Hello,
Does anyone know if it's possible to generate as output from a tool a dataset collection when it's input is only a single file?
I'm imagining a tool which takes as input a file containing a list of URLs for files outside of Galaxy and generates as output a dataset collection that can then be linked up to later tools.
Thanks,
Aaron
I think I may have just found the answer to my question in this trello card https://trello.com/c/ndVQmt3G/1857-tools-should-be-able-to-generate-one-or-m...
On Wed, Nov 12, 2014 at 3:15 PM, Aaron Petkau aaron.petkau@gmail.com wrote:
Hello,
Does anyone know if it's possible to generate as output from a tool a dataset collection when it's input is only a single file?
I'm imagining a tool which takes as input a file containing a list of URLs for files outside of Galaxy and generates as output a dataset collection that can then be linked up to later tools.
Thanks,
Aaron
Yup - sorry :(. Hopefully by the end of the year I will have something committed on that - it is a lot of work to do though.
-John
On Wed, Nov 12, 2014 at 4:25 PM, Aaron Petkau aaron.petkau@gmail.com wrote:
I think I may have just found the answer to my question in this trello card https://trello.com/c/ndVQmt3G/1857-tools-should-be-able-to-generate-one-or-m...
On Wed, Nov 12, 2014 at 3:15 PM, Aaron Petkau aaron.petkau@gmail.com wrote:
Hello,
Does anyone know if it's possible to generate as output from a tool a dataset collection when it's input is only a single file?
I'm imagining a tool which takes as input a file containing a list of URLs for files outside of Galaxy and generates as output a dataset collection that can then be linked up to later tools.
Thanks,
Aaron
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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Oh, no problem, I understand it's a lot of work. Thanks for taking the time to look into it though.
Aaron
On Thu, Nov 13, 2014 at 9:46 AM, John Chilton jmchilton@gmail.com wrote:
Yup - sorry :(. Hopefully by the end of the year I will have something committed on that - it is a lot of work to do though.
-John
On Wed, Nov 12, 2014 at 4:25 PM, Aaron Petkau aaron.petkau@gmail.com wrote:
I think I may have just found the answer to my question in this trello
card
https://trello.com/c/ndVQmt3G/1857-tools-should-be-able-to-generate-one-or-m...
On Wed, Nov 12, 2014 at 3:15 PM, Aaron Petkau aaron.petkau@gmail.com wrote:
Hello,
Does anyone know if it's possible to generate as output from a tool a dataset collection when it's input is only a single file?
I'm imagining a tool which takes as input a file containing a list of
URLs
for files outside of Galaxy and generates as output a dataset collection that can then be linked up to later tools.
Thanks,
Aaron
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
galaxy-dev@lists.galaxyproject.org