Hi Galaxy folks:
We have one data set in a shared library that will not import to a history.
I am able to import it using the page for that dataset, but not from the list of all datasets in the folder.
I’m not sure the source of the error - this particular row does not look odd to me.=
Any Ideas?
here’s a row that will import:
<tr class="dataset_row light library-row" data-id="e369c8b86fc4c943" style="display: table-row;"><td><span title="Dataset" class="fa fa-file-o"></span></td><td style="text-align: center; "><input style="margin: 0;" type="checkbox"></td><td><a href="#folders/F09026885d1dcbcc0/datasets/e369c8b86fc4c943" class="library-dataset">MM809_9_x4_B5.1.fastq</a><a></a></td><td></td><td>fastqsanger</td><td>31.5 MB</td><td>2018-08-10 02:38 PM</td><td></td><td><span data-toggle="tooltip" data-placement="top" title="" style="color:grey;" class="fa fa-globe fa-lg" data-original-title="Unrestricted dataset"></span><a href="#folders/F09026885d1dcbcc0/datasets/e369c8b86fc4c943/permissions"><button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permissions-dataset-btn" title="" data-original-title="Permissions of 'MM809_9_x4_B5.1.fastq'"><span class="fa fa-group"></span> Manage</button></a></td></tr>
here’s one that will not:
<td><span title="Dataset" class="fa fa-file"></span></td><td style="text-align: center; "><input style="margin: 0;" type="checkbox"></td><td><a href="#folders/F09026885d1dcbcc0/datasets/7582870467626242" class="library-dataset dark">MM809_9_x4_B5.2.fastq</a><a class="dark"></a></td><td></td><td>fastqsanger</td><td>31.5 MB</td><td>2018-08-10 02:38 PM</td><td></td><td><span data-toggle="tooltip" data-placement="top" title="" style="color:grey;" class="fa fa-globe fa-lg" data-original-title="Unrestricted dataset"></span><a href="#folders/F09026885d1dcbcc0/datasets/7582870467626242/permissions" class="dark"><button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permissions-dataset-btn" title="" data-original-title="Permissions of 'MM809_9_x4_B5.2.fastq'"><span class="fa fa-group"></span> Manage</button></a></td>
here’s the error in the js console:
TypeError: n.substring is not a function[Learn More] library-foldertoolbar-view.js:1205:16<webpack:///galaxy/scripts/mvc/library/library-foldertoolbar-view.js>
findCheckedItems/< library-foldertoolbar-view.js:1205:16<webpack:///galaxy/scripts/mvc/library/library-foldertoolbar-view.js> each jquery.js:365<webpack:///galaxy/scripts/libs/jquery/jquery.js> each jquery.js:137<webpack:///galaxy/scripts/libs/jquery/jquery.js> findCheckedItems library-foldertoolbar-view.js:1201:8<webpack:///galaxy/scripts/mvc/library/library-foldertoolbar-view.js> processImportToHistory library-foldertoolbar-view.js:283:28<webpack:///galaxy/scripts/mvc/library/library-foldertoolbar-view.js> importAllIntoHistory library-foldertoolbar-view.js:272:12<webpack:///galaxy/scripts/mvc/library/library-foldertoolbar-view.js> Import library-foldertoolbar-view.js:231:32<webpack:///galaxy/scripts/mvc/library/library-foldertoolbar-view.js> dispatch jquery.js:4736<webpack:///galaxy/scripts/libs/jquery/jquery.js> e.dispatch jquery.event.drag.js:377<webpack:///galaxy/scripts/libs/jquery/jquery.event.drag.js> add/m.handle jquery.js:4549<webpack:///galaxy/scripts/libs/jquery/jquery.js>
Hi All,
If you run a Galaxy server and that server links to the UCSC Genome Browser
*development* server, then you will need to update the URL you link to.
See below for details from Ann Zweig at UCSC.
I am writing because a few of your servers provide links to the UCSC Genome
> Browser development server at genome-test.*cse*.ucsc.edu or genome-test.
> *soe*.ucsc.edu (see list below). This weekend we are retiring that server
> and bringing it back to life next week with a new name: genome-test.*gi*.
> ucsc.edu.
Cheers,
Dave C
--
https://galaxyproject.org/https://usegalaxy.org/
I am running into issues configuring galaxy to auth against Active
Directory. The search user i have configured works for searching, but when
it goes to bind, it fails. Yes, i am using ldaps over ssl to the global
catalog ssl port...
Hi all, I’ve been looking at the new hierarchical upload API and I’d
like to try and use it to integrate our existing sequence data
repository a bit better with Galaxy. Currently I use a tool to post data
to Galaxy, which works, but seems a bit clunky. This seems more built in
and future proof. I’ve seen the discussion on galaxyproject/galaxy#5220
<https://github.com/galaxyproject/galaxy/pull/5220> but I was wondering
if there was any other, more formal, documentation. Or possibly anyone
who has actually implemented (or started to implement) anything using
this. Thanks!
I’ve also seen the tutorial linked in the release notes
<https://github.com/jmchilton/training-material/blob/rules/topics/introducti…>
but I was wondering where that is actually hosted for public
consumption. I’m a bit lost with the various places for Galaxy
documentation and training these days…
--
Lance Parsons - Scientific Programmer
Carl C. Icahn Laboratory - Room 136
Lewis-Sigler Institute for Integrative Genomics
Princeton University