATTTATTTACA--------CGAAA---GGCATGCTC-CGGATCCAAGGTTAGAA-CACTGACAAATCCAATCCAAAATATTGACTCA-AAAACTGCTTGTTTGGACCTCAGGGCAAGTCCTAGTAGGCTATTCTG + +>hg18.chr3(+):187840445-187840944 +GGGGTTCAACTACCTCCCTGATCTAACAAGGGCTTTGCACACAGAGTGTCAGCCAGGAAGTCTGAATTCACCAAGCACCACTGGGACATAAGATAACTATTAGAGTGGCCAAGGAGACCTCCACAGCAAAGGTGTTAGGGGAGAGGGGGAGAATGGGACAGTCCTCCATATTCCTATTCAGGAGGGGACCTGCAAATCAGAATCTAATCATAAGAGCCTTGAACAAATGTTATGATTTCTCAGGAAACAGTTGGGAAACTTAAATTCATTTGTATGTACAGGTGGATATGAGGTTGCTCAAGGGTCTAAGGTTAGAATCATTGGGAAATGCTATCCAAAGTACTGACTTAGGAAAATCCAAGTTCAGAATTCAAGGTGAACTTGGTTAGCCCTTCCAGTTGTAACAAAACCGCTCAAGTCTGCCTTAAAGAGCCTTACAAGCCAGCCAGTCCCTGCAGCTCCACAAACTGACCCATCCTGGGCCTTGTTCTCCACAGAA +>mm8 +-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTGATCAAACATTATAATTCCT-GGGAAAGGGTTAGGAAACTTGGATTTATTTACA--------CGAAA---GGCATGCTC-CGGATCCAAGGTTAGAA-CACTGACAAATCCAATCCAAAATATTGACTCA-AAAACTGCTTGTTTGGACCTCAGGGCAAGTCCTAGTAGGCTATTCTGTTGCAGTAAAGCTGCTCAAGTGAACCTTGAG--GCCCCACGGCAGGGCTCGTCCTGGCAGCTCTAT--ACTGACACATCCTGGATCTTGTTCCCCACAGAA + +>hg18.chr4(+):25358148-25358647 +GTAGTCAATTGTATAAAAATAATTTTATTTACTACTGTAAATAAAGTAGTGCAAAGAGTAGTTTGGACCCACAATATTGCATTACTGATTTATTCACTACCTTAGCAGCATGTAGTATACAGACATTCTGCTCTTCCTCTTCCTCTCTAacacacacacacacacacacacacacaTATCCCTGTACAGACTCACGCAGGCATGAGGGGTAGGGATGAAACTATAAGCTAGAGGCTTACTTGCTGCATATTCCGTTGCTGCCAGTCTATTCTAACGTGTAATTCATGGAGAAGACTACAGTTAAGTACTAAGAATCTTCTAAATGTAATTTCATGGATTGCAATTGAAATGTAAAAGATATCCGACAATGCCATTAAATGATTCGGAAGCACTAGGACCCTAGAAAAATTCAAGGAGAAAAATGTAAACCAATTTACAAAGCTATTGCCCTCCCTGCATTTCCAGGCACAAACAATTTATTTCAAGGTGCCTTATAACT +>mm8 +GTAGTCAACTGTAGAAAAATAATTTTATTTACTACTGTAAATAAAGTAGTGCAAAGA-TAGTTTGAACCCACAGTATTGCGTTACTGATTTATTTACTACTGTAGCAGCATACAGTGCACAGACACTCTGTTCTTTTTTTGTCC-TCTTACACAC----ACTCTCTCTCACACACACACACCTATACAGACACAGGCAGGCATAAGGGGTGGTGATGAACCTATGAACTAACAGCTTGTTTTCTGCGTATTCCATTGCTGCCAGTCTATTCTAAT-GGTGACTCATGAAGCAGACTACACTTAAACGGTAAAGATTTCCTAGATGTTATTGCATGTGTTATGATGGAAACATAAACGATACCCAATAATGTCATCAAATGATTTGGAAGCACTATGACCCTAGAAAAATCCAGGGGAAAAAATGTAAACCAATGTACAATGTTATCGCCTTCCCTGTGTGTGGAGT--------GTTTGTCTCAAGGCTCCTTCTAGCT + +>hg18.chr3(+):113535219-113535718 +TTCCAGGCTCGCTTTCTCCGGGAGAGCTCCTGCGTCTCCTCTTTGTTATGCAGCCCCTTTCTCCCTCCTAGCCCTTGCCTGGGGGAAGCCATGAAGGATCAGTTAAAGCTGAAGCTACACTTGAGAGAGCTGAAATGCTCTGTGATCATAATGCTTTGAAGGGTTAACCCCGGGTATCTAGAGAAACAGACATTTTGTTTATTCGGAACCAGCTTACAAGACAAAAAACGGAGAAGGTTTTCATATATCCCATTGGTATATGAAATCCAAATACAATGGTATTGGTATAAGAATCCAAATACAGTGAATGCCTCAAGATAATTTTTTCATGTATGGTTTGTTGGCAAGACCACATAGCCAATGATTTCACTGTCTTTCTTAACAAAGGAGAATGGTGGTCTGTGAGCTACGGTCTACTGCAAGCTAGATGCTGTTAATCTTCTTTGTAACTATCCTTCTAAAAATGAATTATTACCTCGTTTTACACATAAACAGGCGG +>mm8 +TCTCG--CTTGCTC-------------------------TCTTTCTCA----CCCCCTCTCTTGCTGCTGCTCCTTGCCT--AGGAAACCATGAAGCATCTAGCAGTACTGCAGC-------GAGCAAGCC--ACAGCTTAGTGGTCTT-------------GTTATGCCAAGGTATTTAGAGAGGCCGACATTTTGAGTCTTTGGTACT-GTTTACAAGGCAGAAAAAAGGAAGGGTGGTCATACGCCTTATT----------CTTTATACACACGGA-ATTGGTATGCGAATCTAAACGCAATTAAACCC--CAGGTACCCTTTTCATCAG------GCTGACAAGACC----GAC------TTGTGTTACCTTTCTTAACAAAGAGGAATGTGG-----------------ATCTGTCAGCTAGATGCTCTTAATGTTC-AAACA---------------AGGAATTGCTTTC-TGTTTTACAAAGAATCGGAGAG + +>hg18.chr3(+):113534107-113534606 +-----------------------agaagaagaagaaggagaagaaggagaaggagaaggGAAAAAAGAATCCTCATCATTAATGCAAGTGGAAGGAAACTCTTCACCAAAGAATTGATCACATCATGAAAGGTGAAATCATTACGGAATTGCTTAAATATATAATTTGAATCTGGatttaaaaataataaatgtaagttttttctttaaaaaaaaaaaaaaGTCCATTGGTTAAATTCAGCTTGAATCCTTTGCCACTACATCAAGAGCTAACAGGTCAACAACTGATCTCCACAACCTCCCACCTCATTTCCTTTCTCAGTCCAGGTAGCAGGAAAATGGAAAAAAAAAAATGATTTTTTTTTTCCAAACACTTTGTCAGTTTCCCCAGCGGTCACCTTTGAAAAGGGAAAAATGTCTGAAAATAGACAAAGCTGAATATAAACATCATTTAATTCCCCCCACACAGACAGCCTCCGCTCCTGTGAGGGCGTGGGGAA +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr15(+):40483770-40484269 +gcttcatcaatgaggtgatgtatgtgaagtgtctggcacagcatgggcactcaaACAGAGGTGCTTTTTCACACTTTAcaccttacaaggtacttttcacatgtgtcatcgcgatacttgcaaggttgctgagaggtagatggggttataatccctggtgttcaagaaaggaagcagaggctcaatggggttgaatgacttctctgagttcacagagctcagtaagtggcagggttggaactcacattcagactctctgactccagacttaggtttttccgcacctccacgctgAGGCCAGCCCCAGGCAGTGAGAAGCCCAAAGTCCGAAGCACAGAGTGCTGTGTGTTGGGCTCTGTGTGTTGAGGAGTCTTGTGACTGCCTTGGGGCTTTGGGCTGTAGTCAGCTGACAGTCCTTTGTGCTCTGTGGGGATGACGTAGGCCAATGGGAGGACAAATGCCCCTCTGAACTGTCTTCTGGGCAGTGACAGTCATGGTC +>mm8 +gtttaatctataagctcacacatgtgaaatgTCAGGTGTAGCATGTGCAT-CACAAGGG-----------------TA----TTTCTAGATATCCTTCATGACTGTTACATCATTTCTT-CAAACATTTGGAGAAGtggataaggttgtcatcccagcttttcactcgagaaggtggtggctcagtggggttaaatggcttccttgcactcctggag-gcaggaagtggcagGTAGGG-----AAGTTTAGAGTCTC--------------------------------------------------------------------------------------------TCGGTGTAATG----GAGGAGACTCAGGTCTGCCATGGACCTTGTGGCTGTAGTGACTTGACCC-------------------------------------AGGACAAACGCCCCACTGAGTGTCTTTC-AGGTAGTGACTCC-ATGATC + +>hg18.chr15(+):40427094-40427593 +CTGCAGTGAGTGAGGACAAAAGTCATCTGTCCAAACCAAGAAACCACCATCAGTTATACATACACACATACACAGACTTCTGGGCCCACTCACACAGACAGAAAACTTCACTCTTCAGCAGGGTTCTGGAAATAAGCATGTATATACTACACTGATAGGAAAATTTAAAATACAAAATAGGAAAAGCCACTTATAGGATGGGCAGAAAGGAATTCATCACTTAAGAGGAAAAAACAGCAAAGACAGGTATAGATAACAAACCAATGAAGGGTGGGAAGTTTCCCTAATAATTAAAAAGTGGACCATTCTTCAGCGTTAGAGCTCTTTTCCTTTTAATGCCAGGACCCCCATATTTGCCATCTCTGTGCCCCAAAATTTATTTTGCCTACAAATCCGTACTTGTAGACTGTGaattttataaaatgaaatatttttaaattCTACCTTGAAATTTTCTTATATGAATACTGCTTCCCTGAGCGTGCTGCTCTGTTACAGA +>mm8 +--------------GGCAGAAGTCATCTCCACAGACAGACAAACC---CTTTGTTCCACAAGT-CCCAT-----------TGCACCTACTTACATAAACAGAAAAATCCACTCTGTAGCAAGTCTCTAGAGTAACATGCTTGC-TATTTTATTGAC----AAGTTGAAAATAAGTCTTTAGAGGGGCCTCTAACAAGATGAGTAGAATAAAATTCATTGTGTCAGTGAAAAA-GTGGCAAAGACAGGTAGAGATAATAAG----TGGGGGGTAGGTAATTGCCCAAAT-ACCAAGAGATGGACTATTTTTAATTTTTTCAGTTCATTTTCTTTTCATCTCACAGTCCCCATGCTTGCCACTGCTCTTGCCACAGATATTCTTTGCTT--GAGTTTATATCTGTAAAGAGTGGATCTCATATCGTGAAATAC-----------ACTTGAAAAGTTGTCCATAT-AGCATGTCATTCCTGAGAGTGCTGCTGTGTTACAGA + +>hg18.chr15(+):40481381-40481880 +TGGCTTCCTCAATACCCAGTGACCCACAGAGCTCCTGGTATCAGGACCACTTGTGTTTGTAACAAGCAAAAAATACCAGGGGGGGCATTAGAGAGGCAGTGGAGCGGGCCTGGCAGAACAGGTGCCTGGGGGTCAGGCTTCCGCATGCGGGCTGCAGTTGCTGGCATTGCCTTCCGCAGGCTCCTCATCCTCATTCACATCTGAAGCATCTTCCTTTCTGTTTCTTCTCAAGGTTCCCAAAGAGGTATAGCAGCAGCAGCGGCCAGCAGTTGTGTGCAGCACTACCCAGGGGGCCCCGAGTCTGTCTGTGGCTCGTCGAGAAGCTTCCTGGTGGGGTTTGTGGGCAGGACTGTGATAGGAGAGGGCCTTGCCTGTGTTATTTCCACTGCAGAGCAGGTGCCTCAGGGCATTGCATGACCCATGACTACCACCCCCAGGATGTGCACTTTCTCCCTCGCACCAGACACTGCACGTCACACACATGCCTTTGCACACTCAC +>mm8 +TGGTTTTTCGTGTCCCCAGTGACCAACAGGGCTCCTGCTCTCAGGCTCACACATGTCTGTCACCAGT-GTAAATACCA-CAGTTGCA-------GAAGGCAGGACGGAGCTGGCCGGGTGGTAG-CAGGAGTTAGAGCCTACTCATGTGTCT----------GGCATTCCCTTCTGCAGACTCTGTACCCTCATTTACATCAGAGATG-TTCTTTTTCTATTTCGCTTCCAGGTTCCCAAAGAGGTATAGCAGTGGCAGCGGGCAGCCGTGGTGTGCAGCA-TTCCTTGGGGGTCCTAAGTCTGTCTGTGGCCCCCTAAGAAGATTCCTGGTAGGGTTGGTGATCGAGGC--TGATAGGA--------------------------------------------------------------GGGTACCACGCCCAGAATGCACGTTTTCTCCCTCCCACCAGACACCGCACATCAAACACACACCTTCCCACACTTAT + +>hg18.chr15(+):40457707-40458206 +cctgtgggtaattaatctggttgcccccaccccggggggagctatcctgccgtgagtgatcaaaagttagttttaggaccacatgagtaaacaagctctttagataaactcctctacattcctatgtatctgtgccctaagctattaagtggattcggctgccttcagccaaacactttatgcaaacctctaggccttccaagagggtttgtgtttatatcctataaattcatcttaaaatttttgccaccagcctgactgaactcccaaaagtgataacctctccttcatttttaatattagtaatttgtgttttcatttttcttgtttagcatggctaaaggtttatcaattctattgatctttccaaagaaccatttttgttttcattgactttctattgttttcttgttttttatttcattcatttctgctctgattttttattgtttcttttcttctgcttgctttaggcttaagtatctcttctatagtgtac +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr15(+):40438491-40438990 +ATTTTCTCAAATGAGGACTCTGCTGAGTAGCATTTTCCATGCAGACATTTCCAATGAGCGCTGACCCAAGAACATTCTAAAAAAGATACCAAATCTAACATTGAATAATGTTCTGATATCCTAAAATTTTAGGACTAAAAATCATGTTCTCTAAAATTCACAGAATATTTTTGTAGAATTCAGTACCTCCCGTTCACCCTAACTAGCTTTTTTGCAATATTGTTTTCCATTCATTTGATGGCCAGTAGTTGGGTGGTCTGTATAACTGCCTACTCAATAACATGTCAGCAGTTCTCAGCTTCTTTCCAGTGTTCACCTTACTCAGATACTCCCTTTTCATTTTCTGGCAACACCAGCACTTCATGGCAACAGAAATGTCCCTAGCCAGGTTCTCTCTCTACCATGCAGTCTCTCTTGCTCTCATACTCACAGTGTTTCTTCACATCTATTTTTAGTTTTCCTGGCTCAAGCATCTTCAGGCCACTGAAACACAACCCTC +>mm8 +ATTTCCTTGACTGGAAATTCTGCTGAGTGGCATTTTCTACCCA----GTTGGACTGAAAGCCGACTCCAGAACATTCTAGAAAAGATACTGGCTCTAA---------------------------------------------------------------------------------------------------------------------AATACTGTTTTCCATGTATCCAGCGGCTGCTGCTTCAGTAGCCTGCATGACTGCCTAGTCCTTTACACA---------CTTTGCTGATTTCTGGTGTTCAGCTGTCTCAGACA-----CTCTCACTTCTTGACAAGCCGAGTTCTTAATGTCAACAGAAATACCTCCAGCTAGGTCCTTC-GCGACCACTCAGTCTCTGTGGCTTTCATGATCACAACCTCACTTCATGTCTATTTTTAGTTTTCCTGGCTTAAGCTTCTACAGGCCACTGAAACACAACCCTC + +>hg18.chr1(+):120055534-120056033 +tttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccatattttcttaatccagtctatcattgttggacattttctttttgatagtcgaattcccttcaacgtctagcacagtgccttgcacatttacccactcaaaaaaaatttcgtaaggaattaataaatGAATCCTTAGGAGGAAAAGTGAAAATGAAGTTTTTCTCTCAGGATGAGGTGTATTTCTCCGTTCATTTCAGATATGCATCAGCTAGTCAGCGTAAATTGTGCTTTTTATATGCTCACCAGGTGTAGGTAAGAGCTTTGGCTGAGATGGAGAAATTCATCGCGGGAGGATAATAAAGCGGGCAGGGATTTGGCAACCTCAGAGCCGCGAGGAGGAGGCGGAGTCGCGGAGAGTTTGAGTATTTCCGTCCAATCAAAAGGAGACTGTAAGAGG +>mm8 +-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAATG-GTCTTTAAGAGGAAAAGTTACTATGAGATTTAATTCCCTCGTGGCAGCGTATTTC--TGTTTATTTCCAATATAAATCAGCCTGCTGGCATAAATCGTGCGTGTTA-AAGCTCACCCGGGGCAGGTAAGGGCTTCA---CTGCTGGA-AGTGTAGTCTGTGTAGGataaaaaaaaaaaaaaaaaTGTGGGAGGCTCTGCCC------GGGGAGGCGGAGT--CAGAGAGTTTAAGCATTTCTGACCAATCAAAAGGAGACTGTTGGCGC + +>hg18.chr1(+):120063274-120063773 +AAATCAGAATACCTCCAGGTGCTCACCTGGTGTTGGCCTCAGCACTGGGGCAGTCAGCACTGAGGTGGCTTCTGTTTGATTCCTCTAAGCCCTGGGTGCCCATGTGACTTGTATACACCCAGGTCATAATCAGTTTAGCATAATGCCAGATACGTACATAGCGGGCATCCGATAAAATGAAGGAAGAAAAGTACAGGGGAGGGGAAGGGAAAGtaggcaggcttaactttgttgggcttcagtttttcctctgtaaaatggagttggaccagatgctggtgaacatttcttcaaatctcccactctgacgttctGCTTCagaacctcagacataaaaggatttggagtgtcttccaggccgcctgcatgtttctctctgctggtaggcacagcccccaagcagtgaggatgtgtgatgcataaacacctccagaggaatcgttctactattgctcttgaacaattcttccagtgtttagaagctcttaaggcttaaata +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr6(+):159106769-159107268 +CCTTTGCAAAGCTTTTATTTCATGTCTGCGGCATGGAATCCACCTGCACATGGCATCTTAGCTGTGAAGGAGAAAGCAGTGCACGAGAAGGAATGAGTGGGCGGAACCAACGGCCTCCACAAGCTGCCTTCCAGCAGCCTGCCAAGGCCATGGCAGAGAGAGACTGCAAACAAACAAACACAAGCAAACAGAGTCTCTTCACAGCTGGAGTCTGAAAGCTCATAGTGGCATGTGTGAATCTGACAAAATTAAAAGTGTGCATAGTCCATTACATGCATAAAACACTAATAATAATCCTGTTTACACGTGACTGCAGCAGGCAGGTCCAGCTCCACCACTGCCCTCCTGCCACATCACATCAAGTGCCATGGTTTAGAGGGTTTTTCATATGTAATTCTTTTATTCTGTAAAAGGTAACAAAATATACAGAACAAAACTTTCCCTTTTTAAAACTAATGTTACAAATCTGTATTATCACTTGTATATAAATAGTATATAG +>mm8 +GCCTTGGAGAGCTTTTATTGTGTGTATCTGGTGCGGAGT-CACCCGCACAGGACATCACAACCAAGGAGGC-----TAGTCCGCGAAAGGAAGGAAG---------------------ACAAACTG-----------------AAAAC--GGGA----ACAAGTTGCTCACAA-----------TAAAGAGCGTCCCTTCAGGGCTGGAGTCTGGATGCTCTCGGTGTCAAATAAGAAACTGACAGAAATGGAAGTGTGCAT-----TTTACGTGCACAAAAC-CCACTAACATTTTTGTACAGTGGTGATTACTGCAGTCA---TCGGTTTCCCGACTGCCCCTGTG-----TCAGATCAAGTGTCTCGG-TTACATGGTTCTTAATGTTGAATTCTTTTATTCTGTAAAAGGTAACAAAATATACAGAACAAAACTTTCCCTTTTTAAAACTAATGTTACAAACCCATATTATCGCTTATATATAAATACTATATAG + +>hg18.chr6(+):159106768-159107267 +GCCTTTGCAAAGCTTTTATTTCATGTCTGCGGCATGGAATCCACCTGCACATGGCATCTTAGCTGTGAAGGAGAAAGCAGTGCACGAGAAGGAATGAGTGGGCGGAACCAACGGCCTCCACAAGCTGCCTTCCAGCAGCCTGCCAAGGCCATGGCAGAGAGAGACTGCAAACAAACAAACACAAGCAAACAGAGTCTCTTCACAGCTGGAGTCTGAAAGCTCATAGTGGCATGTGTGAATCTGACAAAATTAAAAGTGTGCATAGTCCATTACATGCATAAAACACTAATAATAATCCTGTTTACACGTGACTGCAGCAGGCAGGTCCAGCTCCACCACTGCCCTCCTGCCACATCACATCAAGTGCCATGGTTTAGAGGGTTTTTCATATGTAATTCTTTTATTCTGTAAAAGGTAACAAAATATACAGAACAAAACTTTCCCTTTTTAAAACTAATGTTACAAATCTGTATTATCACTTGTATATAAATAGTATATA +>mm8 +GGCCTTGGAGAGCTTTTATTGTGTGTATCTGGTGCGGAGT-CACCCGCACAGGACATCACAACCAAGGAGGC-----TAGTCCGCGAAAGGAAGGAAG---------------------ACAAACTG-----------------AAAAC--GGGA----ACAAGTTGCTCACAA-----------TAAAGAGCGTCCCTTCAGGGCTGGAGTCTGGATGCTCTCGGTGTCAAATAAGAAACTGACAGAAATGGAAGTGTGCAT-----TTTACGTGCACAAAAC-CCACTAACATTTTTGTACAGTGGTGATTACTGCAGTCA---TCGGTTTCCCGACTGCCCCTGTG-----TCAGATCAAGTGTCTCGG-TTACATGGTTCTTAATGTTGAATTCTTTTATTCTGTAAAAGGTAACAAAATATACAGAACAAAACTTTCCCTTTTTAAAACTAATGTTACAAACCCATATTATCGCTTATATATAAATACTATATA + +>hg18.chr6(+):159106766-159107265 +GTGCCTTTGCAAAGCTTTTATTTCATGTCTGCGGCATGGAATCCACCTGCACATGGCATCTTAGCTGTGAAGGAGAAAGCAGTGCACGAGAAGGAATGAGTGGGCGGAACCAACGGCCTCCACAAGCTGCCTTCCAGCAGCCTGCCAAGGCCATGGCAGAGAGAGACTGCAAACAAACAAACACAAGCAAACAGAGTCTCTTCACAGCTGGAGTCTGAAAGCTCATAGTGGCATGTGTGAATCTGACAAAATTAAAAGTGTGCATAGTCCATTACATGCATAAAACACTAATAATAATCCTGTTTACACGTGACTGCAGCAGGCAGGTCCAGCTCCACCACTGCCCTCCTGCCACATCACATCAAGTGCCATGGTTTAGAGGGTTTTTCATATGTAATTCTTTTATTCTGTAAAAGGTAACAAAATATACAGAACAAAACTTTCCCTTTTTAAAACTAATGTTACAAATCTGTATTATCACTTGTATATAAATAGTATA +>mm8 +AAGGCCTTGGAGAGCTTTTATTGTGTGTATCTGGTGCGGAGT-CACCCGCACAGGACATCACAACCAAGGAGGC-----TAGTCCGCGAAAGGAAGGAAG---------------------ACAAACTG-----------------AAAAC--GGGA----ACAAGTTGCTCACAA-----------TAAAGAGCGTCCCTTCAGGGCTGGAGTCTGGATGCTCTCGGTGTCAAATAAGAAACTGACAGAAATGGAAGTGTGCAT-----TTTACGTGCACAAAAC-CCACTAACATTTTTGTACAGTGGTGATTACTGCAGTCA---TCGGTTTCCCGACTGCCCCTGTG-----TCAGATCAAGTGTCTCGG-TTACATGGTTCTTAATGTTGAATTCTTTTATTCTGTAAAAGGTAACAAAATATACAGAACAAAACTTTCCCTTTTTAAAACTAATGTTACAAACCCATATTATCGCTTATATATAAATACTATA + +>hg18.chr9(+):111041832-111042331 +ttaagcagagaggtatttattagagggtattatatggcatacacaatttccaggagcccacagataagggtttggatgccttcctgccaggaagagcacaagtagccaggacaaacacgtacctttacaggactattactgaggaaatcccactgccaccactTCTCTCTACTCAGCACCTGTGACAGGCAGGACAACCTTCACCAGAGTTGCCCCAGATGAAGAAAGGCATCAGCTGCTGTGCCTATAAGATCCACTCTTGCCAAGAGCAGCCTCATTCTAGGATGATCTTGCTCCACCCACCTAACTGAATGCTCACCTTCAGACTTCCAAAAGCCAACTGTTCTGTTACCAAGGTCATTCACAAATGAGACTTCTGCATAGCAACAAGAATCAATTTAAAAAAAATGAAGATGGAGTCAAAAAAAAAGCAAGAATAATCTTTATTCCTTGGAAACACATTTGTAAAAATGCTATCAATAAGATGAAAAGATTCAGA +>mm8 +TTAAGCAGAAGG--CTTTGATCGA----------------GGATCATCTTTAAGAAGCCACAGACAGA-----------------GCCAAGAAGAG-GTAAGCAACCACGAGAAGGTGTACCCGTCACAGGACTGTTATCAGGGAACACCCA-------GGTGTCTCTCTGCTCTGCACATGGAACAGGTACTGCAGCCTCTTCCAGAAGCGCATCGG---GAGAATCACCCCAGTCACTGTACCTATA-------------------GGAGCCTCAGTGAAGGATGGTTTTGTCCCAACCACATAACTGAAGGTTCACCTTCGGA-CACCCTGAGTCAACTGTACCATGAGTGAGATCA-----AAGGGAGGCTTCTGTGCAG----AAGAATCAAC------GCAATGAAGATGGAGTCCAAAAAAAAACAAGAATAATCTTTATTACTTGGAGACACA-TTGTAAAAATGTTAGCAGTAAGATGAAGAGACCCAGA + +>hg18.chr9(+):110974075-110974574 +GAAACCATGGAATCCTCTTATTTTACTGGTTAGAGGTGAGCTGCCAAAGGTACTGGGTTTCAAATACAGTAACAGCCAACTTGTTTGTGGTCAGACTTCCAGTGACGTCAACCTTCAGAAACTTCAACATCTGTGAACTCTGGGGGAAGCGGGGAAGAAGCAGGAAGCCCAGAGCCTCCTGGAAACACTGGCCAAAAAGCCCATGCATCCCTTCTTGGAAGCCAAGCAGATCTGACACATAGGAAATACTGGCTTTCCTGGCTTCCCCAAGAAACCTTCAGCTTTGCCCTGGAGGTTTCCATCAGCGAGCAGGAGGTGAAGAGCAGAAGCCTCAGAAAGCAGGTTAGAAGAGGAAGAGGGTGCTGGGTTGGCAAGAAGTGACAGCCCCATATTGTACGGGAACATATTTTGTATCATGTGCACAAGATAAAGAACAGCTAAAGCTGTTTTAAAAGTATAGCCGGGGGACATAGGGGTAAAAGGACCCAAACGCTACAAT +>mm8 +GC---CAC----TCCT---------CTCCTTGGGA-TGAACTGCCTGCGGTTCTGGGTTGCACATACAAGAGCAACCAGCATGTTTGTGCTCAGGTTTGCAGGGATGTCCACCCACTGAGACT------CTTGTGAGCCCAGGGAGAGGTGGGGACAAGGTAGGAGCTTGCAAGCCTCCTGAACGCAGCGGCTAGAACCTCCATGCACACCTACCTAGGAACAAATCAAGTCAGACTCGTGGGATACACAT-GTGGCCCGAAAG-CTCCGGAAACCTTCTGCTGTGTTCTGGAGGCTTCCATCTGAGAGCAAGG-GGGAGGAGTGCACACTGCAGAGAGCAGCTCAGAAGAGGAAGCAGCTGCTGGGTTGGCAGGAGGTGACAACCCTGTGTTCTATAGGAACATGGTTTGTGTCACGTGCACATGATAGAGGACAGCCAAAGCCATTTTGCTAGTA-ATCTAGGGGCTTCGTGAGTAAAAAGACCCAAAAACTCCACT + +>hg18.chr10(+):94822723-94823222 +ccttcctcttataccgtctctttatcctgccaGGGCTAAGGACCCCCTTCCCTGCTGTCCAGCTGGGGCGCCAAGCAGCAGGGCCCTCCGAATAGGCGAGCTGTGCTTGGATCTCAGAGACGGGCACCGACTGCCGAGCCCCAGACGAAGTGCCCCAGGGTCGGGGATCAGGCTTGTGCAGGGTAGCACCTGGGGACCTGAGGGACCTGGAGGCCTTCTTGTATCCTGAAGTAGGACCTTCTAAGACTTCATGAGTCCTGGCCCCCTTGCAGGGGTTGGGGAGCTGGGGATCCCAGATCTGCCTATTGCGCCCGATGCCCCGAGGCTCTCTCTTGGACTCTGGCCCTGAGTTCTTCTGCGCGATCCTTCGGAGACGTCTGGAGGCCTGCTTTATGcatctctcttggacctcagtttccccacacgtgggaggaggcagctggacgattcctgaaaggactttccCTTGCTTCCTCATCACGTGGAAGAGAGCCCACCC +>mm8 +CTCCCTGTATTC-----CTCCCCATTCTGCCTGGACTGGGGGCCCTCTTCCCGGCCGCTTGGCTGAGGTTGCAAGCCCCAGGGCTATAGGAATGGGCCGGCTTGGCGGTATTACTACAGTGGAG-GTTGACTTTGGAGCCTCTGGTACCAGGGCTTAGAGAAGGGAGTCAGGCATGTGCAAGGCTGCACCTGGGGGCCC-AGAGACCTGGAGGCTTCTTTGAACTCGAAAGCAGGATTTTCCAAGTCTTCATGCGC-TGGCTCGCCTGTGGGGCCCTGGAAAGCTAGCG-TCCACGATCCGCCAGTCATACTTGACCTCCGAGACCG---GCTAGGACCCTCGCCCTGGGATCTTCTT-GGGATCCTCCAGA----TCAGGAAGCGT---------------TTGGAATCTCATTTACTCAACCGGTGGGTCAAGTCCATTGGATGATTCTTGAACGC----------GCTTTCCAAGCCAATGGAAAAGAGCCCACGA + +>hg18.chr10(+):94823138-94823637 +ttccccacacgtgggaggaggcagctggacgattcctgaaaggactttccCTTGCTTCCTCATCACGTGGAAGAGAGCCCACCCGGCACCTGGAAATGGAAAGCCAGTGAAGGCTGCTTTGGGCCGGGGCAGCGGGTGGGACCGGGCGGGAGGGATTCCAAAGAGACCGCCGGGAAGGCTAGAGCTTGGAATTCCGGCTCCTCGGAGTCCTGGCCCTCCCCCACCGCCGCCTCGGAGCTCAGCACACCTTGGATGGGGGAGGCGGGCAGCTCCTAGCCCCGCACCCCAGGAGGCGCGCTCGGAGGGAAGCCGCCACCGCGCCGCCTCTGCCTCGGCGCGGAACAAACGGTTAAAGATTTTGGGCAGCGCCTCGCGGGGGGAGGAGCCAGGGGCCCAATCCGCAATTAAAGATGAACTTTGGGTGAACTAATTGTCTGACCAAGGTAACGTGGGCAGCAACCTGGGCCGCCTATAAAGCGGCAGCGCCGTGGGGTTTGAA +>mm8 +TACTCAACCGGTGGGTCAAGTCCATTGGATGATTCTTGAACGC----------GCTTTCCAAGCCAATGGAAAAGAGCCCACGAGGCGCCTGTGAATGGTGAGCTGG----GAAGGCTTCGGGCTCGGGCAGCTGGTTCGACCCGGCTCGAGGGACAGCAGAGAGACAGCTAGGAAACCCAGGACTCCAAATTCCCACTTCTTGGAACCCCGACTCCCCCCCCCCGCCGCCTCGGAGCTCTGCACACCTAGGACAAGGAAAGAGGTG--TTCCTAGTCCCGCACCCCAGGAGGCGCGCTCAGAGGGAAGCCGCCAGTGCGCCGCCTCTGCCTCGGCGCGGAACAAACGGTTAAAGATTTTGGGCAGCGCCTCGAGGGGGGAGGAGCCAGGGGCCCGATCCGCAATTAAAGATGAACTTTGGGTGAACTAATTGTCTGACCAAGGTAACGTGGGCAGTAACCTGGGCGGCCTATAAAGAGGGCGCGCGGCGGGGTTCGGA + +>hg18.chr10(+):29005931-29006430 +CCGCCTCCCCCGGGCTCCCACCCGAACCCTCCTCCGCCACCTGCACAGGCCGGGGCATTGTCACTCGCCCCTGGGGGTTCCAGAAAACGCAGTGCGGCCGGGGAGGACGACCACACGGACCCCCTGCGTGTTTCGGGGGGCACCCAAAAGAAGCCCCGCGCTGGGGAACGCTGACCACCCGAGGCTGAGCCGTCAGGGTCTCGGAGGCGGGTTCCCGAGCCGGTCCCGGGGCTGGGCTCCCCCGGCGCCTCGCGAAGGTCACTGACGCGCAGGCCTCCGCAAGGGGGAGCGCGGGAGACGGCAGCGCACCAGCCGGGCGCCCCAGCCGGGCGCCCCAGACGCCGGCGCCGCTCGGAGCCGCCGGGCAGGTCCCCCAGCGCTCGCGTCTGGGCCCGCCCCCCGCTGCGGGGCGGATTGACAGGAGCCCGGCGGCCAATCGGACGCCGTggggcggggcgaggcggggcggtgcaggccggCTCCCGGCGCGGGGCGCTAT +>mm8 +CTGCCCCTTCTTGACTATCACCCTACTCCTCCTCGGCCA--CGCGCGGGCGGGCGTATTGTTACATGGCCCTGGTGGTTTCGGCAACCGAAGTATGGCCGAGGATGATGACTACTGAGATCCCTTGCAGGTTTCAGGTGGGACAAAAGCGAAGCCACGTGCTGGAGGCCGCTGACCA---GAGACTGAGCAGTGAGGGTCTCGTAGCAAA--CTCCGAACCTATCTAGAAGAGGGGCT-CTGCGACGCATAT--GAGGCTGT--TCGCGCAGGCGTTCGCTAGGGGGAGTGCT-----------------------GCGGCCGTGTCCACAGTGCTACTTGCCAGCGCCAGCGGGAGCCCGGCGGCTTGTCTGCCTTAGCCCGCGTCTGGCCCCGCCCCCTGCGGCTGGGCCCTGGGGCTAGAG-GCGTCCGCCAATCGGAGAGTG-GAGGCGGGGCAGGGCGGGGCCGCGCTGGCCCACTCTGGGCGCCGGGCGCTAT + diff -r 973d6cbeea87 -r 77f8bf51b2ae tools/maf/interval_maf_to_merged_fasta.py --- a/tools/maf/interval_maf_to_merged_fasta.py Thu Aug 21 16:49:16 2008 -0400 +++ b/tools/maf/interval_maf_to_merged_fasta.py Fri Aug 22 10:39:58 2008 -0400 @@ -33,17 +33,23 @@ assert sys.version_info[:2] >= ( 2, 4 ) +def stop_err( msg ): + sys.stderr.write( msg ) + sys.exit() + def __main__(): #Parse Command Line options, args = doc_optparse.parse( __doc__ ) mincols = 0 - - if options.dbkey: primary_species = options.dbkey - else: primary_species = None + strand_col = -1 + + if options.dbkey: + primary_species = options.dbkey + else: + primary_species = None if primary_species in [None, "?", "None"]: - print >>sys.stderr, "You must specify a proper build in order to extract alignments. You can specify your genome build by clicking on the pencil icon associated with your interval file." - sys.exit() + stop_err( "You must specify a proper build in order to extract alignments. You can specify your genome build by clicking on the pencil icon associated with your interval file." ) include_primary = True if options.species: @@ -52,43 +58,40 @@ secondary_species = None species = None else: - try: secondary_species.remove( primary_species ) - except: include_primary = False + try: + secondary_species.remove( primary_species ) + except: + include_primary = False species = [primary_species] + secondary_species - if options.interval_file: interval_file = options.interval_file + if options.interval_file: + interval_file = options.interval_file else: - print >>sys.stderr, "Input interval file has not been specified." - sys.exit() + stop_err( "Input interval file has not been specified." ) - if options.output_file: output_file = options.output_file + if options.output_file: + output_file = options.output_file else: - print >>sys.stderr, "Output file has not been specified." - sys.exit() + stop_err( "Output file has not been specified." ) if not options.geneBED: if options.chromCol: chr_col = int( options.chromCol ) - 1 else: - print >>sys.stderr, "Chromosome column not set, click the pencil icon in the history item to set the metadata attributes." - sys.exit() + stop_err( "Chromosome column not set, click the pencil icon in the history item to set the metadata attributes." ) if options.startCol: start_col = int( options.startCol ) - 1 else: - print >>sys.stderr, "Start column not set, click the pencil icon in the history item to set the metadata attributes." - sys.exit() + stop_err( "Start column not set, click the pencil icon in the history item to set the metadata attributes." ) if options.endCol: end_col = int( options.endCol ) - 1 else: - print >>sys.stderr, "End column not set, click the pencil icon in the history item to set the metadata attributes." - sys.exit() - + stop_err( "End column not set, click the pencil icon in the history item to set the metadata attributes." ) + if options.strandCol: strand_col = int( options.strandCol ) - 1 - else: - strandCol = -1 mafIndexFile = "%s/maf_index.loc" % options.mafIndexFileDir #Finish parsing command line @@ -99,21 +102,17 @@ if options.mafSourceType.lower() in ["cached"]: index = maf_utilities.maf_index_by_uid( options.mafSource, mafIndexFile ) if index is None: - print >> sys.stderr, "The MAF source specified (%s) appears to be invalid." % ( options.mafSource ) - sys.exit() + stop_err( "The MAF source specified (%s) appears to be invalid." % ( options.mafSource ) ) elif options.mafSourceType.lower() in ["user"]: #index maf for use here, need to remove index_file when finished index, index_filename = maf_utilities.build_maf_index( options.mafSource, species = [primary_species] ) if index is None: - print >> sys.stderr, "Your MAF file appears to be malformed." - sys.exit() + stop_err( "Your MAF file appears to be malformed." ) else: - print >> sys.stderr, "Invalid MAF source type specified." - sys.exit() + stop_err( "Invalid MAF source type specified." ) #open output file output = open( output_file, "w" ) - if options.geneBED: region_enumerator = maf_utilities.line_enumerator( open( interval_file, "r" ).readlines() ) diff -r 973d6cbeea87 -r 77f8bf51b2ae tools/maf/interval_maf_to_merged_fasta.xml --- a/tools/maf/interval_maf_to_merged_fasta.xml Thu Aug 21 16:49:16 2008 -0400 +++ b/tools/maf/interval_maf_to_merged_fasta.xml Fri Aug 22 10:39:58 2008 -0400 @@ -56,6 +56,13 @@ </outputs> <tests> <test> + <param name="input1" value="13.bed" dbkey="hg18" ftype="bed"/> + <param name="maf_source" value="cached"/> + <param name="maf_identifier" value="17_WAY_MULTIZ_hg18"/> + <param name="species" value="hg18,mm8"/> + <output name="out_file1" file="interval_maf_to_merged_fasta_out3.fasta" /> + </test> + <test> <param name="input1" value="1.bed" dbkey="hg17" ftype="bed"/> <param name="maf_source" value="cached"/> <param name="maf_identifier" value="8_WAY_MULTIZ_hg17"/>

1 0

[hg] galaxy 1475: (no commit message)
by greg＠scofield.bx.psu.edu 21 Aug '08

21 Aug '08

details: http://www.bx.psu.edu/hg/galaxy/rev/973d6cbeea87 changeset: 1475:973d6cbeea87 user: Greg Von Kuster <greg(a)bx.psu.edu> date: Thu Aug 21 16:49:16 2008 -0400 description: (no commit message) 1 file(s) affected in this change: tools/extract/extract_genomic_dna.xml diffs (12 lines): diff -r cea8c4d68ad0 -r 973d6cbeea87 tools/extract/extract_genomic_dna.xml --- a/tools/extract/extract_genomic_dna.xml Thu Aug 21 08:54:51 2008 -0400 +++ b/tools/extract/extract_genomic_dna.xml Thu Aug 21 16:49:16 2008 -0400 @@ -4,7 +4,7 @@ <inputs> <param format="interval" name="input" type="data" label="Fetch sequences corresponding to Query"> <validator type="unspecified_build" /> - <validator type="dataset_metadata_in_file" filename="alignseq.loc" metadata_name="dbkey" metadata_column="1" message="Sequences are not currently available for the specified build." split=" " line_startswith="seq" /> + <validator type="dataset_metadata_in_file" filename="alignseq.loc" metadata_name="dbkey" metadata_column="1" message="Sequences are not currently available for the specified build." split="\t" line_startswith="seq" /> </param> <param name="out_format" type="select" label="Output data type"> <option value="fasta">FASTA</option>

1 0

Main is at rev 1474:cea8c4d68ad0
by Greg Von Kuster 21 Aug '08

21 Aug '08

1 0

[hg] galaxy 1474: Reverting extract_genomic_dna and blat_wrapper...
by greg＠scofield.bx.psu.edu 21 Aug '08

21 Aug '08

details: http://www.bx.psu.edu/hg/galaxy/rev/cea8c4d68ad0 changeset: 1474:cea8c4d68ad0 user: Greg Von Kuster <greg(a)bx.psu.edu> date: Thu Aug 21 08:54:51 2008 -0400 description: Reverting extract_genomic_dna and blat_wrapper tools to rev 1472. 2 file(s) affected in this change: tools/extract/extract_genomic_dna.py tools/metag_tools/blat_wrapper.py diffs (42 lines): diff -r 8cda62b46162 -r cea8c4d68ad0 tools/extract/extract_genomic_dna.py --- a/tools/extract/extract_genomic_dna.py Tue Aug 19 13:35:44 2008 -0400 +++ b/tools/extract/extract_genomic_dna.py Thu Aug 21 08:54:51 2008 -0400 @@ -35,7 +35,7 @@ for line in open( nib_file ): line = line.rstrip( '\r\n' ) if line and not line.startswith( "#" ) and line.startswith( 'seq' ): - fields = line.split() + fields = line.split( '\t' ) if len( fields ) < 3: continue if fields[1] == dbkey: @@ -49,7 +49,7 @@ for line in open( twobit_file ): line = line.rstrip( '\r\n' ) if line and not line.startswith( "#" ): - fields = line.split() + fields = line.split( '\t' ) if len( fields ) < 2: continue if fields[0] == dbkey: diff -r 8cda62b46162 -r cea8c4d68ad0 tools/metag_tools/blat_wrapper.py --- a/tools/metag_tools/blat_wrapper.py Tue Aug 19 13:35:44 2008 -0400 +++ b/tools/metag_tools/blat_wrapper.py Thu Aug 21 08:54:51 2008 -0400 @@ -15,7 +15,7 @@ for i, line in enumerate( file( nib_file ) ): line = line.rstrip( '\r\n' ) if line and not line.startswith( "#" ): - fields = line.split() + fields = line.split( '\t' ) if len( fields ) < 3: continue if fields[0] == 'seq': @@ -31,7 +31,7 @@ for i, line in enumerate( file( twobit_file ) ): line = line.rstrip( '\r\n' ) if line and not line.startswith( "#" ): - fields = line.split() + fields = line.split( '\t' ) if len( fields ) < 2: continue twobits[( fields[0] )] = fields[1]

1 0

[hg] galaxy 1473: Unbreaking 2 tools that I just broke.
by greg＠scofield.bx.psu.edu 19 Aug '08

19 Aug '08

details: http://www.bx.psu.edu/hg/galaxy/rev/8cda62b46162 changeset: 1473:8cda62b46162 user: Greg Von Kuster <greg(a)bx.psu.edu> date: Tue Aug 19 13:35:44 2008 -0400 description: Unbreaking 2 tools that I just broke. 2 file(s) affected in this change: tools/extract/extract_genomic_dna.py tools/metag_tools/blat_wrapper.py diffs (42 lines): diff -r c81fa25c67e5 -r 8cda62b46162 tools/extract/extract_genomic_dna.py --- a/tools/extract/extract_genomic_dna.py Tue Aug 19 10:44:08 2008 -0400 +++ b/tools/extract/extract_genomic_dna.py Tue Aug 19 13:35:44 2008 -0400 @@ -35,7 +35,7 @@ for line in open( nib_file ): line = line.rstrip( '\r\n' ) if line and not line.startswith( "#" ) and line.startswith( 'seq' ): - fields = line.split( '\t' ) + fields = line.split() if len( fields ) < 3: continue if fields[1] == dbkey: @@ -49,7 +49,7 @@ for line in open( twobit_file ): line = line.rstrip( '\r\n' ) if line and not line.startswith( "#" ): - fields = line.split( '\t' ) + fields = line.split() if len( fields ) < 2: continue if fields[0] == dbkey: diff -r c81fa25c67e5 -r 8cda62b46162 tools/metag_tools/blat_wrapper.py --- a/tools/metag_tools/blat_wrapper.py Tue Aug 19 10:44:08 2008 -0400 +++ b/tools/metag_tools/blat_wrapper.py Tue Aug 19 13:35:44 2008 -0400 @@ -15,7 +15,7 @@ for i, line in enumerate( file( nib_file ) ): line = line.rstrip( '\r\n' ) if line and not line.startswith( "#" ): - fields = line.split( '\t' ) + fields = line.split() if len( fields ) < 3: continue if fields[0] == 'seq': @@ -31,7 +31,7 @@ for i, line in enumerate( file( twobit_file ) ): line = line.rstrip( '\r\n' ) if line and not line.startswith( "#" ): - fields = line.split( '\t' ) + fields = line.split() if len( fields ) < 2: continue twobits[( fields[0] )] = fields[1]

1 0

Main is at rev 1472:c81fa25c67e5
by Greg Von Kuster 19 Aug '08

19 Aug '08

1 0

[hg] galaxy 1472: Some tool fixes:
by Nate Coraor 19 Aug '08

19 Aug '08

details: http://www.bx.psu.edu/hg/galaxy/rev/c81fa25c67e5 changeset: 1472:c81fa25c67e5 user: Greg Von Kuster <greg(a)bx.psu.edu> date: Tue Aug 19 10:44:08 2008 -0400 description: Some tool fixes: 1) fix for interval_maf_to_merged_fasta when strand column not included in input metadata 2) Tools using alignseq.loc now split on TAB rather than wihite space 3 file(s) affected in this change: tools/extract/extract_genomic_dna.py tools/maf/interval_maf_to_merged_fasta.py tools/metag_tools/blat_wrapper.py diffs (84 lines): diff -r 1958657d8f8d -r c81fa25c67e5 tools/extract/extract_genomic_dna.py --- a/tools/extract/extract_genomic_dna.py Tue Aug 12 10:04:28 2008 -0400 +++ b/tools/extract/extract_genomic_dna.py Tue Aug 19 10:44:08 2008 -0400 @@ -35,7 +35,7 @@ for line in open( nib_file ): line = line.rstrip( '\r\n' ) if line and not line.startswith( "#" ) and line.startswith( 'seq' ): - fields = line.split() + fields = line.split( '\t' ) if len( fields ) < 3: continue if fields[1] == dbkey: @@ -49,7 +49,7 @@ for line in open( twobit_file ): line = line.rstrip( '\r\n' ) if line and not line.startswith( "#" ): - fields = line.split() + fields = line.split( '\t' ) if len( fields ) < 2: continue if fields[0] == dbkey: diff -r 1958657d8f8d -r c81fa25c67e5 tools/maf/interval_maf_to_merged_fasta.py --- a/tools/maf/interval_maf_to_merged_fasta.py Tue Aug 12 10:04:28 2008 -0400 +++ b/tools/maf/interval_maf_to_merged_fasta.py Tue Aug 19 10:44:08 2008 -0400 @@ -67,25 +67,29 @@ sys.exit() if not options.geneBED: - if options.chromCol: chr_col = int( options.chromCol ) - 1 + if options.chromCol: + chr_col = int( options.chromCol ) - 1 else: - print >>sys.stderr, "Chromosome column has not been specified." + print >>sys.stderr, "Chromosome column not set, click the pencil icon in the history item to set the metadata attributes." sys.exit() - if options.startCol: start_col = int( options.startCol ) - 1 + if options.startCol: + start_col = int( options.startCol ) - 1 else: - print >>sys.stderr, "Start column has not been specified." + print >>sys.stderr, "Start column not set, click the pencil icon in the history item to set the metadata attributes." sys.exit() - if options.endCol: end_col = int( options.endCol ) - 1 + if options.endCol: + end_col = int( options.endCol ) - 1 else: - print >>sys.stderr, "End column has not been specified." + print >>sys.stderr, "End column not set, click the pencil icon in the history item to set the metadata attributes." sys.exit() - if options.strandCol: strand_col = int( options.strandCol ) - 1 + if options.strandCol: + strand_col = int( options.strandCol ) - 1 else: - print >>sys.stderr, "Strand column has not been specified." - sys.exit() + strandCol = -1 + mafIndexFile = "%s/maf_index.loc" % options.mafIndexFileDir #Finish parsing command line diff -r 1958657d8f8d -r c81fa25c67e5 tools/metag_tools/blat_wrapper.py --- a/tools/metag_tools/blat_wrapper.py Tue Aug 12 10:04:28 2008 -0400 +++ b/tools/metag_tools/blat_wrapper.py Tue Aug 19 10:44:08 2008 -0400 @@ -15,7 +15,7 @@ for i, line in enumerate( file( nib_file ) ): line = line.rstrip( '\r\n' ) if line and not line.startswith( "#" ): - fields = line.split() + fields = line.split( '\t' ) if len( fields ) < 3: continue if fields[0] == 'seq': @@ -31,7 +31,7 @@ for i, line in enumerate( file( twobit_file ) ): line = line.rstrip( '\r\n' ) if line and not line.startswith( "#" ): - fields = line.split() + fields = line.split( '\t' ) if len( fields ) < 2: continue twobits[( fields[0] )] = fields[1]

1 0

New (reckless) tools
by Assaf Gordon 18 Aug '08

18 Aug '08

Hello, I'd like to share three tools that I've recently made. One is semi-useful, the other too are completely reckless. The first one is an improved "sort" tool, which allows sorting according to multiple keys. it uses the GNU sort utility, and therefor doesn't need a script file (except for the XML itself). BEGIN SORT TOOL --------------- <tool id="cshl_sort_tool" name="Sort"> <command>sort #for $key in $sortkeys '-k ${key.column},${key.column}${key.order}${key.style}' #end for $input > $out_file1</command> <inputs> <param format="txt" name="input" type="data" label="Sort Query" /> <repeat name="sortkeys" title="sort key"> <param name="column" label="on column" type="data_column" data_ref="input" accept_default="true" /> <param name="order" type="select" display="radio" label="in"> <option value="r">Descending order</option> <option value="">Ascending order</option> </param> <param name="style" type="select" display="radio" label="Flavor"> <option value="n">Numerical sort</option> <option value="">Alphabetical sort</option> </param> </repeat> </inputs> <outputs> <data format="input" name="out_file1" metadata_source="input"/> </outputs> </tool> -------------- END SORT TOOL The two other tools allow running AWK and SED directly from galaxy. These should NEVER EVER be installed on a publicly accessible system (as a matter of fact, these shouldn't be install on any system... ) The reason I wrote these tools, is that sometimes the galaxy tools just can't do something which would be very simple to do, if I just had access to sed or awk. This usually happens when biologists here work on galaxy, and get 'stuck' trying to do something which just can't be done with the current galaxy tools. Then they ask me to do it. One way (for me) to do it is to SSH into the galaxy server, get the dataset file, run sed/awk, create a new file, and manually upload it back to galaxy. Another way is to run awk and sed from within galaxy... I won't say this is the most elegant solution ever - but it gets the job done. Note about security: With these tools - there is NONE. An AWK script can execute shell commands (the 'system' function) and can read any local file (the 'getline' command). A SED script can read files (the 'r' command) and write files (the 'w' command). The 'password' field is completely useless. The password is not hidden, and the web browser will probably cache it and display it the next time you access the tool's page. BEGIN AWK TOOL -------------- <tool id="cshl_awk_tool" name="awk"> <command>awk '$url_paste' OFS="\t" $input > $output </command> <inputs> <param format="txt" name="input" type="data" label="File to process" />  <param name="url_paste" type="text" area="true" size="5x35" label="AWK Program" help=""> <validator type="expression" message="Invalid Program!">value.find('\'')==-1</validator> </param>  <param name="passwd" type="text" area="false" label="Secret password"> <validator type="regex" message="Oops! wrong password.">^awk$</validator> </param> </inputs> <outputs> <data format="txt" name="output" metadata_source="input" /> </outputs> </tool> -------------- END AWK TOOL BEGIN SED TOOL -------------- <tool id="cshl_sed_tool" name="sed"> <command>sed '$url_paste' $input > $output </command> <inputs> <param format="txt" name="input" type="data" label="File to process" />  <param name="url_paste" type="text" area="true" size="5x35" label="SED Program" help=""> <validator type="expression" message="Invalid Program!">value.find('\'')==-1</validator> </param>  <param name="passwd" type="text" area="false" label="Secret password"> <validator type="regex" message="Oops! wrong password.">^sed$</validator> </param> </inputs> <outputs> <data format="txt" name="output" metadata_source="input" /> </outputs> </tool> -------------- END SED TOOL The above XML snippets are free for use under the same license as galaxy (the LICENSE.txt file). -Gordon.

1 0

2024

2023

2022

2021

2020

2019

2018

2017

2016

2015

2014

2013

2012

2011

2010

2009

2008

galaxy-dev August 2008