Dear list,
I can not get the wonderful unipept visualization to work on our Galaxy
instance (a test instance on the dev branch). I get the message:
"Unfortunately we could not identify a suitable plugin...."
The file I try to visualize was generated by unipept (pept2lca) and is
of format d3_hierarchy.
Could someone tell me if I need to install / configure something to get
this running?
Thanks a lot.
Best,
Matthias
P.S. This might be also of interest for others, since this visualization
is used in the Metaproteomics tutorial of the GTN.
--
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Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.bernt(a)ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------
Dear list,
When running rmarkdown_wgcna I get the following error in the logs:
PaddingError: Placeholder of length '80' too short in package
bioconda::r-wgcna-1.51-r3.3.1_0.
The package must be rebuilt with conda-build > 2.0.
The command that seems to lead to this is:
Executing command:
/gpfs1/data/galaxy_server/galaxy-dev/database/dependencies/_conda/bin/conda
create -y --name mulled-v1-3bfe8da4ed798836281cc963619917
317ae960c9a828f7ea05d1670c65b19619 pandoc=1.15.0.6-0 r-getopt=1.20.0
r-rmarkdown=1.2 r-plyr=1.8.4 r-highcharter=0.4.0 r-dt=0.2
r-htmltools=0.3.5 r-wgcna=1.51
Any ideas?
Best,
Matthias
--
-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.bernt(a)ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------
