I have spent hours trying to set environment variable in Galaxy. I am
managing the "s_mart" repos (you can check it if you wish), and I created
the simple files "test.xml" which prints the environment variables:
<tool id="test" name="test">
<description>This is a test.</description>
<command>env > $outputFile</command>
<data name="outputFile" format="txt" label="output test
<help>This is a test.</help>
and "tool_dependencies.xml", which appends something to the PYTHONPATH
As you guess, I cannot see anything added in the PYTHONPATH variable. I
have tried to append INSTALL_DIR and even "/tmp". None worked.
Do you have any suggestion for me?
Many thanks to you all,