Hi, I want to run a few of the interval operation tools on the command line, however I am getting the following error:
Traceback (most recent call last): File "/home/swebb/galaxy/galaxy_dist/tools/new_operations/gops_join.py", line 11, in <module> from galaxy import eggs ImportError: No module named galaxy
I assume I may need to alter some Environmental variables. Any help appreciated.
Thanks Shaun Webb
SHAUN WEBB wrote:
I want to run a few of the interval operation tools on the command line, however I am getting the following error:
Traceback (most recent call last): File "/home/swebb/galaxy/galaxy_dist/tools/new_operations/gops_join.py", line 11, in <module> from galaxy import eggs ImportError: No module named galaxy
I assume I may need to alter some Environmental variables. Any help appreciated.
Hi Shaun,
For many of the Python tools, you'll need to provide the path to Galaxy's lib directory:
% PYTHONPATH=/home/swebb/galaxy/galaxy_dist/lib python gops_join.py ...
--nate
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