galaxy-dev October 2012

galaxy-dev@lists.galaxyproject.org

108 participants
212 discussions

pass more information on a dataset merge
by Jorrit Boekel 16 Oct '12

16 Oct '12

Dear list, I thought I was working with fairly large datasets, but they have recently started to include ~2Gb files in sets of >50. I have ran these sort of things before as merged data by using tar to roll them up in one set, but when dealing with >100Gb tarfiles, Galaxy on EC2 seems to get very slow, although that's probably because of my implementation of dataset type detection (untar and read through files). Since tarring/untarring isn't very clean, I want to switch from tarring to creating composite files on merge by putting a tool's results into the dataset.extra_files_path. This doesn't seem to be supported yet, because we currently pass in do_merge the output dataset.filename to the respective datatype's merge method. I would like to pass more data to the merge method (let's say the whole dataset object) to be able to get the composite files directory and 'merge' the files in there. Good idea, bad idea? If anyone has views on this, I'd love to hear them. cheers, jorrit

4 4

picard bug in Add or Replace Groups
by David Hoover 16 Oct '12

16 Oct '12

In the Add or Replace Groups tool for picard, if the read group platform unit is left blank, the read group sample name is lost as well. Must all the read group tags be set with this tool? Can some of them remain blank? David Hoover Helix Systems Staff, CIT/NIH

1 0

CCAT Tool Error
by Kyle Chessman 16 Oct '12

16 Oct '12

When running CCAT I get: Error running CCAT. Traceback (most recent call last): File "/opt/Galaxy/tools/peak_calling/ccat_wrapper.py", line 44, in <module> if __name__ == "__main__": main() File "/opt/Galaxy/tools/peak_calling/ccat_wrapper.py", line 41, in main return stop_err( tmp_dir, e ) File "/opt/Galaxy/tools/peak_calling/ccat_wrapper.py", line 15, in stop_err raise exception IOError: [Errno 2] No such file or directory: '/tmp/tmpc3sfYR/CCAT in Galaxy.significant.peak' I'm using the latest galaxy-dist and have the CCAT binary in /usr/local/bin. Nothing gets put into the temp directory while CCAT is running. Any ideas? Thanks, Kyle

1 1

BOSC/Broad Interoperability Hackathon: potential dates
by Brad Chapman 15 Oct '12

15 Oct '12

Hi all; Open Bio regularly organizes hackathon coding sessions in conjunction with the Bioinformatics Open Source Conference. The goal is to get together biologists writing open source code, provide a room and internet, and encourage fun collaborative coding. We've had successful two day Codefests the past three years: http://www.open-bio.org/wiki/Codefest_2012 This year, the Broad Institute kindly offered to host a two day Hackathon in Boston during April. We've proposed three sets of dates: April 4-5th, Thursday and Friday before Bio-IT April 7-8th, Sunday and Monday before Bio-IT April 22-23rd, Monday and Tuesday If you have interest in attending, please fill out this Doodle poll to let us know which dates work best: http://doodle.com/aapy694g43e6ya4f If you can find funds for travel and hotel (or are local to Boston), the event is free and everyone is welcome. As we finalize dates, we'll send around additional details. Thanks everyone, Brad

1 0

Anybody knows how to disable daily digest for this email list?
by Joachim Jacob 15 Oct '12

15 Oct '12

I really could not find this. Anybody willing to show me? :-) Cheers, Joachim BTW: pity that they disabled the issue tracker on BitBucket... Hope it will be replaced by something similar soon. I feel like this community needs an issue tracker, besides a help communication channel like this email list. -- Joachim Jacob, PhD Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib

2 2

Server Error when attempting to access "User preferences/Manage your information"
by Peter Briggs 15 Oct '12

15 Oct '12

Hello I'm encountering a "Server Error" when attempting to access the "Manage your information" link from the "User preferences" page. This appears to happen on local instances (all vanilla galaxy-dist clones of changeset 7828:b5bda7a5c345) and also on the Galaxy Main site (both for me and for another user). The error reported from my local version is "RuntimeError: maximum recursion depth exceeded in cmp"; the complete stack trace is below. Apologies if this has already been reported, I couldn't see anything in the mailing list. Thanks for your help! Best wishes, Peter _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 414 in __init__ self_ns=self) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 637 in _populate_self_namespace ret = template.module._mako_inherit(template, context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 31 in _mako_inherit _mako_generate_namespaces(context) File '/home/pjb/galaxy/galaxy-dist/database/compiled_templates/user/info.mako.py', line 23 in _mako_generate_namespaces ns = runtime.TemplateNamespace('__anon_0x7fabc449ed50', context._clean_inheritance_tokens(), templateuri=u'/user/info.mako', callables=None, calling_uri=_template_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 403 in __init__ calling_uri) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 624 in _lookup_template uri = lookup.adjust_uri(uri, relativeto) File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/lookup.py', line 228 in adjust_uri return self._uri_cache[key] File '/home/pjb/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/util.py', line 160 in __getitem__ item = dict.__getitem__(self, key) RuntimeError: maximum recursion depth exceeded in cmp -- Peter Briggs peter.briggs(a)manchester.ac.uk Bioinformatics Core Facility University of Manchester B.1083 Michael Smith Bldg Tel: (0161) 2751482

3 7

stack track on attempt to kill job from admin manage jobs page
by Langhorst, Brad 15 Oct '12

15 Oct '12

Error - <type 'exceptions.NameError'>: global name 'string' is not defined URL: http://galaxy.neb.com/admin/jobs File '/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', line 143 in __call__ app_iter = self.application(environ, start_response) File '/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py', line 91 in __call__ return self.app( environ, start_response ) File '/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 160 in __call__ body = method( trans, **kwargs ) File '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 205 in decorator return func( self, trans, *args, **kwargs ) File '/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/base/controllers/admin.py', line 1019 in jobs if stop_msg[-1] not in string.punctuation: NameError: global name 'string' is not defined Brad -- Brad Langhorst langhorst(a)neb.com<mailto:langhorst@neb.com>

2 1

Param Tag
by Alfredo Guilherme Silva Souza 15 Oct '12

15 Oct '12

Hi, I have a question about param tag. I need to pass the parameter $ __user_email__ part of the galaxy variables reserved for the default value of a parameter that I am creating example: name="email" /> <param value=$__user_email__ ...... Has someone done this before? Thank you ! -- *Alfredo Guilherme* * *

2 1

Avoiding same dataset selection
by Lukasse, Pieter 15 Oct '12

15 Oct '12

Hi, Is there a way to use <validator> or perhaps <filter> options to avoid the selection of the same dataset twice in different parameters of a tool. E.g. a tool has 2 "data" type parameters of the same type, but it should not be possible for the user to set both parameters to the same dataset. So if his history contains files A,B, and C and he selects A in his first parameter, then the second parameter should display only the options B and C. Thanks and regards, Pieter Lukasse Wageningen UR, Plant Research International Departments of Bioscience and Bioinformatics Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands +31-317480891; skype: pieter.lukasse.wur http://www.pri.wur.nl<http://www.pri.wur.nl/>

1 0

Gencode Partition (version 1.0.0)
by Kevin Y 15 Oct '12

15 Oct '12

Hi, We are trying to debug our local instance of Gencode Partition (version 1.0.0) We seem to missing this configuation file encode_feature_partitions/partition_list.txt The link given in the tool is behind a login wall and I can't get through: http://genome.imim.es/gencode/wiki/index.php/Collecting_Feature_Sets_from_A… Any idea where I can find the proper documentation? or should I contact the people behind http://genome.imim.es/ ? Thanks, Kevin

1 0

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galaxy-dev October 2012