Hi
I just blew everything up, I have no idea why. Galaxy doesn't start
anymore. When I run the run.sh script, it stops after loading the
converters and just crashes. Here's the traceback:
Traceback (most recent call last):
File "/home/galaxy/galaxy-dev/lib/galaxy/web/buildapp.py", line 82,
in app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
File "/home/galaxy/galaxy-dev/lib/galaxy/app.py", line 52, in __init__
load_history_imp_exp_tools( self.toolbox )
File "/home/galaxy/galaxy-dev/lib/galaxy/tools/imp_exp/__init__.py",
line 34, in load_history_imp_exp_tools
history_exp_tool = toolbox.load_tool( tmp_name.name )
File "/home/galaxy/galaxy-dev/lib/galaxy/tools/__init__.py", line
131, in load_tool
tree = util.parse_xml( config_file )
File "/home/galaxy/galaxy-dev/lib/galaxy/util/__init__.py", line 104,
in parse_xml
tree = ElementTree.parse(fname)
File
"/home/galaxy/galaxy-dev/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py",
line 859, in parse
tree.parse(source, parser)
File
"/home/galaxy/galaxy-dev/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py",
line 584, in parse
self._root = parser.close()
File
"/home/galaxy/galaxy-dev/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py",
line 1251, in close
self._parser.Parse("", 1) # end of data
ExpatError: no element found: line 1, column 0
Exception IOError: (28, 'No space left on device') in <bound method
_TemporaryFileWrapper.__del__ of <closed file '<fdopen>', mode 'w+b' at
0x8539a50>> ignored
Since the message is not really self-explanatory, I have no idea as to
what's gone wrong. The only thing I know is that the file referred by
tmp_name.name is empty. Do you have an idea where I should be looking?
I really can't relate that to anything I did recently, I just modified
some parameter labels in two tools, which should be really harmless, and
the display name of a reference genome, which shouldn't make any
difference either.
Thanks,
L-A