Hi, I am trying to set up a MySQL database on our computer cluster as
a backend to Galaxy. I had no trouble with this conversion on our
local server installation but now I am faced with an error.
The full traceback is below, I'm not really sure what the problem is.
If any one could give me some idea that would be great.
Thanks
Shaun Webb
galaxy.model.migrate.check INFO 2010-06-04 16:16:40,360 No database,
initializing
Traceback (most recent call last):
File
"/exports/work/biology_cell_galaxy/galaxy/lib/galaxy/web/buildapp.py",
line 61, in app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
File "/exports/work/biology_cell_galaxy/galaxy/lib/galaxy/app.py",
line 28, in __init__
create_or_verify_database( db_url, self.config.database_engine_options )
File
"/exports/work/biology_cell_galaxy/galaxy/lib/galaxy/model/migrate/check.py",
line 67, in create_or_verify_database
migrate_to_current_version( engine, db_schema )
File
"/exports/work/biology_cell_galaxy/galaxy/lib/galaxy/model/migrate/check.py",
line 108, in migrate_to_current_version
changeset = schema.changeset( None )
File
"/exports/work/biology_cell_galaxy/galaxy/eggs/py2.4-noplatform/sqlalchemy_migrate-0.5.4-py2.4.egg/migrate/versioning/schema.py", line 173, in
changeset
changeset = self.repository.changeset(database, start_ver, version)
File
"/exports/work/biology_cell_galaxy/galaxy/eggs/py2.4-noplatform/sqlalchemy_migrate-0.5.4-py2.4.egg/migrate/versioning/repository.py", line 170, in
changeset
changes = [self.version(v).script(database, op) for v in versions]
File
"/exports/work/biology_cell_galaxy/galaxy/eggs/py2.4-noplatform/sqlalchemy_migrate-0.5.4-py2.4.egg/migrate/versioning/version.py", line 161, in
script
assert ret is not None
AssertionError
--
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.