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On 07/17/2014 12:31 PM, Peter Cock wrote:
On Thu, Jul 17, 2014 at 6:28 PM, Eric Rasche rasche.eric@yandex.ru wrote:
Am 17.07.2014 18:51, schrieb Peter Cock:
One reason I have been meaning to do some of these is familiarity with many of these formats from looking after/writing parsers in Biopython.
Peter, similar case here with BioPerl. All of my tools can output the full range of Bio::SeqIO output formats, so having datatypes would be great. Happy to contribute there.
Sounds good. The EMBOSS, BioPerl and Biopython projects have tried to adopt consistent file format names (pre-dating the EDAM ontology), but unfortunately the names adopted in Galaxy sometimes diverge :(
The EDAM format looks interesting, as does BioXSD for datatype conversion. Given that EDAM largely covers what's already in galaxy in terms of formats, it's be brilliant to have that over top of datatypes.
Peter
- -- Eric Rasche Programmer II Center for Phage Technology Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu rasche.eric@yandex.ru